View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4739-Insertion-3 (Length: 920)
Name: NF4739-Insertion-3
Description: NF4739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4739-Insertion-3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 804; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 804; E-Value: 0
Query Start/End: Original strand, 8 - 920
Target Start/End: Original strand, 48461152 - 48462061
Alignment:
| Q |
8 |
cgaggtcgttcatttctttagtgtttttaggaaactcccaatccaagtcaattccattgaatccaaatgtacgagcaacgttgattgtagagttaatgaa |
107 |
Q |
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| T |
48461152 |
cgaggtcgttcatttctttagtgtttttaggaaactcccaatccaagtcaattccatcgaatccaaatgtacgagcaacgtcgattgtagagttaatgaa |
48461251 |
T |
|
| Q |
108 |
ggcggcacgtgcgggtggatcggaggcgatgaaggcgaacaaggatgaattgctacctgcacctccaatggaaaagagagtagctgcaggaggggatttg |
207 |
Q |
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| T |
48461252 |
ggcggcacatgcgggtggatcggaggcgatgaaggccaacaaggatgaattgctacctgcacctccaatggaaaagagagtagctgcaggaggggatttt |
48461351 |
T |
|
| Q |
208 |
gttttgaaggttttggtgaaagtgttgagggataagatttgagaagatgaaatttcaagtttgtaggtgatgttgttgggtgtgaggaatgagtagaaga |
307 |
Q |
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| T |
48461352 |
gttttgaaggttttggtgaaagtgttgagggataagatttgagaagatgaaatttcaagtttgtaggtgatgttgttgggtgtgaggaatgagtagaaga |
48461451 |
T |
|
| Q |
308 |
tgtgagtaaagagtgatgtgtctactatagttggagggaaaaatggattttctaaccagtaaatacctttcacacgtgtgat---tgatgatgatgatgt |
404 |
Q |
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| T |
48461452 |
tgtgagtaaagagtgatgtgtctactgtagttggagggaaaaatggattttctaaccagtaaatacctttcacacgtgtgattgatgatgatgatgatgt |
48461551 |
T |
|
| Q |
405 |
ggaacttttggtggctagggctaagagaattaatgctaaagtgagtaaatgtttcaggttgaggatgttagccatgacaaaatctaaataatgtttttgt |
504 |
Q |
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| T |
48461552 |
ggaacttttggtggctagggctaagagaattaatgctaaagtgagtaaatgtttcaggttgaggatgttagccatgacaaaatctaaataatgtttttgt |
48461651 |
T |
|
| Q |
505 |
tagattttgttgtttttgcttgaggggtgagttcttctagctataattaaggaacgtatatatagttcatatgaaggatgtgtgtgttctacttctacat |
604 |
Q |
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| T |
48461652 |
tagattttgttgtttttgcttgaggggtgagttcttctggctataattaaggaacgtatatatagttcatatgaaggatgtgtgtgttctacttctacat |
48461751 |
T |
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| Q |
605 |
tcttaaatggcataatgttttgttattggttgcttttggttcaaattaaatttcaactcaaaggtttccgcgttgcatggttcaaaaaattcatttaaga |
704 |
Q |
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| T |
48461752 |
tcttaaatggcataatgttttgttattggttgcttttggttcaaattaaatttcaactcaaaggtttccgcgttgcatggttcaaaaaattcatttaaga |
48461851 |
T |
|
| Q |
705 |
atatttttacacatcaaaacttagggttggcatggtggtgtaaaatttgagatttagaagagtgtttaacaatttacgtgatggatctgtttgtaaaaga |
804 |
Q |
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| T |
48461852 |
atatttttacacatcaaaacttagggt--------tggtgtaaaatttgagatttagaagagtgtttaacaatttacgtgatggatctgtttgtaaaaga |
48461943 |
T |
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| Q |
805 |
ttttaattgaaccattcattagaggacggtgaaattcattcc-aaatagagtatgcaag-aacttgaagtgtggaagnnnnnnnnnctcttatgatttct |
902 |
Q |
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| T |
48461944 |
ttttaattgaaccattcattagaggacggtgaaattcattccaaaatagagtatgcaagaaacttgaagtgtggaagaaaaaaagcctcttatgatttct |
48462043 |
T |
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| Q |
903 |
ccttttgtttgacaacta |
920 |
Q |
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| T |
48462044 |
ccttttgtttgacaacta |
48462061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 300 - 501
Target Start/End: Original strand, 48456000 - 48456210
Alignment:
| Q |
300 |
gtagaagatgtgagtaaagagtgatgtgtctactatagttggagggaaaaatggattttctaaccagtaaatacctttcacacgtgtgattgatgatgat |
399 |
Q |
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| T |
48456000 |
gtagaaaatgtgagtgaaaagtgatgtatctatggaagatggagggaaaagtgggttttctatccagtatatgcctttcacacgtgtggttgatgatggt |
48456099 |
T |
|
| Q |
400 |
gatg---------tggaacttttggtggctagggctaagagaattaatgctaaagtgagtaaatgtttcaggttgaggatgttagccatgacaaaatcta |
490 |
Q |
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| T |
48456100 |
gatggtgtgcttttggaacttttggcggctagggctaagagaattaatactaaagttaggaactgtttgagtttgaggaagtttgccatgacaaaatcta |
48456199 |
T |
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| Q |
491 |
aataatgtttt |
501 |
Q |
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| T |
48456200 |
tataatgtttt |
48456210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 48455698 - 48455927
Alignment:
| Q |
10 |
aggtcgttcatttctttagtgtttttaggaaactcccaatccaagtcaattccattgaatccaaatgtacgagcaacgttgattgtagagttaatgaagg |
109 |
Q |
| |
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||||| ||||||||||| ||| || |||||||||||||||| ||||| ||||||| ||||||||| || ||||| || | |||||||||||| ||||||| |
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| T |
48455698 |
aggtcattcatttcttttgtggttgtaggaaactcccaatcgaagtcgattccatcgaatccaaaggttcgagcgacttggattgtagagttgatgaagg |
48455797 |
T |
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| Q |
110 |
cggcacgtgcgggtggatcggaggcgatgaaggcgaacaaggatgaattgctacctgcacctccaatggaaaagagagtagctgcaggaggggatttggt |
209 |
Q |
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| T |
48455798 |
tagcacgtgccgtggggtcagaggcaatgaaagcaaagagtgtggaattgctagttgcacctccaatggaaaggagggtaggaatgggaggggttttagt |
48455897 |
T |
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| Q |
210 |
tttgaaggttttggtgaaagtgttgaggga |
239 |
Q |
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| T |
48455898 |
tttgaaagtgttggtgaaagtagtgaggga |
48455927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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