View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4739_high_5 (Length: 251)
Name: NF4739_high_5
Description: NF4739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4739_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 2564359 - 2564119
Alignment:
| Q |
1 |
tatataattgtctaaacatgtgttcaaaaatttgtgtgctaannnnnnnnatagggcacaaaagtgccatattttatatgacaacgnnnnnnnnnnnntc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | || |
|
|
| T |
2564359 |
tatataattgtctaaacatgtgttcaaaaatttgtgtgctaattttttttatagggcacaaaagtgccatattttatatgacaatgaaaaaataaaaatc |
2564260 |
T |
|
| Q |
101 |
gataattttagaaacggaaaacatatcctcaaattaattttcacatagaacaaagtgaataataataataatcataccttaggtcgatcacaagttgggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2564259 |
gataattttagaaacggaaaacatatcctcaaattaattttcacatagaacaaagtgaatgataataataatcataccttaggtcgatcacaagttgggc |
2564160 |
T |
|
| Q |
201 |
attgccaccaagtacgaccacctccatgaaaacctcctttg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2564159 |
attgccaccaagtacgaccacctccatgaaaacctcctttg |
2564119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 2554590 - 2554484
Alignment:
| Q |
129 |
tcaaattaattttcacatagaacaaagtgaataataataataatcataccttaggtcgatcacaagttgggcattgccaccaagtacgaccacctccatg |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2554590 |
tcaaattaattttcacatagaacaaagtgaataataaa------cataccacgggtcgatcacaagttgggcattgccaccaagtaggaccacctccatg |
2554497 |
T |
|
| Q |
229 |
aaaacctcctttg |
241 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2554496 |
aaaacctcctttg |
2554484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University