View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4738-Insertion-1 (Length: 935)
Name: NF4738-Insertion-1
Description: NF4738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4738-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 733; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 733; E-Value: 0
Query Start/End: Original strand, 8 - 931
Target Start/End: Original strand, 41040786 - 41041713
Alignment:
| Q |
8 |
acacagtacaccaaacaaaccaaaactatataattgcttccaaaggttgaccttggattacttaaaaaatagaacatggagagataaactacaggtttga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41040786 |
acacagtacaccaaacaaaccaaaactatataattgcttccaaaggttgaccttggattacttaaaaaatagaacatggagagataaactacaggtttga |
41040885 |
T |
|
| Q |
108 |
tgattgtactgaaaagatcgattgtatctttcgctagaaaatgggctagactgcttatcccagctgcactttccctccagtattgtaacttatccgtagt |
207 |
Q |
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| T |
41040886 |
tgattgtactgaaaagatcgattgtatctttcgctagaaaatgggctagactgcttatcccagctgcactttccctccagtattgtaacttatccgtagt |
41040985 |
T |
|
| Q |
208 |
aaacgatctaagtgctgcaatcttgcaaagtagagctgcacatatgcaatgtattttagaggataggctaattaaaatcttttattatccaatgatgcat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41040986 |
aaacgatctaagtgctgcaatcttgcaaagtagagctgcacatatgcaatgtattttagaggataggctaattaaaatcttttattatccaatgatgcat |
41041085 |
T |
|
| Q |
308 |
aaaataagtctcaaatttgggtgtgatttgttaaatgatgtaacatttgttcatcacgtgtcagctcagcggtaagagtttgatcttgtaatcttaaagg |
407 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41041086 |
aaaataagtctcaaatttgagtgtgatttgttaaatgatgtaacgttttttcatcatgtgtcagctcagaggtaagagtttgatcttgtaatcttaaagg |
41041185 |
T |
|
| Q |
408 |
atg----------agacaaattttccttttttatttgcgggtagacttgtaacaaaagtttggtataatgatatcagcacactgatactcaaatagaatt |
497 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41041186 |
atgaggtttaaatagacaaattttccttttttatttgcgggtagacttgtaacaaaagtttggtataatgatatcagcacactgatactcaaatagaatt |
41041285 |
T |
|
| Q |
498 |
tcaaacttacaaacagaaataactgtgtatgtatagccaagggacccaaatgtttcatcttttactttggtaagagttcctaagatagcaccggccacca |
597 |
Q |
| |
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| T |
41041286 |
tcaaacttacaaacagaaataactgtgtatgtatagccaagggacccaaatgtttcatcatttactttggtaagagttcctaagatagcaccggccacca |
41041385 |
T |
|
| Q |
598 |
ataaaaggagatagtcgattgcttgtaattgtgcttctcgaagcagctgcttactaaccctgaaaagaattaactaatcaatctaacaggcttgttaact |
697 |
Q |
| |
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| T |
41041386 |
ataaaaggagatagtcgattgcttgtaattgtgcttctcgaagcagctgcttactaaccctgaaaagaattaactaatcaatctaacaggcttgttaact |
41041485 |
T |
|
| Q |
698 |
cnnnnnnnnnnnnnnnnnnntctaataatgggatttttgtaccggccaacaaagtatctgtattgttgggctacattaggagtctttcgggttagataag |
797 |
Q |
| |
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| T |
41041486 |
c----tctgtgtgtgtgtgttctaataatgg--attttgtaccggccaacgaagtatctgtattgttgggctacattaggagtctttc-ggttagataag |
41041578 |
T |
|
| Q |
798 |
t-ctttgttcttgagaaatattgcttctatatgatctccctggatcct-atattattcttcaaatcctcccaaaactctataaaaaagga-tgatcagaa |
894 |
Q |
| |
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| ||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41041579 |
tcctttgttcttgag-aatattgcttctacatgatctccttggatcctaatattattcttcaaatcctcccaaaactctataaaaaaggattgatcagaa |
41041677 |
T |
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| Q |
895 |
gtttcctcagtacccttttaacgtaagaattgcattt |
931 |
Q |
| |
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||||||||||||||| ||| |||||||| |||||||| |
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| T |
41041678 |
gtttcctcagtaccc-tttgacgtaagagttgcattt |
41041713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 37 - 253
Target Start/End: Complemental strand, 28091167 - 28090951
Alignment:
| Q |
37 |
ataattgcttccaaaggttgaccttggattacttaaaaaatagaacatggagagataaactacaggtttgatgattgtactgaaaagatcgattgtatct |
136 |
Q |
| |
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|||||| ||| | ||| ||||||||||||| || ||||| ||||||||||| | ||||| | |||||||| |||||||||||||||||| ||||||||| |
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| T |
28091167 |
ataattactttcgaagcttgaccttggattgctaaaaaagtagaacatggataaataaatgagaggtttgacgattgtactgaaaagatcaattgtatct |
28091068 |
T |
|
| Q |
137 |
ttcgctagaaaatgggctagactgcttatcccagctgcactttccctccagtattgtaacttatccgtagtaaacgatctaagtgctgcaatcttgcaaa |
236 |
Q |
| |
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|| || | |||||| ||||||||||| ||||| | |||||| ||||||||||||||||| |||||| ||| ||| ||||| || |||||||||||||||| |
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| T |
28091067 |
ttggccaaaaaatgagctagactgctgatccctgatgcactctccctccagtattgtaatttatccatagaaaatgatctcagagctgcaatcttgcaaa |
28090968 |
T |
|
| Q |
237 |
gtagagctgcacatatg |
253 |
Q |
| |
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| T |
28090967 |
gtagagctgcatatatg |
28090951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 496 - 662
Target Start/End: Complemental strand, 28090042 - 28089876
Alignment:
| Q |
496 |
tttcaaacttacaaacagaaataactgtgtatgtatagccaagggacccaaatgtttcatcttttactttggtaagagttcctaagatagcaccggccac |
595 |
Q |
| |
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||||||||||||| |||| ||| || || |||||||| ||||| || |||||||||||||| |||||||| ||||||||||| | ||||||||| || || |
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| T |
28090042 |
tttcaaacttacatacagcaatgacagtatatgtatatccaagagatccaaatgtttcatcgtttactttagtaagagttcccaggatagcaccagcaac |
28089943 |
T |
|
| Q |
596 |
caataaaaggagatagtcgattgcttgtaattgtgcttctcgaagcagctgcttactaaccctgaaa |
662 |
Q |
| |
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| T |
28089942 |
taataaaaggagatagtcaactgcttgtgcttttgcttctcgcagctgctgcttaccaaccctgaaa |
28089876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 21494518 - 21494471
Alignment:
| Q |
74 |
aaatagaacatggagagataaactacaggtttgatgattgtactgaaa |
121 |
Q |
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| T |
21494518 |
aaatagaacatggagaggtaaaccagaggtttgatgattgtactgaaa |
21494471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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