View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4739-Insertion-5 (Length: 325)
Name: NF4739-Insertion-5
Description: NF4739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4739-Insertion-5 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 281
Target Start/End: Original strand, 35327793 - 35328068
Alignment:
| Q |
10 |
aaccatgaaccaaatctttttaatagttaaacctagttcttataaacccatat----atattgaaatgaaaagatagaaagaatcaagagactgagtgtt |
105 |
Q |
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| T |
35327793 |
aaccatgaaccaaatctttttgatagttaaatctagttcttataaacccatatatatatattgaaatgaaaagatagaaagaatcaagaaactgagtgtt |
35327892 |
T |
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| Q |
106 |
aaactggaaacttaacgaagaaaatgaagaatttctcctcaagggcttttcactttgcagataatttcttatttcaccaccaactatccaatgtacagaa |
205 |
Q |
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| T |
35327893 |
aaactggaaacttaacgaagaaaatgaagaatttctcctcaagggcttttcactttgcagataatttcttatttcaccacctactatccaatgtacagaa |
35327992 |
T |
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| Q |
206 |
tgaccttccacaaccgcacataccctatttatctatccaaccaaatcccctttgattaaccaactgtcctatttga |
281 |
Q |
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| T |
35327993 |
tgaccttccacaaccgcacataccctatttatctatctaaccaaatcccctttgattaaccaactgtcctatttga |
35328068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 35328253 - 35328305
Alignment:
| Q |
273 |
cctatttgaccataaatattcttcccttgttctttatccacaatatcgccccc |
325 |
Q |
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| T |
35328253 |
cctatttgaccataaatattcttcccttgttctttgtccacaatatcgccccc |
35328305 |
T |
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