View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4738_low_2 (Length: 370)
Name: NF4738_low_2
Description: NF4738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4738_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 36 - 351
Target Start/End: Complemental strand, 15331144 - 15330820
Alignment:
| Q |
36 |
acatcatcaacctattatatccatcacatcagtcttattttttctttctctctcaagatctatacactcatataggtgtacaccaaatattttcctataa |
135 |
Q |
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| T |
15331144 |
acatcatcaacctattatatccatcacatcggtcttattttttctttttctctcaagatctatacactcatataggtgtacaccaaata-tttcctataa |
15331046 |
T |
|
| Q |
136 |
ctatcttaagaggtcattgcaatggaatctaaacttcatgtgaacctaatttaagggttaagtaaacttgatatatat-----------nnnnnnncaca |
224 |
Q |
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| T |
15331045 |
ttatctt-agaggtcattgcaatggaatctaaacttcatgtgaacctaatttaagggttaagtaaacttgatatatataaaaaaataaaaaaaaaacaca |
15330947 |
T |
|
| Q |
225 |
tgatgaccccagtagtggtctcctttatgtatatccatccacactttcctttctttctaatccatcatcaagatgagtcacatgctttcttctctacctt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15330946 |
tgatgaccccagtagtggtctcctttatgtatatccatccacactttcctttctttctaatccatcatcaagatgagtcacatgctttcttctctatctt |
15330847 |
T |
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| Q |
325 |
tccttgtctaacttacaagctactttc |
351 |
Q |
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||||||||||||||||||||||||||| |
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| T |
15330846 |
tccttgtctaacttacaagctactttc |
15330820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 135
Target Start/End: Original strand, 36789327 - 36789366
Alignment:
| Q |
96 |
tatacactcatataggtgtacaccaaatattttcctataa |
135 |
Q |
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| T |
36789327 |
tatacactcatatgggtgtacaccaaacattttcctataa |
36789366 |
T |
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