View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4738_low_4 (Length: 340)
Name: NF4738_low_4
Description: NF4738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4738_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 36389063 - 36388870
Alignment:
| Q |
21 |
atcattggagagactaattctatccgggaataattttatagacctacccactcgcctttctctcacccgtaactcagttatgtgtttcaaaacattgaaa |
120 |
Q |
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| T |
36389063 |
atcattggagagactaattctatccgggaataattttatagacctacccactcgcctttctctcacccgtaactcaggtatgtgtttcaaaacattgaaa |
36388964 |
T |
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| Q |
121 |
tcaggtgtccatttttcccttctccttttccgtcccttcaaagaagacaaaacacctcacccaaagtaaaacataacacaattaagagaaacaa |
214 |
Q |
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| T |
36388963 |
tcaggtgtccatttttcccttctccttttccgtcccttcaaagaagacaaaacacctcacccaaagtaaaacataacacaattaagagaaacaa |
36388870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 36388794 - 36388753
Alignment:
| Q |
291 |
agccgcatatttacggtgctcgttgtagtttcgccctttgct |
332 |
Q |
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| T |
36388794 |
agccgcatatttacggtgctcgttgtagtttcgccttttgct |
36388753 |
T |
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