View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4738_low_1 (Length: 532)
Name: NF4738_low_1
Description: NF4738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4738_low_1 |
 | |
|
| [»] scaffold0201 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 20)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 14 - 513
Target Start/End: Original strand, 23498403 - 23498896
Alignment:
| Q |
14 |
gagatgaacaaccatcgagtaagagttcacgaagagattttgaatgaattttggttttaaggcttttaatctttttgcaacctcgtaaatctagatatct |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23498403 |
gagaagaacaaccatcgagtaagagttcacaaagagattttgaatgaatgttggttttaaggctttcaatctttttgcaacctcgtaaatctagatatct |
23498502 |
T |
|
| Q |
114 |
aagatcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataaatctggg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23498503 |
aagatcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataagtctggg |
23498602 |
T |
|
| Q |
214 |
atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaaaacgacattgcttagaaaccaataaat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
23498603 |
atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaaaacaccattg---agaaaccgttaaat |
23498699 |
T |
|
| Q |
314 |
tcacaatcatgtgcgagtgttgattaaaagagaaactaaacctaataattaagcatatatagagactttttaagaataagcattagacttcctttcatac |
413 |
Q |
| |
|
||| ||||| ||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
23498700 |
tcataatcacgtgtgagtgttgattaaaagagaaactaaacc---taattaagcataaatagagactttttaagaatgagcattagacttcctctcatac |
23498796 |
T |
|
| Q |
414 |
ttcaacaaattatcaagtatatccaaacacatttgtacctgaactccaacccagagctttttaagcttgctatgactcaagtgaagctctatgagcattt |
513 |
Q |
| |
|
||| |||||||| |||||||||||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23498797 |
ttcgacaaattaacaagtatatccaaacagaattgtacctgaactccatcccatagctttttaagcttgctatgactcaagtgaagctctatgagcattt |
23498896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 20 - 289
Target Start/End: Original strand, 23477960 - 23478229
Alignment:
| Q |
20 |
aacaaccatcgagtaagagttcacgaagagattttgaatgaattttggttttaaggcttttaatctttttgcaacctcgtaaatctagatatctaagatc |
119 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23477960 |
aacaaccatcaagtaagagttcacgaagagattttgaatgaatgttggttttaaggctttcaatctttttgcaacctcgtaaatctagatatctaagatc |
23478059 |
T |
|
| Q |
120 |
agggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataaatctgggatctca |
219 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23478060 |
agggagagaaaagatagaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataagtctgggatctca |
23478159 |
T |
|
| Q |
220 |
atcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaaaac |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23478160 |
atcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaaaac |
23478229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 23446654 - 23446929
Alignment:
| Q |
14 |
gagatgaacaaccatcgagtaagagttcacgaagagattttgaatgaattttggttttaaggcttttaatctttttgcaacctcgtaaatctagatatct |
113 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
23446654 |
gagatgcacaaccatcgagtaagagttcacgaagagattttgaatgaatgttggttttaaggctttcaatctttttgcagtctcgtaaatctagatatct |
23446753 |
T |
|
| Q |
114 |
aagatcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataaatctggg |
213 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23446754 |
aagatcagggagagaaaagatggaaggatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataagtctggg |
23446853 |
T |
|
| Q |
214 |
atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaaaac |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23446854 |
atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaaaaagaaataaaaac |
23446929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 23453434 - 23453725
Alignment:
| Q |
18 |
tgaacaaccatcgagtaagagttcacgaagagattttgaatgaattttggttttaaggcttttaatctttttgcaacctcgtaaatctagatatctaaga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23453434 |
tgaacaaccatcgagtaagagttcacgaagagattttgaatgaatgttggttttaaggctttcaatctttttgcaacctcgtaaatctagatatctaaga |
23453533 |
T |
|
| Q |
118 |
tcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataaatctgggatct |
217 |
Q |
| |
|
||||||||| | ||||| |||| ||||||||||| ||||||||||||||||||| | |||| ||||||||||||| |||||||||| |||||||||| |
|
|
| T |
23453534 |
tcagggagacagaagatggaaggatggagctgacacaggctttcacattgaaaa----acactccatgaagatttgtatccttagataagtctgggatct |
23453629 |
T |
|
| Q |
218 |
caatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaaaacgacattgcttagaaaccaataaat |
313 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||| ||||| |
|
|
| T |
23453630 |
caatcagatctttggaggattcaagccggagtatgtttagattcacaagattctgtaacaataaataaacatgacattgcttagaaaccattaaat |
23453725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 23385689 - 23385961
Alignment:
| Q |
14 |
gagatgaacaaccatcgagtaagagttcacgaagagattttgaatgaattttggttttaaggcttttaatctttttgcaacctcgtaaatctagatatct |
113 |
Q |
| |
|
||||||||||||||| |||||| ||| ||| ||||||||||||||||| |||| ||||||||||| ||||||| ||||||||| ||||||||||||| | |
|
|
| T |
23385689 |
gagatgaacaaccattgagtaaaagtacacagagagattttgaatgaatgttggatttaaggctttcaatctttatgcaacctcttaaatctagatatat |
23385788 |
T |
|
| Q |
114 |
aagatcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataaatctggg |
213 |
Q |
| |
|
|| ||||||||||||||| || | ||||||||||| |||||||||||||| | |||| || ||| | ||||||| ||||| ||||||| |||||| |
|
|
| T |
23385789 |
aattcgagggagagaaaagatggatggatggagctgacgcaggctttcacattccgagagatgtattctgtcaagatttatagccctagataagtctggg |
23385888 |
T |
|
| Q |
214 |
atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaa |
286 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23385889 |
atctcaatcagatctttggaggattcaagccaaagtactcttagattcacaagattctgtaacaagaaataaa |
23385961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 342 - 513
Target Start/End: Original strand, 23446949 - 23447117
Alignment:
| Q |
342 |
agagaaactaaacctaataattaagcatatatagagactttttaagaataagcattagacttcctttcatacttcaacaaattatcaagtatatccaaac |
441 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
23446949 |
agagaaactaaacctaat---taagcataaatagagactttttaagaatgagcattagacttcctctcatacttcaacaaattaacaagtatatccaaac |
23447045 |
T |
|
| Q |
442 |
acatttgtacctgaactccaacccagagctttttaagcttgctatgactcaagtgaagctctatgagcattt |
513 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23447046 |
acatttgtacctgaactccatcccatagctttttaagcttgctatgactcaagtgaagctctatgagcattt |
23447117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 342 - 513
Target Start/End: Original strand, 23478249 - 23478417
Alignment:
| Q |
342 |
agagaaactaaacctaataattaagcatatatagagactttttaagaataagcattagacttcctttcatacttcaacaaattatcaagtatatccaaac |
441 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| |||||| ||||||||||||||| |
|
|
| T |
23478249 |
agagaaactaaacctaat---taagcataaatagagactttttaagaatgagcattagacttcctctcatacttcaaaaaattaacaagtatatccaaac |
23478345 |
T |
|
| Q |
442 |
acatttgtacctgaactccaacccagagctttttaagcttgctatgactcaagtgaagctctatgagcattt |
513 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23478346 |
acatttgtacctgaactccatcccatagctttttaagcttgctatgactcaagtgaagctctatgagcattt |
23478417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 23404060 - 23404332
Alignment:
| Q |
14 |
gagatgaacaaccatcgagtaagagttcacgaagagattttgaatgaattttggttttaaggcttttaatctttttgcaacctcgtaaatctagatatct |
113 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||||||||||||||||| || ||||||||||||| ||| || ||||||||| ||| ||||||||| |
|
|
| T |
23404060 |
gagatgaacaaccattgagtaagagttgacaaagagattttgaatgaatgtttgttttaaggctttcaatacttatgcaacctcttaagtctagatattg |
23404159 |
T |
|
| Q |
114 |
aagatcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataaatctggg |
213 |
Q |
| |
|
||| | ||||||||||||||| || | |||||| |||| || ||||||||||| | ||| ||| || ||||||||||||| ||||||| |||||| |
|
|
| T |
23404160 |
aagttgagggagagaaaagatggatggatggagttgacgcaagctttcacattccgagagaagtacaatagcaagatttgtagccctagataagtctggg |
23404259 |
T |
|
| Q |
214 |
atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaa |
286 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
23404260 |
atctcaatcagatctttggaggattcaagccaaagtgttcttagattcacaagattctgtaacaagaaataaa |
23404332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 23351351 - 23351623
Alignment:
| Q |
14 |
gagatgaacaaccatcgagtaagagttcacgaagagattttgaatgaattttggttttaaggcttttaatctttttgcaacctcgtaaatctagatatct |
113 |
Q |
| |
|
|||||||||| ||| ||||| |||| || |||||||||||||||||| |||||||||||||||| ||||||| ||||| || |||||||||| || | |
|
|
| T |
23351351 |
gagatgaacagccaccgagtttaagtttacaaagagattttgaatgaatgttggttttaaggctttcaatctttatgcaatcttctaaatctagaaatat |
23351450 |
T |
|
| Q |
114 |
aagatcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataaatctggg |
213 |
Q |
| |
|
||| ||||||||||||||| || | ||||||||||| |||||||||||||||| | ||||||||||| | ||||||||||||| ||||||| |||||| |
|
|
| T |
23351451 |
aagtcgagggagagaaaagatggatggatggagctgacgcaggctttcacattgacagagatatactctttcaagatttgtagccctagataagtctggg |
23351550 |
T |
|
| Q |
214 |
atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaa |
286 |
Q |
| |
|
||||||||||||| ||||||||||| |||| || | |||||||||||||||||||||| |||||||||| |
|
|
| T |
23351551 |
atctcaatcagatctttggaggattgaagcataattgatcttagattcacaagattctgtaataagaaataaa |
23351623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 23462679 - 23462951
Alignment:
| Q |
14 |
gagatgaacaaccatcgagtaagagttcacgaagagattttgaatgaattttggttttaaggcttttaatctttttgcaacctcgtaaatctagatatct |
113 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||| ||| || ||||||||| ||| ||||||||| |
|
|
| T |
23462679 |
gagatgaacaaccattgagtaagagttgacgaagagattttgaatgaatgtttgttttaaggctttcaatacttatgcaacctcttaagtctagatattg |
23462778 |
T |
|
| Q |
114 |
aagatcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataaatctggg |
213 |
Q |
| |
|
||| | ||||||||||||||| || | |||||| |||| || ||||||||||| | ||| ||| | ||||||||||||| ||||||| |||||| |
|
|
| T |
23462779 |
aagttgagggagagaaaagatggatggatggagttgacgcaagctttcacattccgagagaagtacaacaacaagatttgtagccctagataagtctggg |
23462878 |
T |
|
| Q |
214 |
atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaa |
286 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
23462879 |
atctcaatcagatctttggaggatcgaagccaaagtgttcttagattcacaagattctgtaacaagaaataaa |
23462951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 23439253 - 23439526
Alignment:
| Q |
14 |
gagatgaacaaccatcgagtaagagttcacgaagagattttgaatgaattttggttttaaggcttttaatctttttgcaacctcgtaaatctagatatct |
113 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||| ||| | ||||||||| |||||||||| || | |
|
|
| T |
23439253 |
gagatgaacaaccatccagtaagagttcacgaagagattttgaatgaatgttcgttttaaggctttcaatagtaatgcaacctcctaaatctagaaatgt |
23439352 |
T |
|
| Q |
114 |
aagatcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataaatctggg |
213 |
Q |
| |
|
||| ||||||||||||||| || | ||||||||||| || ||||||||||||| | ||| || |||| ||||||||||||| ||||||| || ||| |
|
|
| T |
23439353 |
aagtcgagggagagaaaagatggatggatggagctgacgcaagctttcacattgacagagagatgctcttccaagatttgtagccctagataagtcgggg |
23439452 |
T |
|
| Q |
214 |
atctcaatcagatttttggaggattcaagccaaagtatgtttaga-ttcacaagattctgtaacaagaaataaa |
286 |
Q |
| |
|
||||||||||||| ||||||| | | ||| || | | || ||||| || ||||||||||||||||||||||||| |
|
|
| T |
23439453 |
atctcaatcagatctttggagtaattaaggcagattgtgattagattttacaagattctgtaacaagaaataaa |
23439526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 358 - 513
Target Start/End: Original strand, 23453728 - 23453887
Alignment:
| Q |
358 |
ataattaagcatatatagagactttttaagaataagcattagacttcctttcatacttcaacaaattatc----aagtatatccaaacacatttgtacct |
453 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| |||| ||||||||| |||||| | || |||||| | | |||||||||||||||||||||||| |
|
|
| T |
23453728 |
ataattaagcataaatagagacttcttaagaatgtgcatcagacttcctctcatacctaaataaattaacacgtacgtatatccaaacacatttgtacct |
23453827 |
T |
|
| Q |
454 |
gaactccaacccagagctttttaagcttgctatgactcaagtgaagctctatgagcattt |
513 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
23453828 |
gaactccatcccagagctttttaagcttgctatgacccatgtgaagctctatgagcattt |
23453887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 46 - 286
Target Start/End: Original strand, 23471821 - 23472061
Alignment:
| Q |
46 |
agagattttgaatgaattttggttttaaggcttttaatctttttgcaacctcgtaaatctagatatctaagatcagggagagaaaagatcgaagaatgga |
145 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||| |||||| ||||||||| ||||||||| |||| ||||||||||||||| | | ||||| |
|
|
| T |
23471821 |
agagaatttgaatgaatattggttttaaggctttcgatctttatgcaacctcctaaatctagtacaataagtcgagggagagaaaagatgtatggatgga |
23471920 |
T |
|
| Q |
146 |
gctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataaatctgggatctcaatcagatttttggaggattcaagcca |
245 |
Q |
| |
|
| |||| |||||||||||||| | | |||| |||| | | ||||||||||||| ||||||| | ||||||||||||||||| ||||||| | | ||| | |
|
|
| T |
23471921 |
gatgacgcaggctttcacatttatagagatgtactttttcaagatttgtagccctagataagtttgggatctcaatcagatctttggagtaattaaggct |
23472020 |
T |
|
| Q |
246 |
aagtatgtttagattcacaagattctgtaacaagaaataaa |
286 |
Q |
| |
|
|| | || ||||||||||||||||||||||||||||||||| |
|
|
| T |
23472021 |
aaatgtgattagattcacaagattctgtaacaagaaataaa |
23472061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 427 - 513
Target Start/End: Original strand, 23472187 - 23472272
Alignment:
| Q |
427 |
caagtatatccaaacacatttgtacctgaactccaacccagagctttttaagcttgctatgactcaagtgaagctctatgagcattt |
513 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||| ||||||| |
|
|
| T |
23472187 |
caagtacatccaaacat-tttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctctacaagcattt |
23472272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 427 - 513
Target Start/End: Original strand, 23439651 - 23439737
Alignment:
| Q |
427 |
caagtatatccaaacacatttgtacctgaactccaacccagagctttttaagcttgctatgactcaagtgaagctctatgagcattt |
513 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||||| ||| | |||||||| ||||||| |
|
|
| T |
23439651 |
caagtatatccaaacatatttgtacctgaactccatctcagagatttttaagcttgctatgagtcatgctaagctctacaagcattt |
23439737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 442 - 492
Target Start/End: Original strand, 23463037 - 23463087
Alignment:
| Q |
442 |
acatttgtacctgaactccaacccagagctttttaagcttgctatgactca |
492 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23463037 |
acatttgtacctgaactccatcccagagctttttaagcttgctatgactca |
23463087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 446 - 513
Target Start/End: Original strand, 23351699 - 23351766
Alignment:
| Q |
446 |
ttgtacctgaactccaacccagagctttttaagcttgctatgactcaagtgaagctctatgagcattt |
513 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||| ||| ||||||||| || ||||||| |
|
|
| T |
23351699 |
ttgtacctgaactccatcccagagctttttaagcttgcaatgagtcatgtgaagctcaataagcattt |
23351766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 442 - 513
Target Start/End: Original strand, 23386035 - 23386106
Alignment:
| Q |
442 |
acatttgtacctgaactccaacccagagctttttaagcttgctatgactcaagtgaagctctatgagcattt |
513 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||| ||| | |||||||| ||||||| |
|
|
| T |
23386035 |
acatttgtacctgaactccatcccagagctttttaagcttgctttgattcatgcaaagctctacaagcattt |
23386106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 36001906 - 36001953
Alignment:
| Q |
45 |
aagagattttgaatgaattttggttttaaggcttttaatctttttgca |
92 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
36001906 |
aagagattttgaatgaatgttggttttcaggcttttaatctttttgca |
36001953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 442 - 484
Target Start/End: Original strand, 23404406 - 23404448
Alignment:
| Q |
442 |
acatttgtacctgaactccaacccagagctttttaagcttgct |
484 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23404406 |
acatttgtacctgaactccatcccagagctttttaagcttgct |
23404448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 10824 - 11096
Alignment:
| Q |
14 |
gagatgaacaaccatcgagtaagagttcacgaagagattttgaatgaattttggttttaaggcttttaatctttttgcaacctcgtaaatctagatatct |
113 |
Q |
| |
|
||||||||||||||| |||||| ||| |||| ||||||||||||||||| | || ||||||||||| ||| ||| |||||||||||||||||||||| |
|
|
| T |
10824 |
gagatgaacaaccattgagtaaaagtacacggagagattttgaatgaatctcggctttaaggctttcaatatttatgcaacctcgtaaatctagataatc |
10923 |
T |
|
| Q |
114 |
aagatcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataaatctggg |
213 |
Q |
| |
|
||| ||||||||||| ||| || | ||||||||||| |||||||| ||||||| ||||||| || ||||||||||||||| | ||||| |||| | |
|
|
| T |
10924 |
aagtcgagggagagaaaggatggatgtatggagctgacgcaggcttttacattgagtgagatatagactttgaagatttgtagccctggataagtctgag |
11023 |
T |
|
| Q |
214 |
atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaa |
286 |
Q |
| |
|
| |||||| |||| ||| ||| | |||| |||| | ||||||||||||||| ||||||||||||||||| |
|
|
| T |
11024 |
agctcaatgagatctttagagtttggaagcgaaagaactgttagattcacaagatcctgtaacaagaaataaa |
11096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 427 - 514
Target Start/End: Original strand, 11183 - 11270
Alignment:
| Q |
427 |
caagtatatccaaacacatttgtacctgaactccaacccagagctttttaagcttgctatgactcaagtgaagctctatgagcatttt |
514 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| ||||||||| |
|
|
| T |
11183 |
caagtatatccaaacatatttttacctgaactccttcccagagctttttaagcttgctatgacgcaattgaagctctacgagcatttt |
11270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 12897603 - 12897553
Alignment:
| Q |
46 |
agagattttgaatgaattttggttttaaggcttttaatctttttgcaacct |
96 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||| |||||||||||||||| |
|
|
| T |
12897603 |
agagattttgaatgaatgttagttttcaggctttcaatctttttgcaacct |
12897553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University