View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4738_high_1 (Length: 532)

Name: NF4738_high_1
Description: NF4738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4738_high_1
NF4738_high_1
[»] chr3 (20 HSPs)
chr3 (14-513)||(23498403-23498896)
chr3 (20-289)||(23477960-23478229)
chr3 (14-289)||(23446654-23446929)
chr3 (18-313)||(23453434-23453725)
chr3 (14-286)||(23385689-23385961)
chr3 (342-513)||(23446949-23447117)
chr3 (342-513)||(23478249-23478417)
chr3 (14-286)||(23404060-23404332)
chr3 (14-286)||(23351351-23351623)
chr3 (14-286)||(23462679-23462951)
chr3 (14-286)||(23439253-23439526)
chr3 (358-513)||(23453728-23453887)
chr3 (46-286)||(23471821-23472061)
chr3 (427-513)||(23472187-23472272)
chr3 (427-513)||(23439651-23439737)
chr3 (442-492)||(23463037-23463087)
chr3 (446-513)||(23351699-23351766)
chr3 (442-513)||(23386035-23386106)
chr3 (45-92)||(36001906-36001953)
chr3 (442-484)||(23404406-23404448)
[»] scaffold0201 (2 HSPs)
scaffold0201 (14-286)||(10824-11096)
scaffold0201 (427-514)||(11183-11270)
[»] chr4 (1 HSPs)
chr4 (46-96)||(12897553-12897603)


Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 14 - 513
Target Start/End: Original strand, 23498403 - 23498896
Alignment:
Q  14 gagatgaacaaccatcgagtaagagttcacgaagagattttgaatgaattttggttttaaggcttttaatctttttgcaacctcgtaaatctagatatct 113  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23498403 gagaagaacaaccatcgagtaagagttcacaaagagattttgaatgaatgttggttttaaggctttcaatctttttgcaacctcgtaaatctagatatct 23498502  T
Q  114 aagatcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataaatctggg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23498503 aagatcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataagtctggg 23498602  T
Q  214 atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaaaacgacattgcttagaaaccaataaat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||   |||||||  |||||    
T  23498603 atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaaaacaccattg---agaaaccgttaaat 23498699  T
Q  314 tcacaatcatgtgcgagtgttgattaaaagagaaactaaacctaataattaagcatatatagagactttttaagaataagcattagacttcctttcatac 413  Q
    ||| ||||| ||| ||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||    
T  23498700 tcataatcacgtgtgagtgttgattaaaagagaaactaaacc---taattaagcataaatagagactttttaagaatgagcattagacttcctctcatac 23498796  T
Q  414 ttcaacaaattatcaagtatatccaaacacatttgtacctgaactccaacccagagctttttaagcttgctatgactcaagtgaagctctatgagcattt 513  Q
    ||| |||||||| |||||||||||||||| | |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23498797 ttcgacaaattaacaagtatatccaaacagaattgtacctgaactccatcccatagctttttaagcttgctatgactcaagtgaagctctatgagcattt 23498896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 20 - 289
Target Start/End: Original strand, 23477960 - 23478229
Alignment:
Q  20 aacaaccatcgagtaagagttcacgaagagattttgaatgaattttggttttaaggcttttaatctttttgcaacctcgtaaatctagatatctaagatc 119  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23477960 aacaaccatcaagtaagagttcacgaagagattttgaatgaatgttggttttaaggctttcaatctttttgcaacctcgtaaatctagatatctaagatc 23478059  T
Q  120 agggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataaatctgggatctca 219  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23478060 agggagagaaaagatagaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataagtctgggatctca 23478159  T
Q  220 atcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaaaac 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23478160 atcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaaaac 23478229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 23446654 - 23446929
Alignment:
Q  14 gagatgaacaaccatcgagtaagagttcacgaagagattttgaatgaattttggttttaaggcttttaatctttttgcaacctcgtaaatctagatatct 113  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  23446654 gagatgcacaaccatcgagtaagagttcacgaagagattttgaatgaatgttggttttaaggctttcaatctttttgcagtctcgtaaatctagatatct 23446753  T
Q  114 aagatcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataaatctggg 213  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23446754 aagatcagggagagaaaagatggaaggatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataagtctggg 23446853  T
Q  214 atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaaaac 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23446854 atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaaaaagaaataaaaac 23446929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 23453434 - 23453725
Alignment:
Q  18 tgaacaaccatcgagtaagagttcacgaagagattttgaatgaattttggttttaaggcttttaatctttttgcaacctcgtaaatctagatatctaaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23453434 tgaacaaccatcgagtaagagttcacgaagagattttgaatgaatgttggttttaaggctttcaatctttttgcaacctcgtaaatctagatatctaaga 23453533  T
Q  118 tcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataaatctgggatct 217  Q
    ||||||||| | ||||| |||| ||||||||||| |||||||||||||||||||    | |||| ||||||||||||| |||||||||| ||||||||||    
T  23453534 tcagggagacagaagatggaaggatggagctgacacaggctttcacattgaaaa----acactccatgaagatttgtatccttagataagtctgggatct 23453629  T
Q  218 caatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaaaacgacattgcttagaaaccaataaat 313  Q
    ||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||| |||||    
T  23453630 caatcagatctttggaggattcaagccggagtatgtttagattcacaagattctgtaacaataaataaacatgacattgcttagaaaccattaaat 23453725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 23385689 - 23385961
Alignment:
Q  14 gagatgaacaaccatcgagtaagagttcacgaagagattttgaatgaattttggttttaaggcttttaatctttttgcaacctcgtaaatctagatatct 113  Q
    ||||||||||||||| |||||| ||| |||  ||||||||||||||||| |||| ||||||||||| ||||||| ||||||||| ||||||||||||| |    
T  23385689 gagatgaacaaccattgagtaaaagtacacagagagattttgaatgaatgttggatttaaggctttcaatctttatgcaacctcttaaatctagatatat 23385788  T
Q  114 aagatcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataaatctggg 213  Q
    ||    ||||||||||||||| || | ||||||||||| ||||||||||||||   | |||| || ||| | ||||||| ||||| ||||||| ||||||    
T  23385789 aattcgagggagagaaaagatggatggatggagctgacgcaggctttcacattccgagagatgtattctgtcaagatttatagccctagataagtctggg 23385888  T
Q  214 atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaa 286  Q
    ||||||||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  23385889 atctcaatcagatctttggaggattcaagccaaagtactcttagattcacaagattctgtaacaagaaataaa 23385961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 342 - 513
Target Start/End: Original strand, 23446949 - 23447117
Alignment:
Q  342 agagaaactaaacctaataattaagcatatatagagactttttaagaataagcattagacttcctttcatacttcaacaaattatcaagtatatccaaac 441  Q
    ||||||||||||||||||   |||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  23446949 agagaaactaaacctaat---taagcataaatagagactttttaagaatgagcattagacttcctctcatacttcaacaaattaacaagtatatccaaac 23447045  T
Q  442 acatttgtacctgaactccaacccagagctttttaagcttgctatgactcaagtgaagctctatgagcattt 513  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23447046 acatttgtacctgaactccatcccatagctttttaagcttgctatgactcaagtgaagctctatgagcattt 23447117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 342 - 513
Target Start/End: Original strand, 23478249 - 23478417
Alignment:
Q  342 agagaaactaaacctaataattaagcatatatagagactttttaagaataagcattagacttcctttcatacttcaacaaattatcaagtatatccaaac 441  Q
    ||||||||||||||||||   |||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| |||||| |||||||||||||||    
T  23478249 agagaaactaaacctaat---taagcataaatagagactttttaagaatgagcattagacttcctctcatacttcaaaaaattaacaagtatatccaaac 23478345  T
Q  442 acatttgtacctgaactccaacccagagctttttaagcttgctatgactcaagtgaagctctatgagcattt 513  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23478346 acatttgtacctgaactccatcccatagctttttaagcttgctatgactcaagtgaagctctatgagcattt 23478417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 23404060 - 23404332
Alignment:
Q  14 gagatgaacaaccatcgagtaagagttcacgaagagattttgaatgaattttggttttaaggcttttaatctttttgcaacctcgtaaatctagatatct 113  Q
    ||||||||||||||| ||||||||||| || |||||||||||||||||| || ||||||||||||| |||  || ||||||||| ||| |||||||||      
T  23404060 gagatgaacaaccattgagtaagagttgacaaagagattttgaatgaatgtttgttttaaggctttcaatacttatgcaacctcttaagtctagatattg 23404159  T
Q  114 aagatcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataaatctggg 213  Q
    ||| | ||||||||||||||| || | |||||| |||| || |||||||||||   | |||  |||  ||  ||||||||||||| ||||||| ||||||    
T  23404160 aagttgagggagagaaaagatggatggatggagttgacgcaagctttcacattccgagagaagtacaatagcaagatttgtagccctagataagtctggg 23404259  T
Q  214 atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaa 286  Q
    ||||||||||||| |||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||    
T  23404260 atctcaatcagatctttggaggattcaagccaaagtgttcttagattcacaagattctgtaacaagaaataaa 23404332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 23351351 - 23351623
Alignment:
Q  14 gagatgaacaaccatcgagtaagagttcacgaagagattttgaatgaattttggttttaaggcttttaatctttttgcaacctcgtaaatctagatatct 113  Q
    |||||||||| ||| |||||   |||| || |||||||||||||||||| |||||||||||||||| ||||||| ||||| ||  |||||||||| || |    
T  23351351 gagatgaacagccaccgagtttaagtttacaaagagattttgaatgaatgttggttttaaggctttcaatctttatgcaatcttctaaatctagaaatat 23351450  T
Q  114 aagatcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataaatctggg 213  Q
    |||   ||||||||||||||| || | ||||||||||| |||||||||||||||| | ||||||||||| | ||||||||||||| ||||||| ||||||    
T  23351451 aagtcgagggagagaaaagatggatggatggagctgacgcaggctttcacattgacagagatatactctttcaagatttgtagccctagataagtctggg 23351550  T
Q  214 atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaa 286  Q
    ||||||||||||| ||||||||||| ||||  || |    |||||||||||||||||||||| ||||||||||    
T  23351551 atctcaatcagatctttggaggattgaagcataattgatcttagattcacaagattctgtaataagaaataaa 23351623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 23462679 - 23462951
Alignment:
Q  14 gagatgaacaaccatcgagtaagagttcacgaagagattttgaatgaattttggttttaaggcttttaatctttttgcaacctcgtaaatctagatatct 113  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||| |||  || ||||||||| ||| |||||||||      
T  23462679 gagatgaacaaccattgagtaagagttgacgaagagattttgaatgaatgtttgttttaaggctttcaatacttatgcaacctcttaagtctagatattg 23462778  T
Q  114 aagatcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataaatctggg 213  Q
    ||| | ||||||||||||||| || | |||||| |||| || |||||||||||   | |||  |||   |  ||||||||||||| ||||||| ||||||    
T  23462779 aagttgagggagagaaaagatggatggatggagttgacgcaagctttcacattccgagagaagtacaacaacaagatttgtagccctagataagtctggg 23462878  T
Q  214 atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaa 286  Q
    ||||||||||||| ||||||||||  |||||||||| |  |||||||||||||||||||||||||||||||||    
T  23462879 atctcaatcagatctttggaggatcgaagccaaagtgttcttagattcacaagattctgtaacaagaaataaa 23462951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 23439253 - 23439526
Alignment:
Q  14 gagatgaacaaccatcgagtaagagttcacgaagagattttgaatgaattttggttttaaggcttttaatctttttgcaacctcgtaaatctagatatct 113  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||| |||  |  ||||||||| |||||||||| || |    
T  23439253 gagatgaacaaccatccagtaagagttcacgaagagattttgaatgaatgttcgttttaaggctttcaatagtaatgcaacctcctaaatctagaaatgt 23439352  T
Q  114 aagatcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataaatctggg 213  Q
    |||   ||||||||||||||| || | ||||||||||| || ||||||||||||| | ||| || ||||   ||||||||||||| ||||||| || |||    
T  23439353 aagtcgagggagagaaaagatggatggatggagctgacgcaagctttcacattgacagagagatgctcttccaagatttgtagccctagataagtcgggg 23439452  T
Q  214 atctcaatcagatttttggaggattcaagccaaagtatgtttaga-ttcacaagattctgtaacaagaaataaa 286  Q
    ||||||||||||| ||||||| | | ||| || | | || ||||| || |||||||||||||||||||||||||    
T  23439453 atctcaatcagatctttggagtaattaaggcagattgtgattagattttacaagattctgtaacaagaaataaa 23439526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 358 - 513
Target Start/End: Original strand, 23453728 - 23453887
Alignment:
Q  358 ataattaagcatatatagagactttttaagaataagcattagacttcctttcatacttcaacaaattatc----aagtatatccaaacacatttgtacct 453  Q
    ||||||||||||| |||||||||| ||||||||  |||| ||||||||| |||||| | || |||||| |    | ||||||||||||||||||||||||    
T  23453728 ataattaagcataaatagagacttcttaagaatgtgcatcagacttcctctcatacctaaataaattaacacgtacgtatatccaaacacatttgtacct 23453827  T
Q  454 gaactccaacccagagctttttaagcttgctatgactcaagtgaagctctatgagcattt 513  Q
    |||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  23453828 gaactccatcccagagctttttaagcttgctatgacccatgtgaagctctatgagcattt 23453887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 46 - 286
Target Start/End: Original strand, 23471821 - 23472061
Alignment:
Q  46 agagattttgaatgaattttggttttaaggcttttaatctttttgcaacctcgtaaatctagatatctaagatcagggagagaaaagatcgaagaatgga 145  Q
    ||||| ||||||||||| ||||||||||||||||  |||||| ||||||||| |||||||||     ||||   |||||||||||||||  | | |||||    
T  23471821 agagaatttgaatgaatattggttttaaggctttcgatctttatgcaacctcctaaatctagtacaataagtcgagggagagaaaagatgtatggatgga 23471920  T
Q  146 gctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataaatctgggatctcaatcagatttttggaggattcaagcca 245  Q
    | |||| |||||||||||||| | | |||| |||| | | ||||||||||||| ||||||| | ||||||||||||||||| ||||||| | | ||| |     
T  23471921 gatgacgcaggctttcacatttatagagatgtactttttcaagatttgtagccctagataagtttgggatctcaatcagatctttggagtaattaaggct 23472020  T
Q  246 aagtatgtttagattcacaagattctgtaacaagaaataaa 286  Q
    || | || |||||||||||||||||||||||||||||||||    
T  23472021 aaatgtgattagattcacaagattctgtaacaagaaataaa 23472061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 427 - 513
Target Start/End: Original strand, 23472187 - 23472272
Alignment:
Q  427 caagtatatccaaacacatttgtacctgaactccaacccagagctttttaagcttgctatgactcaagtgaagctctatgagcattt 513  Q
    |||||| |||||||||  ||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||  |||||||    
T  23472187 caagtacatccaaacat-tttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctctacaagcattt 23472272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 427 - 513
Target Start/End: Original strand, 23439651 - 23439737
Alignment:
Q  427 caagtatatccaaacacatttgtacctgaactccaacccagagctttttaagcttgctatgactcaagtgaagctctatgagcattt 513  Q
    |||||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||||| ||| |  ||||||||  |||||||    
T  23439651 caagtatatccaaacatatttgtacctgaactccatctcagagatttttaagcttgctatgagtcatgctaagctctacaagcattt 23439737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 442 - 492
Target Start/End: Original strand, 23463037 - 23463087
Alignment:
Q  442 acatttgtacctgaactccaacccagagctttttaagcttgctatgactca 492  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23463037 acatttgtacctgaactccatcccagagctttttaagcttgctatgactca 23463087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 446 - 513
Target Start/End: Original strand, 23351699 - 23351766
Alignment:
Q  446 ttgtacctgaactccaacccagagctttttaagcttgctatgactcaagtgaagctctatgagcattt 513  Q
    |||||||||||||||| ||||||||||||||||||||| |||| ||| ||||||||| || |||||||    
T  23351699 ttgtacctgaactccatcccagagctttttaagcttgcaatgagtcatgtgaagctcaataagcattt 23351766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 442 - 513
Target Start/End: Original strand, 23386035 - 23386106
Alignment:
Q  442 acatttgtacctgaactccaacccagagctttttaagcttgctatgactcaagtgaagctctatgagcattt 513  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||| ||| |  ||||||||  |||||||    
T  23386035 acatttgtacctgaactccatcccagagctttttaagcttgctttgattcatgcaaagctctacaagcattt 23386106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 36001906 - 36001953
Alignment:
Q  45 aagagattttgaatgaattttggttttaaggcttttaatctttttgca 92  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||    
T  36001906 aagagattttgaatgaatgttggttttcaggcttttaatctttttgca 36001953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 442 - 484
Target Start/End: Original strand, 23404406 - 23404448
Alignment:
Q  442 acatttgtacctgaactccaacccagagctttttaagcttgct 484  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  23404406 acatttgtacctgaactccatcccagagctttttaagcttgct 23404448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 10824 - 11096
Alignment:
Q  14 gagatgaacaaccatcgagtaagagttcacgaagagattttgaatgaattttggttttaaggcttttaatctttttgcaacctcgtaaatctagatatct 113  Q
    ||||||||||||||| |||||| ||| |||| ||||||||||||||||| | || ||||||||||| ||| ||| ||||||||||||||||||||||       
T  10824 gagatgaacaaccattgagtaaaagtacacggagagattttgaatgaatctcggctttaaggctttcaatatttatgcaacctcgtaaatctagataatc 10923  T
Q  114 aagatcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataaatctggg 213  Q
    |||   ||||||||||| ||| || | ||||||||||| |||||||| |||||||   |||||||  || ||||||||||||||| | ||||| |||| |    
T  10924 aagtcgagggagagaaaggatggatgtatggagctgacgcaggcttttacattgagtgagatatagactttgaagatttgtagccctggataagtctgag 11023  T
Q  214 atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaa 286  Q
    | |||||| |||| ||| |||  |  |||| |||| |   ||||||||||||||| |||||||||||||||||    
T  11024 agctcaatgagatctttagagtttggaagcgaaagaactgttagattcacaagatcctgtaacaagaaataaa 11096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 427 - 514
Target Start/End: Original strand, 11183 - 11270
Alignment:
Q  427 caagtatatccaaacacatttgtacctgaactccaacccagagctttttaagcttgctatgactcaagtgaagctctatgagcatttt 514  Q
    |||||||||||||||| |||| ||||||||||||  ||||||||||||||||||||||||||| ||| |||||||||| |||||||||    
T  11183 caagtatatccaaacatatttttacctgaactccttcccagagctttttaagcttgctatgacgcaattgaagctctacgagcatttt 11270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 12897603 - 12897553
Alignment:
Q  46 agagattttgaatgaattttggttttaaggcttttaatctttttgcaacct 96  Q
    ||||||||||||||||| || ||||| ||||||| ||||||||||||||||    
T  12897603 agagattttgaatgaatgttagttttcaggctttcaatctttttgcaacct 12897553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University