View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4738-Insertion-4 (Length: 380)

Name: NF4738-Insertion-4
Description: NF4738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4738-Insertion-4
NF4738-Insertion-4
[»] chr6 (30 HSPs)
chr6 (8-380)||(4601499-4601871)
chr6 (293-357)||(4505852-4505916)
chr6 (296-379)||(4617020-4617103)
chr6 (293-357)||(4480688-4480752)
chr6 (293-363)||(3171736-3171806)
chr6 (294-358)||(4299812-4299876)
chr6 (293-357)||(4492950-4493014)
chr6 (298-354)||(4560506-4560562)
chr6 (301-357)||(4267239-4267295)
chr6 (293-357)||(4504470-4504534)
chr6 (298-354)||(4563711-4563767)
chr6 (298-357)||(4557125-4557184)
chr6 (298-357)||(4570972-4571031)
chr6 (295-349)||(4515202-4515256)
chr6 (293-358)||(4516316-4516381)
chr6 (293-349)||(4461118-4461174)
chr6 (298-354)||(4574308-4574364)
chr6 (298-358)||(4606963-4607023)
chr6 (301-357)||(4622145-4622201)
chr6 (296-357)||(4392099-4392160)
chr6 (298-351)||(4579432-4579485)
chr6 (156-241)||(4616929-4617014)
chr6 (298-354)||(4585636-4585692)
chr6 (298-354)||(4592231-4592287)
chr6 (302-354)||(4598175-4598227)
chr6 (59-155)||(4616379-4616477)
chr6 (301-342)||(4256700-4256741)
chr6 (304-357)||(4490428-4490481)
chr6 (298-354)||(4613794-4613850)
chr6 (293-357)||(4625946-4626010)
[»] chr5 (3 HSPs)
chr5 (39-242)||(28000449-28000653)
chr5 (291-379)||(28000150-28000238)
chr5 (301-357)||(24103002-24103058)
[»] chr8 (3 HSPs)
chr8 (292-379)||(1674220-1674307)
chr8 (298-350)||(20863923-20863975)
chr8 (298-357)||(16686340-16686399)
[»] scaffold0288 (1 HSPs)
scaffold0288 (301-379)||(3770-3848)
[»] chr3 (1 HSPs)
chr3 (264-374)||(1281082-1281190)
[»] chr7 (1 HSPs)
chr7 (304-357)||(3086426-3086479)
[»] scaffold0477 (1 HSPs)
scaffold0477 (301-357)||(4759-4815)


Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 8 - 380
Target Start/End: Original strand, 4601499 - 4601871
Alignment:
Q  8 agtttgtgatcaatctgtatcacatacatggtaatgagttggttaagctatagtaactgtgaaaggaaacttattccaaacttcaattaataaagtttct 107  Q
    ||||||||||||||||||||||||| |||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4601499 agtttgtgatcaatctgtatcacatgcatgg----gagttggttaagctatagtaactgtgaaaggaaacttattccaaacttcaattaataaagtttct 4601594  T
Q  108 ttctaatcatccctaggaaaaatatttgaagcttcacataatattaatcccaaattgaatattggaatagtacatagtaaaaaatacattgcatcaaagc 207  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4601595 ttctaatcagccctaggaaaaatatttgaagcttcacataatattaatcccaaattcaatattggaatagtacatagtaaaaaatacattgcatcaaagc 4601694  T
Q  208 atagtaatagcttaataat----ttagaaacaacctccaggtcgataaagtagtagaatactgcattgtataaaataatatcattatatatctaattttg 303  Q
    |||||||||||||||||||    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  4601695 atagtaatagcttaataatttaattagaaacaacctccaggtcgataaagtaatagaatactgcattgtataaaacaatatcattatatatctaattttg 4601794  T
Q  304 tttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacctaatctagtgctctcctttgcca 380  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  4601795 tttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacctagtctagtgctctcctttgcca 4601871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 293 - 357
Target Start/End: Original strand, 4505852 - 4505916
Alignment:
Q  293 atctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 357  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  4505852 atctaattttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccacc 4505916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 296 - 379
Target Start/End: Original strand, 4617020 - 4617103
Alignment:
Q  296 taattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacctaatctagtgctctcctttgcc 379  Q
    |||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||  ||||||| |||||| ||||    
T  4617020 taattttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgcc 4617103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 293 - 357
Target Start/End: Original strand, 4480688 - 4480752
Alignment:
Q  293 atctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 357  Q
    |||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||    
T  4480688 atctaattttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccacc 4480752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 293 - 363
Target Start/End: Original strand, 3171736 - 3171806
Alignment:
Q  293 atctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacctaatct 363  Q
    ||||||| |||||||||||| ||||||||||| ||||| |||| ||||||||||||||||||||| |||||    
T  3171736 atctaatattgtttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatct 3171806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 4299876 - 4299812
Alignment:
Q  294 tctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacct 358  Q
    |||||| |||||||||||  |||||||||||||||||||||| ||||||||| ||||||||||||    
T  4299876 tctaatattgtttaagcagaacctccttaataactttgtccaagttcatgtacgaacaaccacct 4299812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 293 - 357
Target Start/End: Original strand, 4492950 - 4493014
Alignment:
Q  293 atctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 357  Q
    |||||||||||||||||||| || ||||| || |||||||||| |||||||||||||||||||||    
T  4492950 atctaattttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccacc 4493014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 4560506 - 4560562
Alignment:
Q  298 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaacc 354  Q
    ||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||    
T  4560506 attttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacc 4560562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 357
Target Start/End: Complemental strand, 4267295 - 4267239
Alignment:
Q  301 ttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 357  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||||| |||||||    
T  4267295 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccacc 4267239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 357
Target Start/End: Complemental strand, 4504534 - 4504470
Alignment:
Q  293 atctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 357  Q
    ||||||| || ||||||||| || |||||||| |||||||||| |||||||||||||||||||||    
T  4504534 atctaatattttttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccacc 4504470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 4563711 - 4563767
Alignment:
Q  298 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaacc 354  Q
    ||||||||||||||| |||||||| || |||||||||| ||||||||||||||||||    
T  4563711 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacc 4563767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 4557125 - 4557184
Alignment:
Q  298 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 357  Q
    ||||||||||||||| ||||||||||| ||||| ||||  ||||||||||||||||||||    
T  4557125 attttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccacc 4557184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 4570972 - 4571031
Alignment:
Q  298 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 357  Q
    ||||| ||||||||| ||||||||||| ||||| |||| |||||||||||||||||||||    
T  4570972 attttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccacc 4571031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 4515256 - 4515202
Alignment:
Q  295 ctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaa 349  Q
    ||||||||||||||||||||||||||| || |||||||||| ||||| |||||||    
T  4515256 ctaattttgtttaagcaacacctccttgatcactttgtccaagttcaagtatgaa 4515202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 358
Target Start/End: Original strand, 4516316 - 4516381
Alignment:
Q  293 atctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacct 358  Q
    |||||||||||||| |||| |||||||||||| ||||| |||| |||||  |||||||||||||||    
T  4516316 atctaattttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacct 4516381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 293 - 349
Target Start/End: Original strand, 4461118 - 4461174
Alignment:
Q  293 atctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaa 349  Q
    |||||||||||||||||||| || |||||||| |||||||||| |||| ||||||||    
T  4461118 atctaattttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaa 4461174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 4574308 - 4574364
Alignment:
Q  298 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaacc 354  Q
    ||||||||||||||||||||||||||| ||||| |||| |||  |||||||||||||    
T  4574308 attttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacc 4574364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 4607023 - 4606963
Alignment:
Q  298 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacct 358  Q
    ||||||||||||||| |||| |||||| ||||| |||| ||||||||||||| ||||||||    
T  4607023 attttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaaccacct 4606963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 4622145 - 4622201
Alignment:
Q  301 ttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 357  Q
    |||||||||||  |||||||||||||||||||||| |||  ||||||||||||||||    
T  4622145 ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccacc 4622201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 4392160 - 4392099
Alignment:
Q  296 taattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 357  Q
    ||||| ||||||||||| ||||||||||| | |||||||| ||||||| ||||| |||||||    
T  4392160 taattatgtttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccacc 4392099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 4579432 - 4579485
Alignment:
Q  298 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaaca 351  Q
    ||||||||| || |||||||||||||| ||||| |||| |||||||||||||||    
T  4579432 attttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaaca 4579485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 241
Target Start/End: Original strand, 4616929 - 4617014
Alignment:
Q  156 cccaaattgaatattggaatagtacatagtaaaaaatacattgcatcaaagcatagtaatagcttaataatttagaaacaacctcc 241  Q
    |||||||| ||||||| || | |||||||| ||||||||| | ||||||||||||||||| || ||| ||||| || || ||||||    
T  4616929 cccaaattaaatattgaaacaatacatagttaaaaatacagtacatcaaagcatagtaatggcctaaaaatttcgatacgacctcc 4617014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 4585636 - 4585692
Alignment:
Q  298 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaacc 354  Q
    ||||| ||||||||| ||||||||||| ||||| |||| ||| ||||||||||||||    
T  4585636 attttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacc 4585692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 4592231 - 4592287
Alignment:
Q  298 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaacc 354  Q
    ||||| |||||||||||||||||| || | |||||||| |||||| |||||||||||    
T  4592231 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacc 4592287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 354
Target Start/End: Original strand, 4598175 - 4598227
Alignment:
Q  302 tgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaacc 354  Q
    |||||||| |||||||||||||| ||||| || | ||||||||||||||||||    
T  4598175 tgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacc 4598227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 4616379 - 4616477
Alignment:
Q  59 agtaactgtgaaaggaaacttattccaaacttcaatta-ataaagtttctttctaatcatccc-taggaaaaatatttgaagcttcacataatattaat 155  Q
    ||||| |||| |||||  ||| |||||||||||||||| || ||||||| | |||||||  |  ||| ||||||||||||||||||||||||| |||||    
T  4616379 agtaattgtggaaggagccttgttccaaacttcaattatatgaagtttcatcctaatcaggctgtagaaaaaatatttgaagcttcacataatgttaat 4616477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 4256741 - 4256700
Alignment:
Q  301 ttgtttaagcaacacctccttaataactttgtccaggttcat 342  Q
    |||||||||||  |||||||||||||||||||||| ||||||    
T  4256741 ttgtttaagcatgacctccttaataactttgtccaagttcat 4256700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 357
Target Start/End: Complemental strand, 4490481 - 4490428
Alignment:
Q  304 tttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 357  Q
    ||||||||  || |||||||| |||||||||| |||||||||||||| ||||||    
T  4490481 tttaagcatgacatccttaatcactttgtccaagttcatgtatgaactaccacc 4490428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 4613850 - 4613794
Alignment:
Q  298 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaacc 354  Q
    ||||||||| |||| |||||| || || |||||||||| |||||| |||||||||||    
T  4613850 attttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacc 4613794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 357
Target Start/End: Original strand, 4625946 - 4626010
Alignment:
Q  293 atctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 357  Q
    ||||||| |||||||||||| || || ||||| | ||| ||||  ||||||||||||||||||||    
T  4625946 atctaatattgtttaagcaagacatcattaatcagtttatccatattcatgtatgaacaaccacc 4626010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 39 - 242
Target Start/End: Complemental strand, 28000653 - 28000449
Alignment:
Q  39 taatgagttggttaagctatagtaactgtgaaaggaaacttattccaaacttcaatta-ataaagtttctttctaatca-tccct-aggaaaaatatttg 135  Q
    ||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||| |||||| ||  |||  ||||  |||||||||||||    
T  28000653 taatgtgttggttaagctatagtaactatgaaaggaaccttattccaaacttcaattatataaattttcttgctggtcagaccctctggaaaaatatttg 28000554  T
Q  136 aagcttcacataatattaatcccaaattgaatattggaatagtacatagtaaaaaatacattgcatcaaagcatagtaatagcttaataatttagaaaca 235  Q
    || |||||| |||| ||||||||||||||||| ||  | ||||||  |||| || |||   ||||||||||| |||||||||||||| ||||||||||||    
T  28000553 aaacttcacgtaatgttaatcccaaattgaatttttaagtagtac--agtacaatatatggtgcatcaaagcgtagtaatagcttaaaaatttagaaaca 28000456  T
Q  236 acctcca 242  Q
    |||||||    
T  28000455 acctcca 28000449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 291 - 379
Target Start/End: Complemental strand, 28000238 - 28000150
Alignment:
Q  291 atatctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacctaatctagtgctctcctttgcc 379  Q
    |||||||||||||||||| |||||| |||||||| |||||||||| ||||||||||||||||||||||  ||||||| |||||| ||||    
T  28000238 atatctaattttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcc 28000150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 24103002 - 24103058
Alignment:
Q  301 ttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 357  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||||| |||||||    
T  24103002 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccacc 24103058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 292 - 379
Target Start/End: Original strand, 1674220 - 1674307
Alignment:
Q  292 tatctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacctaatctagtgctctcctttgcc 379  Q
    |||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||  ||||||| |||||| ||||    
T  1674220 tatctaattttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcc 1674307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 20863975 - 20863923
Alignment:
Q  298 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaac 350  Q
    ||||||||||||||||||||||||||| |||||||||| |||||| |||||||    
T  20863975 attttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaac 20863923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 16686399 - 16686340
Alignment:
Q  298 attttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 357  Q
    ||||||||||||||| |||||| |||| ||||| |||| |||||||||||||||||||||    
T  16686399 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccacc 16686340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 301 - 379
Target Start/End: Complemental strand, 3848 - 3770
Alignment:
Q  301 ttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacctaatctagtgctctcctttgcc 379  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||  ||||||| |||||| ||||    
T  3848 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgcc 3770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 1281082 - 1281190
Alignment:
Q  264 ctgcattgtataaaataatatcattatatatctaattttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacctaatct 363  Q
    |||||||| | |||| ||||||||| |||  ||||||||||||||||||||  |||||||| |||||||| | |||||||||||||||||||||   |||    
T  1281082 ctgcattgcagaaaacaatatcattctat--ctaattttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtct 1281179  T
Q  364 agtgctctcct 374  Q
    |||| ||||||    
T  1281180 agtgttctcct 1281190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 3086426 - 3086479
Alignment:
Q  304 tttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 357  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  3086426 tttaagcaagacctccttaataactttgtccaagttcatgtatgaacaaccacc 3086479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 357
Target Start/End: Complemental strand, 4815 - 4759
Alignment:
Q  301 ttgtttaagcaacacctccttaataactttgtccaggttcatgtatgaacaaccacc 357  Q
    |||||||||||  ||||||||||| |||||||||| ||||||||||||||| |||||    
T  4815 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacc 4759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University