View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4739_high_7 (Length: 246)
Name: NF4739_high_7
Description: NF4739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4739_high_7 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 246
Target Start/End: Complemental strand, 2564667 - 2564443
Alignment:
| Q |
22 |
gtcgccataaaataagtgccaactttgcgtactgataaaatttctaggcacgcatttttaatttgtgttgttaagttagcaaacannnnnnnacataaaa |
121 |
Q |
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| T |
2564667 |
gtcgccataaaataaatgccaactttgcgtacttataaaatttctacgcacgcatttttagtttgtgttgttaagttagcaaacatttttttacataaaa |
2564568 |
T |
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| Q |
122 |
gaagaagaagaaaacaatgcatttttgaatattctttttacaaacatgttagaacattataaaaagtttatcgacnnnnnnntgagcttacaatttgact |
221 |
Q |
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| T |
2564567 |
gaagaagaagaaaacaatgcatttttgaatattttttttacaaacatgttagaacattataacaagttcatcgacaaaaaaatgagcttaccatttgact |
2564468 |
T |
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| Q |
222 |
tctatgtctagattttattactttt |
246 |
Q |
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| T |
2564467 |
tctatgtctagattttattactttt |
2564443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 2555017 - 2554791
Alignment:
| Q |
21 |
cgtcgccataaaataagtgccaactttgcgtactgataaaatttctaggcacgcatttttaatttgtgttgttaagttagcaaacannnnnnnacataaa |
120 |
Q |
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|||||||||||||||||||||| ||| || ||| |||||||||||| ||||||||||||| |||||||||||||| | |||||| |||||| |
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| T |
2555017 |
cgtcgccataaaataagtgccacttttacgcacttataaaatttctacgcacgcatttttagtttgtgttgttaagacaacaaacattttttc-cataaa |
2554919 |
T |
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| Q |
121 |
agaagaagaagaaaacaatgcatttttgaat-attctttttacaaa-catgttagaacattataaaaagtttatcgacnnnnnnntgagcttacaatttg |
218 |
Q |
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| T |
2554918 |
agaagaagaagaaaacaatatatattttaattattttttttacaaaacatgttagaacattataaaaagttcatccacaaaaaaatgagcttacaatttt |
2554819 |
T |
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| Q |
219 |
acttctatgtctagattttattactttt |
246 |
Q |
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| T |
2554818 |
acttctgtgtctagattttattactttt |
2554791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 189
Target Start/End: Original strand, 33745464 - 33745500
Alignment:
| Q |
154 |
tctttttacaaacatgtt-agaacattataaaaagtt |
189 |
Q |
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| T |
33745464 |
tctttttacaaacatgtttagaacattataaaaagtt |
33745500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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