View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4739-Insertion-4 (Length: 829)
Name: NF4739-Insertion-4
Description: NF4739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4739-Insertion-4 |
 | |
|
| [»] scaffold1408 (3 HSPs) |
| | |
|
| [»] scaffold0428 (4 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 649; Significance: 0; HSPs: 31)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 7 - 683
Target Start/End: Original strand, 33644670 - 33645346
Alignment:
| Q |
7 |
acctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33644670 |
acctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggttattcaatacaaatagacgaatctc |
33644769 |
T |
|
| Q |
107 |
ctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccacgtcgtaggcgggttccatcgtcgaccattat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33644770 |
ctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccacgtcgtaggcgggttccatcgtcgaccattat |
33644869 |
T |
|
| Q |
207 |
ggaactagttttacctaagaattcctatatgaatttttggaaaataagtgttccagtaattctcgatggtggtcttattacgaccaaatcaagtcaccta |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33644870 |
ggaactagttttacctaagaattcctatatgaatttttggagaataagtgttccagtaattctcgatggtggtcttattacgaccaaatcaagtcaccta |
33644969 |
T |
|
| Q |
307 |
tggataatctacttccctcgagattcctataatgaatttggaaaaatccattttgacatttttgagggggaaggtttgggtatgaaggtgaagagttgtg |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
33644970 |
tggataatctacttccctcgagattcctataatgaatttggaagaatctattttgacatttttgagagggaaggtctgggtatgaaggtgaagagttgtg |
33645069 |
T |
|
| Q |
407 |
ggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtgtaaggtttgggtatgaa |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33645070 |
ggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtgtaaggtttgggtatgaa |
33645169 |
T |
|
| Q |
507 |
gatgaggcagaaccacaaccgcagccataaccacttcacagataagaaggtaatgaagagtctcaacaaattgaacaagaatcatctatctgttgccacc |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33645170 |
gatgaggcagaaccacaaccgcagccataaccacttcacagataagaaggtaatgaagagtctcaacaaattgaacaagaatcatctatctgttgccacc |
33645269 |
T |
|
| Q |
607 |
tactcattggttgtcatcaacctgcaaaatacaaacatattttcatgggtatatgttctgcttcataccatgaagtg |
683 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33645270 |
tactcattgtttgtcatcaacctgcaaaatacaaacatattttcatgggtatatgttctgcttcataccatgaagtg |
33645346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 11 - 457
Target Start/End: Complemental strand, 9166635 - 9166189
Alignment:
| Q |
11 |
actttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctat |
110 |
Q |
| |
|
|||||||||||| ||||||||| || ||||||| |||||||||||||||||||||||||| || |||| || ||| |||| ||||||| | ||||||| |
|
|
| T |
9166635 |
actttgataggattcaaattgttacgccaggaattgaaataccaagttggatcaacaatcggagcgtggatggttcgataccaatagacctaactcctat |
9166536 |
T |
|
| Q |
111 |
tatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccacgtcgtaggcgggttccatcgtcgaccattatggaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| || | || || ||||| || || ||||||| |
|
|
| T |
9166535 |
tatgcatgacaataacaataatatcattggctttgtatgttgtgcagtattctccatggcacctcgtggtgaggggttttcatcgccggcccgtatggaa |
9166436 |
T |
|
| Q |
211 |
ctagtttta---cctaagaattcctatatgaatttttggaaaataagtgttccagtaattctcgatggtggtcttattacgaccaaatcaagtcacctat |
307 |
Q |
| |
|
|| ||||| |||| ||||| ||| || ||| | | || |||| ||||||||| |||| |||| || ||||||||| |||||||||| |
|
|
| T |
9166435 |
ctggttttcgatcctattgattcccataagataagttgta---tgagggttcaagtaattctgaatggatttcttgttttgaccaaatccagtcacctat |
9166339 |
T |
|
| Q |
308 |
ggataatctacttccctcgagattcctataatgaatttggaaaaatccattttgacatttttgagggggaaggtttgggtatgaaggtgaagagttgtgg |
407 |
Q |
| |
|
||||||||||| |||| ||||| ||||| ||||||||||||||||||||||||||||| || ||| |||||||||| |||||||||||||| |||||| |
|
|
| T |
9166338 |
ggataatctacctcccccgagagtcctacgatgaatttggaaaaatccattttgacattattcggggtgaaggtttggatatgaaggtgaagacttgtgg |
9166239 |
T |
|
| Q |
408 |
gtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatga |
457 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
9166238 |
ataccgttgggtatgtaaacaagacctacaagagttcaacttaacgatga |
9166189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 247 - 493
Target Start/End: Complemental strand, 33387810 - 33387565
Alignment:
| Q |
247 |
aaaataagtgttccagtaattctcgatggtggtcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttg |
346 |
Q |
| |
|
||||| ||||||||||| |||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||| |
|
|
| T |
33387810 |
aaaatgagtgttccagtcattctcaatggaggtcttgttacgaccaaatcaagtcacctatggataatctacttcccacgagagtcctcggatgaatttg |
33387711 |
T |
|
| Q |
347 |
gaaaaatccattttgacatttttgagggggaaggtttgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaa |
446 |
Q |
| |
|
|||| ||| ||||||||||||| ||||| ||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
33387710 |
gaaatatctgttttgacatttttaaggggcaagctttgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaa |
33387611 |
T |
|
| Q |
447 |
cttaacaatgatgaatcacaaaaatatccttagctccgaagtgtaag |
493 |
Q |
| |
|
|||| ||||||| |||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
33387610 |
cttaccaatgataaatcacgaaaat-tccttggctccgaagtgtaag |
33387565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 279 - 493
Target Start/End: Complemental strand, 33285215 - 33285002
Alignment:
| Q |
279 |
tcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaaaaatccattttgacatttttgagggggaa |
378 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| || || |||| |||||| || |||||| ||||||| || | ||||| ||| ||| ||| |
|
|
| T |
33285215 |
tcttattacgaccaaatcaagtcatctatggataatctacctctctagagagtcctatgataaatttgaaaaaatcagttgttacattgttgggggtgaa |
33285116 |
T |
|
| Q |
379 |
ggtttgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatcctta |
478 |
Q |
| |
|
| |||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
33285115 |
gatttgggtatggaggtgaacagttgtggatatcgttgggtatgtaaacaagacctacaagagttcaatttaacaatgatgaatcac-aaaatatccttg |
33285017 |
T |
|
| Q |
479 |
gctccgaagtgtaag |
493 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
33285016 |
gctccgaagtgtaag |
33285002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 262 - 464
Target Start/End: Complemental strand, 33304119 - 33303917
Alignment:
| Q |
262 |
gtaattctcgatggtggtcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaaaaatccattttg |
361 |
Q |
| |
|
||||||||| |||| |||||| ||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| ||||||||||||| |
|
|
| T |
33304119 |
gtaattctcaatggaggtcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagtcctatagtgaatttgaaaaaatccatttta |
33304020 |
T |
|
| Q |
362 |
acatttttgagggggaaggtttgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaa |
461 |
Q |
| |
|
| ||||||||||| |||| ||| || || ||||||||||||| |||||||| |||||||||||| ||||||| ||| | |||||||||||||||||||| |
|
|
| T |
33304019 |
atatttttgagggtgaagattttagtttggaggtgaagagttgcgggtatcggtgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaa |
33303920 |
T |
|
| Q |
462 |
tca |
464 |
Q |
| |
|
||| |
|
|
| T |
33303919 |
tca |
33303917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 33304357 - 33304196
Alignment:
| Q |
12 |
ctttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctatt |
111 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||| ||||||||||| ||||||||||||| | || |||||||||||||||||||||||| |||||||||| |
|
|
| T |
33304357 |
ctttgattggattcaaattgttactccaggaaatgaaataccaatttggatcaacaataagagcgtgggtgattcaatacaaatagaccgatctcctatt |
33304258 |
T |
|
| Q |
112 |
atgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
173 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||| |||||||||| |||||| |||||||||| |
|
|
| T |
33304257 |
atgcatgacaataacaattatatcattggctttctatgttgtgcggtattttccatggcacc |
33304196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 33388031 - 33387870
Alignment:
| Q |
8 |
cctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcc |
107 |
Q |
| |
|
|||| ||||||| || ||||||||| ||| |||||||||||||||| ||||||||||||||||| || ||||||||||||||| ||||||| ||| || |
|
|
| T |
33388031 |
cctattttgatacgattcaaattgttactacaggaagtgaaataccgagttggatcaacaatcagagcatgggtgattcaatactaatagacaaattgcc |
33387932 |
T |
|
| Q |
108 |
tattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatgg |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||| |
|
|
| T |
33387931 |
tattatgcatgacaataacaataatatcattggctttctatgttgtgcagtatttacaatgg |
33387870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 28870320 - 28870446
Alignment:
| Q |
28 |
attgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataaca |
127 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||| || |||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28870320 |
attgttactccaggaagtgaaataccaagttggattaacaatcagagcatgggtggttcaatacaaatagacgaatctcctattataaatgacaataaca |
28870419 |
T |
|
| Q |
128 |
ataatatcattggatttgtatgttgtg |
154 |
Q |
| |
|
||||||||||||| ||||||||||||| |
|
|
| T |
28870420 |
ataatatcattggctttgtatgttgtg |
28870446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 28 - 173
Target Start/End: Complemental strand, 33285451 - 33285306
Alignment:
| Q |
28 |
attgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataaca |
127 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || ||||| || |||||| |||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
33285451 |
attgttactccaggaagtgaaataccaagttggattaataatcagagcgtgggtagttcaataccaatagacagatctcctattatgcatgacaataaca |
33285352 |
T |
|
| Q |
128 |
ataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
173 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||| || ||||||| |
|
|
| T |
33285351 |
ataatatcattggctttgtatgttgtgcagtgttttccgtggcacc |
33285306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 33057427 - 33057290
Alignment:
| Q |
36 |
tccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatc |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||| ||||||||||| |||||||||| ||||||||||| |
|
|
| T |
33057427 |
tccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaatagcaatagaccgatctcctattaggcatgacaatgacaataatatc |
33057328 |
T |
|
| Q |
136 |
attggatttgtatgttgtgcagtatttaccatggcacc |
173 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
33057327 |
attggtattgtatgttgtgcagcatttacgatggcacc |
33057290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 33262487 - 33262338
Alignment:
| Q |
24 |
tcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaat |
123 |
Q |
| |
|
||||||||| | |||||||| ||||||||||||||||||||||||||| || ||||||||||||||| | ||||| || |||||||||||||||| ||| |
|
|
| T |
33262487 |
tcaaattgttagtccaggaaatgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgcatgataat |
33262388 |
T |
|
| Q |
124 |
aacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
173 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| |||||| ||||| |||| |
|
|
| T |
33262387 |
aacaataatatcattggctttctatgttgtgttgtattttccatgacacc |
33262338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 33409839 - 33409690
Alignment:
| Q |
24 |
tcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaat |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||| ||| || ||||||||| |||| |||||||| |
|
|
| T |
33409839 |
tcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcagagcgtgggtgcttcaatatcaattgatgaatctcctgttataaatgacaat |
33409740 |
T |
|
| Q |
124 |
aacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
173 |
Q |
| |
|
||||||||||| ||||| |||||| |||||| | || || |||||||||| |
|
|
| T |
33409739 |
aacaataatattattggctttgtaagttgtgtattaatttccatggcacc |
33409690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 278 - 493
Target Start/End: Complemental strand, 33271447 - 33271233
Alignment:
| Q |
278 |
gtcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaaaaatccattttgacatttttgaggggga |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| | ||||||||| |||||| || |||||| ||| ||| || | || | | ||| || |
|
|
| T |
33271447 |
gtcttattacgaccaaatcaagtcacctatggatgatcttcctccctcgagggtcctatgataaatttgaaaacatctgttgttacgatgtgttgggtga |
33271348 |
T |
|
| Q |
378 |
aggtttgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatcctt |
477 |
Q |
| |
|
||| ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| ||||||| |||||||| |||||||| ||||| ||||| |
|
|
| T |
33271347 |
aggcttgggtatggaggtgaagagttgcgggtatcgttggatatgtaaacaagacctacaagagttcaatataacaatgctgaatcacgaaaat-tcctt |
33271249 |
T |
|
| Q |
478 |
agctccgaagtgtaag |
493 |
Q |
| |
|
||||| || |||||| |
|
|
| T |
33271248 |
ggctccaaaatgtaag |
33271233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 33398934 - 33398788
Alignment:
| Q |
23 |
ctcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaa |
122 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||| || |
|
|
| T |
33398934 |
ctcaaattgttattccaggaagtgaaataccaagttggatcaacaatcagtgtgtgggtgattcaatacaaatagacctatctcctgctatgcatgataa |
33398835 |
T |
|
| Q |
123 |
taacaataatatcattggatttgtatgttgtgcagtatttaccatgg |
169 |
Q |
| |
|
||||||| | | | | |||||||||||||||||||||||||||| |
|
|
| T |
33398834 |
taacaatcagagccattactttgtatgttgtgcagtatttaccatgg |
33398788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 102 - 322
Target Start/End: Complemental strand, 33358716 - 33358496
Alignment:
| Q |
102 |
atctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccacgtcgtaggcgggttccatcgtcgacc |
201 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| |||| | | | || ||||| ||| | || |
|
|
| T |
33358716 |
atctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttccatgacacctcagcatgggtattttccaccgtggtcc |
33358617 |
T |
|
| Q |
202 |
attatggaactagttttacctaagaattcctatatgaatttttggaaaataagtgttccagtaattctcgatggtggtcttattacgaccaaatcaagtc |
301 |
Q |
| |
|
|||||||||| |||| ||| ||||| ||| | ||| ||||||| |||||||||||||||||| |||| |||||||||||| |||||||||||| |
|
|
| T |
33358616 |
cttatggaactgactttaactacagattccaatagtattttgaggaaaatgagtgttccagtaattctcaatggaggtcttattacgcccaaatcaagtc |
33358517 |
T |
|
| Q |
302 |
acctatggataatctacttcc |
322 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
33358516 |
acctgtggataatctacttcc |
33358496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 385 - 526
Target Start/End: Complemental strand, 33262117 - 33261975
Alignment:
| Q |
385 |
ggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccg |
484 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| ||| || |
|
|
| T |
33262117 |
ggtatggaggtgaagagttgcgggtatcattgggtatgtaaacaagacctacaagagttcaacttaacaatgatgaatcatgaaaa-atccttggcttcg |
33262019 |
T |
|
| Q |
485 |
aagtgtaaggtttgggta--tgaagatgaggcagaaccacaacc |
526 |
Q |
| |
|
|| |||||| ||| || | |||||||||| || |||||||||| |
|
|
| T |
33262018 |
aaatgtaagattttggcaattgaagatgagacacaaccacaacc |
33261975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 262 - 488
Target Start/End: Original strand, 28870548 - 28870772
Alignment:
| Q |
262 |
gtaattctcgatggtggtcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaaaaatccattttg |
361 |
Q |
| |
|
|||||| ||||| | | |||||||||||||||||||||||||||||| || |||||||||| ||||| | |||| ||| | ||||| |||| | | |
|
|
| T |
28870548 |
gtaattatcgatagagatcttattacgaccaaatcaagtcacctatgactagtctacttcccccgagagtactatgatgtttatggaactatccgtgtga |
28870647 |
T |
|
| Q |
362 |
acatttttgagggggaaggtttgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaa |
461 |
Q |
| |
|
| || | ||| |||| | ||||| | ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28870648 |
aaggttatatgggtgaagttgtgggttttgaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagagttcaacttaacaatgatgaa |
28870747 |
T |
|
| Q |
462 |
tcacaaaaatatccttagctccgaagt |
488 |
Q |
| |
|
||||||||| ||||| |||| ||||| |
|
|
| T |
28870748 |
-cacaaaaat-tccttggctcagaagt |
28870772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 36 - 162
Target Start/End: Original strand, 31562983 - 31563109
Alignment:
| Q |
36 |
tccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatc |
135 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||| || ||||||||||||||| |||||| |||||| |||||||||||||| |||| ||||| |
|
|
| T |
31562983 |
tccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgatatc |
31563082 |
T |
|
| Q |
136 |
attggatttgtatgttgtgcagtattt |
162 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
31563083 |
attggctttgtatgttgtgcagtattt |
31563109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 383 - 489
Target Start/End: Complemental strand, 33407882 - 33407777
Alignment:
| Q |
383 |
tgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctc |
482 |
Q |
| |
|
|||||| |||||||||||| || |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||| |
|
|
| T |
33407882 |
tgggtacgaaggtgaagagctgcgggtatagttgggtatgtaaacaagacctacaaaagttcaacttaacaatgatgaatcacgaaaat-tccttggctc |
33407784 |
T |
|
| Q |
483 |
cgaagtg |
489 |
Q |
| |
|
|||||| |
|
|
| T |
33407783 |
agaagtg |
33407777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 286 - 443
Target Start/End: Original strand, 31563224 - 31563381
Alignment:
| Q |
286 |
acgaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaaaaatccattttgacatttttgagggggaaggtttgg |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || | |||||||| ||||||||||||||||||||||| || || || |
|
|
| T |
31563224 |
acgaccaaatcaagtcacctatggataatctacttccctcgagggtcacgtcatgaatttcgaaaaatccattttgacattttttcggctaaaatttcac |
31563323 |
T |
|
| Q |
386 |
gtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagtt |
443 |
Q |
| |
|
||||| |||||||||||| || |||||||||||||||||||| ||||||||| |||| |
|
|
| T |
31563324 |
ctatgagggtgaagagttgcggatatcgttgggtatgtaaacatgacctacaagagtt |
31563381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 279 - 493
Target Start/End: Complemental strand, 33409590 - 33409377
Alignment:
| Q |
279 |
tcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaaaaatccattttgacatttt-tgaggggga |
377 |
Q |
| |
|
||||||||| ||||||||||||||||||||| || |||||||||| ||||| |||||| ||| | ||||| ||| | || || || | |||| || |
|
|
| T |
33409590 |
tcttattacaaccaaatcaagtcacctatggctagtctacttcccccgagagtcctatgatgtttatggaactctccgtgc-gaaatgttatcagggtga |
33409492 |
T |
|
| Q |
378 |
aggtttgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatcctt |
477 |
Q |
| |
|
|| | ||||| | ||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
33409491 |
agttgtgggttttgaggtgaaaagttgcgggtatcgttgggtatgtaaacaagacctacaaaagttcaacttcacaatgatgaatcatgaaaat-tcctt |
33409393 |
T |
|
| Q |
478 |
agctccgaagtgtaag |
493 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
33409392 |
ggctcagaagtgtaag |
33409377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 383 - 464
Target Start/End: Complemental strand, 33396932 - 33396851
Alignment:
| Q |
383 |
tgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatca |
464 |
Q |
| |
|
|||||||| |||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33396932 |
tgggtatggaggtgaagagctgcaggtatagttgggtatgtaaacaagacctacaaaagttcaacttaacaatgatgaatca |
33396851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 33398581 - 33398465
Alignment:
| Q |
376 |
gaaggtttgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatcc |
475 |
Q |
| |
|
|||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||||| ||||| ||| |
|
|
| T |
33398581 |
gaaggtttgggttttgaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacgaaagttgaacttcacaatgatgaatcatgaaaat-tcc |
33398483 |
T |
|
| Q |
476 |
ttagctccgaagtgtaag |
493 |
Q |
| |
|
|| |||| ||||||||| |
|
|
| T |
33398482 |
tttgctcaaaagtgtaag |
33398465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 392 - 471
Target Start/End: Complemental strand, 33358423 - 33358345
Alignment:
| Q |
392 |
aggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaat |
471 |
Q |
| |
|
||||||||||||||| |||||||||||| | |||||||||||||||| |||||||||| ||||||||||||||| ||||| |
|
|
| T |
33358423 |
aggtgaagagttgtgagtatcgttgggttt-taaacaagacctacaagagttcaacttcacaatgatgaatcacgaaaat |
33358345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 33271648 - 33271582
Alignment:
| Q |
32 |
taactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaataga |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||| |||| |||||| |
|
|
| T |
33271648 |
taactccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcgataccaataga |
33271582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 278 - 554
Target Start/End: Complemental strand, 33057188 - 33056908
Alignment:
| Q |
278 |
gtcttattacgaccaaatcaagtcacctatggataatctacttccctcgag------------attcctataatgaatttggaaaaatccattttgacat |
365 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||| || |||| |||||| | |||||||||||||||| | || | | |
|
|
| T |
33057188 |
gtcttgttacgaccaaatcaagtcacctatggattatctacttaccccgagagtaccccgggtattcctgtcatgaatttggaaaaatagaattaaaatt |
33057089 |
T |
|
| Q |
366 |
ttttgagggggaaggtttgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcac |
465 |
Q |
| |
|
|||||||| ||||||||||| |||| ||||||| || ||||||||||||||||||||||| ||||| | ||||| || ||| ||||||||| |
|
|
| T |
33057088 |
ttttgaggtggaaggtttgg------aggtcgagagttgcggttatcgttgggtatgtaaacaagatatacaagaattcaattt---aatcatgaatcac |
33056998 |
T |
|
| Q |
466 |
aaaaatatccttagctccgaagtgtaaggtttgggta--tgaagatgaggcagaaccacaaccgcagccataaccacttcacagataagaa |
554 |
Q |
| |
|
|||||| |||||| |||| ||||| || ||| | | |||||||||| || ||||| ||||||| ||||||| |||||||||||||||| |
|
|
| T |
33056997 |
aaaaat-tccttaactccaaagtgcaaaattttgacaattgaagatgagacacaaccagaaccgcaaccataactacttcacagataagaa |
33056908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 383 - 464
Target Start/End: Complemental strand, 33281234 - 33281153
Alignment:
| Q |
383 |
tgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatca |
464 |
Q |
| |
|
|||||| | ||||||||||||| | | ||||||| |||||||||||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
33281234 |
tgggtacggaggtgaagagttgcgtgcatcgttgaatatgtaaacaagacctacaagagttcagtttaacaataatgaatca |
33281153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 640 - 682
Target Start/End: Complemental strand, 33056900 - 33056858
Alignment:
| Q |
640 |
aacatattttcatgggtatatgttctgcttcataccatgaagt |
682 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
33056900 |
aacatattttcatgggtgtatgttctgtttcataccatgaagt |
33056858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 772 - 826
Target Start/End: Original strand, 33648495 - 33648549
Alignment:
| Q |
772 |
gtatgatttggtcatttactaaaaagtgacatttccataattcctcaaattccta |
826 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| | ||||||| ||||||| |
|
|
| T |
33648495 |
gtatgatttggtcatgtaccaaaaagtgacatttccacacttcctcagattccta |
33648549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 33398708 - 33398651
Alignment:
| Q |
279 |
tcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctat |
336 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| |||| |||| |||||||||||| |
|
|
| T |
33398708 |
tcttgttacgaccgaatcaagtcacctatggatagcctacatcccccgagattcctat |
33398651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 33262232 - 33262175
Alignment:
| Q |
279 |
tcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctat |
336 |
Q |
| |
|
||||||||||| |||||||||||||| ||| |||||||||| || ||||| |||||| |
|
|
| T |
33262232 |
tcttattacgatgaaatcaagtcacctgtggctaatctacttaccccgagagtcctat |
33262175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 5e-55; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 289 - 470
Target Start/End: Original strand, 17441301 - 17441482
Alignment:
| Q |
289 |
accaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaaaaatccattttgacatttttgagggggaaggtttgggta |
388 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| | || |||||| ||| |||| || |||||| |||||| |||||||||||| ||| |||||||| |
|
|
| T |
17441301 |
accaaatcaagtcacatatggataatctacttccactgtgagtcctatcatgcatttcgagaaatccgttttgaaatttttgaggggcaagctttgggta |
17441400 |
T |
|
| Q |
389 |
tgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaa |
470 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
17441401 |
tggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagagttcaacttaacaatgatgaatcacgaaaa |
17441482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 17441008 - 17441203
Alignment:
| Q |
17 |
ataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgca |
116 |
Q |
| |
|
|||||| ||| ||||| | ||||||||| |||||||||||||||||||||||| | || ||||||||||||||| ||||||| |||||||||||| ||| |
|
|
| T |
17441008 |
ataggattcatattgttagtccaggaagcgaaataccaagttggatcaacaataagagcgtgggtgattcaataagaatagaccaatctcctattaagca |
17441107 |
T |
|
| Q |
117 |
tgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccacgtcgtaggcgggttccatcgtcgaccattatggaactagtt |
216 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||||||| |||||||||| | |||| || || ||||||||||| || ||||||||| ||| |
|
|
| T |
17441108 |
tg------acaataatatcattggttttgtatgttgtgcagtattttccatggcacctcatcgtgggaggtttccatcgtcggcccatatggaactggtt |
17441201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 415 - 489
Target Start/End: Original strand, 17446954 - 17447027
Alignment:
| Q |
415 |
tgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtg |
489 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||| ||||| |||| |||||| |
|
|
| T |
17446954 |
tgggtatgtaaacaagacctacaagagttcaacttaacaatgttgaataacgaaaat-tccttggctcagaagtg |
17447027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 94; Significance: 2e-45; HSPs: 3)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 505 - 356
Alignment:
| Q |
24 |
tcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaat |
123 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||| |||||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
505 |
tcaaattgttactccaggaagtgaaataccaagctggatcaacaatcagagcatgggtggttcaatactaatagacgaatctcctgttatacatgacaat |
406 |
T |
|
| Q |
124 |
aacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
173 |
Q |
| |
|
|| |||||||||||||| ||||||| ||||||||||||| ||||||||| |
|
|
| T |
405 |
aagaataatatcattggctttgtattttgtgcagtattttgcatggcacc |
356 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 383 - 526
Target Start/End: Complemental strand, 146 - 2
Alignment:
| Q |
383 |
tgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctc |
482 |
Q |
| |
|
|||||||| | |||||| |||| |||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |||| |||||| ||| |
|
|
| T |
146 |
tgggtatggatgtgaagtgttgcgggtatcgttgggtatgtaaacaaaacttacaagagttcaacttaacaatgatgaatcatgaaaa-atccttggctt |
48 |
T |
|
| Q |
483 |
cgaagtgtaaggtttgggta--tgaagatgaggcagaaccacaacc |
526 |
Q |
| |
|
|||| |||||| ||| || | |||||||||| || |||||||||| |
|
|
| T |
47 |
cgaaatgtaagattttggcaattgaagatgagacacaaccacaacc |
2 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 256 - 186
Alignment:
| Q |
279 |
tcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaa |
349 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||||||| || ||||| | |||| ||| ||||||| |
|
|
| T |
256 |
tcttattccgaccaaatcaagtcacctatggctagtctactttccccgagagtactatgatgtttttggaa |
186 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 94; Significance: 2e-45; HSPs: 4)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 6251 - 6102
Alignment:
| Q |
24 |
tcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaat |
123 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||| |||||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
6251 |
tcaaattgttactccaggaagtgaaataccaagctggatcaacaatcagagcatgggtggttcaatactaatagacgaatctcctgttatacatgacaat |
6152 |
T |
|
| Q |
124 |
aacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
173 |
Q |
| |
|
|| |||||||||||||| ||||||| ||||||||||||| ||||||||| |
|
|
| T |
6151 |
aagaataatatcattggctttgtattttgtgcagtattttgcatggcacc |
6102 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 383 - 526
Target Start/End: Complemental strand, 5892 - 5748
Alignment:
| Q |
383 |
tgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctc |
482 |
Q |
| |
|
|||||||| | |||||| |||| |||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |||| |||||| ||| |
|
|
| T |
5892 |
tgggtatggatgtgaagtgttgcgggtatcgttgggtatgtaaacaaaacttacaagagttcaacttaacaatgatgaatcatgaaaa-atccttggctt |
5794 |
T |
|
| Q |
483 |
cgaagtgtaaggtttgggta--tgaagatgaggcagaaccacaacc |
526 |
Q |
| |
|
|||| |||||| ||| || | |||||||||| || |||||||||| |
|
|
| T |
5793 |
cgaaatgtaagattttggcaattgaagatgagacacaaccacaacc |
5748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 383 - 464
Target Start/End: Original strand, 13018 - 13099
Alignment:
| Q |
383 |
tgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatca |
464 |
Q |
| |
|
|||||| | ||||||||||||| | | ||||||| |||||||||||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
13018 |
tgggtacggaggtgaagagttgcgtgcatcgttgaatatgtaaacaagacctacaagagttcagtttaacaataatgaatca |
13099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 6002 - 5932
Alignment:
| Q |
279 |
tcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaa |
349 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||||||| || ||||| | |||| ||| ||||||| |
|
|
| T |
6002 |
tcttattccgaccaaatcaagtcacctatggctagtctactttccccgagagtactatgatgtttttggaa |
5932 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 7e-36; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 28 - 173
Target Start/End: Original strand, 31499206 - 31499351
Alignment:
| Q |
28 |
attgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataaca |
127 |
Q |
| |
|
||||| |||||||||||||||||| |||||||| | || ||||| || |||||||||||||| ||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
31499206 |
attgttactccaggaagtgaaatatcaagttggtttaagaatcagagcaagggtgattcaatacgaatagactcatctcccattatccatgacaataaca |
31499305 |
T |
|
| Q |
128 |
ataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
173 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| | |||||||| |
|
|
| T |
31499306 |
ataatatcattggctttgtatgttgtgcagtattttctatggcacc |
31499351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 31472701 - 31472835
Alignment:
| Q |
28 |
attgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataaca |
127 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||| | ||||||||| |||| | ||||| |||||| ||||||||||||||||||| |
|
|
| T |
31472701 |
attgttactccaggaagtgaaataccaagttggttcaacaatcagaacaagggtgattcgatacgattagactcatctcccattatgcatgacaataaca |
31472800 |
T |
|
| Q |
128 |
ataatatcattggatttgtatgttgtgcagtattt |
162 |
Q |
| |
|
||||||||||||| | | ||||||||| ||||||| |
|
|
| T |
31472801 |
ataatatcattggttgtatatgttgtgtagtattt |
31472835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 31479146 - 31479293
Alignment:
| Q |
15 |
tgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatg |
114 |
Q |
| |
|
||||||| ||||||||| |||||||| |||||||| ||||||||| |||||||||| || |||| ||| ||||| |||||| ||||| |||||| |
|
|
| T |
31479146 |
tgatagggttcaaattgttactccaggtagtgaaatgccaagttggttcaacaatcagagcaagggtaatttaatacgaatagattcttctccgattatg |
31479245 |
T |
|
| Q |
115 |
catgacaataacaataatatcattggatttgtatgttgtgcagtattt |
162 |
Q |
| |
|
|| |||||||||||||||||| |||| | ||||||||||| ||||||| |
|
|
| T |
31479246 |
cacgacaataacaataatatcgttggctgtgtatgttgtgtagtattt |
31479293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 394 - 471
Target Start/End: Original strand, 31479558 - 31479635
Alignment:
| Q |
394 |
gtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaat |
471 |
Q |
| |
|
||||||| ||||||||| |||||||| | |||||| || |||||| | ||||||||||||| ||||||||||| |||| |
|
|
| T |
31479558 |
gtgaagaattgtgggtaccgttgggtttataaacaggatctacaagaattcaacttaacaaagatgaatcacagaaat |
31479635 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 31148158 - 31148111
Alignment:
| Q |
24 |
tcaaattgtaactccaggaagtgaaataccaagttggatcaacaatca |
71 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
31148158 |
tcaaattgttactccgggaagtgaaataccaagttggttcaacaatca |
31148111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 161
Target Start/End: Complemental strand, 31157082 - 31156947
Alignment:
| Q |
26 |
aaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataa |
125 |
Q |
| |
|
||||||| | ||| |||||||||||||||| |||| |||||||||| || | ||||||||||||| ||| ||| ||||| |||||| | ||||| | |
|
|
| T |
31157082 |
aaattgttattcctggaagtgaaataccaatttggttcaacaatcagagcgagggtgattcaataagaatggacctatctcagattatggacaacaatga |
31156983 |
T |
|
| Q |
126 |
caataatatcattggatttgtatgttgtgcagtatt |
161 |
Q |
| |
|
|||| || ||||||| ||| |||||||||||||| |
|
|
| T |
31156982 |
caatgatttcattggcattgcttgttgtgcagtatt |
31156947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 31504420 - 31504490
Alignment:
| Q |
110 |
ttatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccacgtcgt |
180 |
Q |
| |
|
||||||||||| ||| |||||||||||||| | ||||||||||| ||||||| |||||| ||| |||||| |
|
|
| T |
31504420 |
ttatgcatgactttaaaaataatatcattggttgtgtatgttgtgtagtattttccatggaacctcgtcgt |
31504490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 376 - 471
Target Start/End: Original strand, 31473099 - 31473195
Alignment:
| Q |
376 |
gaaggtttgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaa-cttaacaatgatgaatcacaaaaat |
471 |
Q |
| |
|
|||| ||||||||| ||||||||| ||||||||| | |||||||| | || | || |||||| ||| ||| |||||||| |||||||||||||||| |
|
|
| T |
31473099 |
gaagatttgggtatagaggtgaagaattgtgggtaccattgggtatatgaagaggatctacaagagtccaaacttaacaaagatgaatcacaaaaat |
31473195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 392 - 459
Target Start/End: Complemental strand, 31525858 - 31525791
Alignment:
| Q |
392 |
aggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatg |
459 |
Q |
| |
|
||||||||| |||||| ||||||||||||| |||||| || |||||| | ||||||| ||||||||| |
|
|
| T |
31525858 |
aggtgaagaattgtggttatcgttgggtatataaacatgatctacaacatctcaactttacaatgatg |
31525791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 415 - 481
Target Start/End: Original strand, 31499587 - 31499652
Alignment:
| Q |
415 |
tgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagct |
481 |
Q |
| |
|
||||||| ||| || || |||||| |||| |||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
31499587 |
tgggtatataagcatgatctacaagagttgaacttaacaatgatgaatcacagaaata-ccttagct |
31499652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 451
Target Start/End: Original strand, 31485298 - 31485355
Alignment:
| Q |
394 |
gtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaa |
451 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| || || || ||| |||||||||||| |
|
|
| T |
31485298 |
gtgaagagttgcgggtatcgttgggtatttaagcaggatctgcaagagttcaacttaa |
31485355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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