View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4737_low_1 (Length: 494)

Name: NF4737_low_1
Description: NF4737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4737_low_1
NF4737_low_1
[»] chr3 (5 HSPs)
chr3 (54-490)||(6942439-6942874)
chr3 (190-490)||(6939399-6939699)
chr3 (180-390)||(6787945-6788159)
chr3 (182-370)||(8467019-8467207)
chr3 (188-277)||(11484345-11484434)
[»] chr5 (6 HSPs)
chr5 (170-277)||(28362649-28362756)
chr5 (199-277)||(1569745-1569823)
chr5 (219-277)||(6522105-6522163)
chr5 (198-339)||(4314141-4314281)
chr5 (169-277)||(1560125-1560233)
chr5 (182-222)||(35052184-35052224)
[»] chr8 (2 HSPs)
chr8 (196-277)||(5354180-5354261)
chr8 (174-257)||(5508932-5509015)
[»] chr1 (2 HSPs)
chr1 (196-277)||(34564829-34564910)
chr1 (196-254)||(30526203-30526261)
[»] chr2 (3 HSPs)
chr2 (201-277)||(33720175-33720255)
chr2 (170-277)||(6683640-6683750)
chr2 (169-270)||(8452644-8452745)
[»] chr4 (1 HSPs)
chr4 (204-277)||(48681555-48681628)
[»] chr6 (2 HSPs)
chr6 (192-269)||(1782742-1782819)
chr6 (204-277)||(16519714-16519787)


Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 54 - 490
Target Start/End: Original strand, 6942439 - 6942874
Alignment:
Q  54 aagaaaaacatttaagaggaacataacagtttacattggtttccctaccaatgttaacatggcatgttacccacataatatgttagaacagcaaactggt 153  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||    
T  6942439 aagaaaaacatttaagaggaatgtaacagtttacattggtttccctaccaatgttaacatggcatgttacccata-agtatgttagaacagcaaactggt 6942537  T
Q  154 tcnnnnnnnnnnnnnttaaagaaacggtaaacgcaaataatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcaga 253  Q
    ||             |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6942538 tcaaaaatcaaaaaattaaagaaacagtaaacgcaaataatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcaga 6942637  T
Q  254 gcagctgcagttcctttttattatgagagaaagagtaaggtttacaatgcacaacgtgtgtataaaaactattgtccagattacaacatcaaccctgaac 353  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  6942638 gcagctgcagttcctttttattatgagagaaagagtaatgtttacaatgcacaacttgtgtataaacactattgtccagattacaacatcaaccctgaac 6942737  T
Q  354 cgtacccccagtcgccatcacgcaacaaactatgataccattgttccttatgctcatttcccagtctttaccctctttgaactttgaannnnnnncttta 453  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  6942738 cgtacccccagtcgccatcatgcaacaaactatgataccattgttccttatgctcatttcccagtctttaccctctttgaactttgaatttttttcttta 6942837  T
Q  454 tcatcatctgctcatctttcctccaattcttctcact 490  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  6942838 tcatcatctactcatctttcctccaattcttatcact 6942874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 190 - 490
Target Start/End: Original strand, 6939399 - 6939699
Alignment:
Q  190 ataatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattatgagagaaagagt 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6939399 ataatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattatgagagaaagagt 6939498  T
Q  290 aaggtttacaatgcacaacgtgtgtataaaaactattgtccagattacaacatcaaccctgaaccgtacccccagtcgccatcacgcaacaaactatgat 389  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6939499 aatgtttacaatgcacaacgtgtgtataaaaactattgtccagattacaacatcaaccgtgaaccgtacccccagtcgccatcacgcaacaaactatgat 6939598  T
Q  390 accattgttccttatgctcatttcccagtctttaccctctttgaactttgaannnnnnnctttatcatcatctgctcatctttcctccaattcttctcac 489  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||       |||||||||||||| ||||| ||||||||||||||| ||||    
T  6939599 accattgttccttatgctccattcccagtctttaccctctttgaactttgaatttttttctttatcatcatctactcatatttcctccaattcttatcac 6939698  T
Q  490 t 490  Q
    |    
T  6939699 t 6939699  T

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Target: chr3; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 180 - 390
Target Start/End: Complemental strand, 6788159 - 6787945
Alignment:
Q  180 gtaaacgcaaataatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattatga 279  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  6788159 gtaaacgcaaataataaacacacgatgtttggtaacgaagttcggccaatattgcctacatctccgactgcagagaagctgcagttcctttttattatga 6788060  T
Q  280 gagaaagagtaaggtttacaatgcacaacgtgtgta----taaaaactattgtccagattacaacatcaaccctgaaccgtacccccagtcgccatcacg 375  Q
    | |||||| |||||||||||||||||||| ||||||    |||| |||||||||||||||||||||||| ||||||||| |||||||||||||||| ||     
T  6788059 gtgaaagattaaggtttacaatgcacaacttgtgtataattaaacactattgtccagattacaacatcacccctgaaccatacccccagtcgccattaca 6787960  T
Q  376 caacaaactatgata 390  Q
    |||||||||||||||    
T  6787959 caacaaactatgata 6787945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 182 - 370
Target Start/End: Original strand, 8467019 - 8467207
Alignment:
Q  182 aaacgcaaataatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattatgaga 281  Q
    |||| ||||||  ||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||| |||||| |      
T  8467019 aaacacaaatagcgaaaacacaatgtttggtaacgaagttcggccaatattgcctacgtctccgactgtagagaagctgcagttcctttgtattatcaat 8467118  T
Q  282 gaaagagtaaggtttacaatgcacaacgtgtgtataaaaactattgtccagattacaacatcaaccctgaaccgtacccccagtcgcca 370  Q
    |||||| || |||||||| |||||||| | |   |||| ||||   | | ||||||||||||| ||| ||||||||||||| |||||||    
T  8467119 gaaagattagggtttacagtgcacaacttatacttaaatactacaattctgattacaacatcatcccagaaccgtaccccctgtcgcca 8467207  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 277
Target Start/End: Original strand, 11484345 - 11484434
Alignment:
Q  188 aaataatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattat 277  Q
    |||||||||||||||||||||||||||| ||||||||  ||| |||||||| | ||| ||| || |||  || |||||||||| ||||||    
T  11484345 aaataatgaacacacgatgtttggtaacaaagttcagtaaattttgcctacatatccaactccaaagcgactacagttcctttgtattat 11484434  T

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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 170 - 277
Target Start/End: Complemental strand, 28362756 - 28362649
Alignment:
Q  170 taaagaaacggtaaacgcaaataatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctt 269  Q
    ||||||| || |||||| | | |||||||||||||||||||||||| ||||| | ||||| ||||||| ||||| |||||||||||||||||||||||||    
T  28362756 taaagaatcgataaacgtagacaatgaacacacgatgtttggtaacaaagtttaaccaattttgcctatgtctcagactgcagagcagctgcagttcctt 28362657  T
Q  270 tttattat 277  Q
    | ||||||    
T  28362656 tgtattat 28362649  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 199 - 277
Target Start/End: Complemental strand, 1569823 - 1569745
Alignment:
Q  199 acacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattat 277  Q
    |||| |||| ||| |||||||||||| |||| ||||||||||||||||||||| || | ||||||||| ||| ||||||    
T  1569823 acacaatgtctggaaacgaagttcagacaattttgcctacgtctccgactgcaaaggaactgcagttcatttgtattat 1569745  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 6522105 - 6522163
Alignment:
Q  219 gttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattat 277  Q
    |||||||||||  |||||||||||| |||||||||||||||| ||| ||||| ||||||    
T  6522105 gttcagccaattgtgcctacgtctcagactgcagagcagctgtagtacctttctattat 6522163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 339
Target Start/End: Original strand, 4314141 - 4314281
Alignment:
Q  198 cacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattatgagagaaagagtaaggttta 297  Q
    |||||||  |||||||| ||||||  |||||| |||  ||| |||| ||||||||||||||||||||||  || |||||| || |||||| |  ||||||    
T  4314141 cacacgaattttggtaaagaagtttggccaattttgt-tacatctctgactgcagagcagctgcagttctgttgtattatcagcgaaagatttgggttta 4314239  T
Q  298 caatgcacaacgtgtgtataaaaactattgtccagattacaa 339  Q
    ||||| | ||| ||| | |||| ||||  |||||||||||||    
T  4314240 caatgtagaacttgtatttaaatactacggtccagattacaa 4314281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 277
Target Start/End: Complemental strand, 1560233 - 1560125
Alignment:
Q  169 ttaaagaaacggtaaacgcaaataatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagagcagctgcagttcct 268  Q
    |||| |||||| |||| ||||| |||||||||  | |||||| || |||||||||||||||  |||||| ||| | || | || |||| || |||||||     
T  1560233 ttaacgaaacgataaatgcaaacaatgaacacttgttgtttgctaccgaagttcagccaattgtgcctatgtccctgagtacatagcaactacagttcca 1560134  T
Q  269 ttttattat 277  Q
    |||||||||    
T  1560133 ttttattat 1560125  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 35052224 - 35052184
Alignment:
Q  182 aaacgcaaataatgaacacacgatgtttggtaacgaagttc 222  Q
    ||||||||| |||||||||||| |||||||||| |||||||    
T  35052224 aaacgcaaacaatgaacacacgttgtttggtaatgaagttc 35052184  T

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Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 196 - 277
Target Start/End: Original strand, 5354180 - 5354261
Alignment:
Q  196 aacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattat 277  Q
    ||||||| ||||||||||||||||||| |||||| |||||||| |||| |||| || |||||||| ||||||||| ||||||    
T  5354180 aacacacaatgtttggtaacgaagttcggccaattttgcctacttctctgactacaaagcagctgtagttcctttgtattat 5354261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 257
Target Start/End: Original strand, 5508932 - 5509015
Alignment:
Q  174 gaaacggtaaacgcaaataatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagagcag 257  Q
    |||||| |||||| | | || |||||||| ||| ||||||||||| |||||||||| ||||||||  |||| ||||||||||||    
T  5508932 gaaacgataaacgtagaaaaagaacacacaatgcttggtaacgaaattcagccaattttgcctacacctccaactgcagagcag 5509015  T

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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 196 - 277
Target Start/End: Complemental strand, 34564910 - 34564829
Alignment:
Q  196 aacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattat 277  Q
    ||||||||||||||||||||||||||| |||||  ||||||||||||||||||| ||||| | || || |||||| ||||||    
T  34564910 aacacacgatgtttggtaacgaagttcggccaaatttgcctacgtctccgactgtagagctggtgtaggtcctttctattat 34564829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 30526203 - 30526261
Alignment:
Q  196 aacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagag 254  Q
    ||||||||||||||||||||||||||   |||||  ||||||||||||| ||| |||||    
T  30526203 aacacacgatgtttggtaacgaagtttgaccaattgtgcctacgtctccaactacagag 30526261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 33720255 - 33720175
Alignment:
Q  201 acgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgca----gagcagctgcagttcctttttattat 277  Q
    |||||||||| ||||||||||| |||||| |||||||| ||||||||||||    ||||||||||||||||||| ||||||    
T  33720255 acgatgtttgataacgaagttcggccaattttgcctacatctccgactgcagagcgagcagctgcagttcctttctattat 33720175  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 170 - 277
Target Start/End: Original strand, 6683640 - 6683750
Alignment:
Q  170 taaagaaacggtaaacgcaaataatgaacacacgatgtttggtaacgaagtt----cagccaatattgcctacgtctccgactgcagagcagctgcagtt 265  Q
    |||||||||| | |||||||| ||||||||||| |||||||| |||||| ||    |||| ||| |||||||  ||| ||||||||||||||||||||||    
T  6683640 taaagaaacgatgaacgcaaacaatgaacacac-atgtttggaaacgaaatttgatcagctaattttgcctatatcttcgactgcagagcagctgcagtt 6683738  T
Q  266 cctttttattat 277  Q
    ||||| ||||||    
T  6683739 cctttgtattat 6683750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 270
Target Start/End: Original strand, 8452644 - 8452745
Alignment:
Q  169 ttaaagaaacggtaaacgcaaataatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagagcagctgcagttcct 268  Q
    ||||| ||||| |||| ||||| ||||||| ||||||||||| ||| ||||||| |  ||| ||||||| ||||||||  | || ||||||||| |||||    
T  8452644 ttaaaaaaacgataaatgcaaacaatgaactcacgatgtttgttaatgaagttcggttaattttgcctatgtctccgatgggagggcagctgcaattcct 8452743  T
Q  269 tt 270  Q
    ||    
T  8452744 tt 8452745  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 48681628 - 48681555
Alignment:
Q  204 atgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattat 277  Q
    ||||||||||| ||||||| |||||| ||| || ||||||||| |||||||  |||||||||||||| ||||||    
T  48681628 atgtttggtaatgaagttcggccaattttgtctgcgtctccgaatgcagagtggctgcagttcctttatattat 48681555  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 192 - 269
Target Start/End: Complemental strand, 1782819 - 1782742
Alignment:
Q  192 aatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctt 269  Q
    |||||||| || ||||||||||| ||||||  |||||| ||||| || |||||||||||||||  | |||||||||||    
T  1782819 aatgaacatacaatgtttggtaatgaagtttggccaattttgccaacctctccgactgcagagtggttgcagttcctt 1782742  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 16519787 - 16519714
Alignment:
Q  204 atgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattat 277  Q
    ||||||| ||| ||||||| || |||  ||||||  ||||| || ||||||||| |||||||||||||||||||    
T  16519787 atgtttgttaatgaagttcggctaattgtgcctaattctccaacagcagagcagttgcagttcctttttattat 16519714  T

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