View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4738_high_4 (Length: 269)
Name: NF4738_high_4
Description: NF4738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4738_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 162 - 253
Target Start/End: Complemental strand, 33016497 - 33016406
Alignment:
| Q |
162 |
ttctaaattaaacttccatattatggagaaataaggttcacattttggttgagagatagatgtgttaatatttagtatttgacaatgattag |
253 |
Q |
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| T |
33016497 |
ttctaaattaaacttccatattatggagaaataaggttcacattttggttgagagatagatgtgttaatatttagtatttgacaatgattag |
33016406 |
T |
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Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 33017287 - 33017225
Alignment:
| Q |
9 |
attatacttttggttcaccgaggagaaataaaaccactaataatacattattcacggattgtt |
71 |
Q |
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| T |
33017287 |
attatacttttggttcaccgaagagaaataaaaccactaataatacattattcacggattgtt |
33017225 |
T |
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