View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4739_high_8 (Length: 241)
Name: NF4739_high_8
Description: NF4739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4739_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 44662618 - 44662839
Alignment:
| Q |
1 |
ttatagtctgagcatagtgagcaattactgcatccaaattggcatctgtttcacctatggacttcgtgacatcaaggtttgtaagtccaataatgttctc |
100 |
Q |
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| T |
44662618 |
ttatagtctgagcatagtgagcaattattgcatccaaattggcatctgtttcacctatggacttcgtgacatcaaggtttgtaagtccaataatgttctc |
44662717 |
T |
|
| Q |
101 |
ttcatcatgtttctcttctcttgagagcttggcattgactacaaccgttggcaacaattctgcatcaggaatgaacgtcattgccatgttgtttccttct |
200 |
Q |
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| T |
44662718 |
ttcatcatgtttctcttctcttgagagtttggcattgactacaaccgttggcaacaattctgcatcaggaatgaaagtcattgccatgttgtttccttct |
44662817 |
T |
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| Q |
201 |
tgactctccattatatccctgt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
44662818 |
tgactctccattatatccctgt |
44662839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 44685032 - 44685083
Alignment:
| Q |
1 |
ttatagtctgagcatagtgagcaattactgcatccaaattggcatctgtttc |
52 |
Q |
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||||||||| |||||| ||||||||| ||||||||||||||||||| |||| |
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| T |
44685032 |
ttatagtctccgcatagcgagcaattattgcatccaaattggcatctttttc |
44685083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 29339675 - 29339457
Alignment:
| Q |
13 |
catagtgagcaattactgcatccaaattggcatctgtttcacctatggacttcgtgacatcaaggtttgtaagtccaataatgttctcttcat------- |
105 |
Q |
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| T |
29339675 |
catagtgagtaattactgcatctaaattggcatcagtttcaccaatgcattgtgtgatagcaatgttggtaagtctattaatgtcctcttcatgaatatt |
29339576 |
T |
|
| Q |
106 |
--catgtttctcttctcttgagagcttggcattgactacaaccgttggcaacaattctgcatcaggaatgaacgtcattgccatgttgtttccttcttga |
203 |
Q |
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||||| ||||||||| |||||| ||||||||| | ||||| |||||||||| |||||||||||||||| | ||||| ||||||| |||||||| |
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| T |
29339575 |
tgcatgtctctcttctcctgagagtttggcattgccaacaactgttggcaacatctctgcatcaggaatgatagccattgtcatgttgcttccttctaag |
29339476 |
T |
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| Q |
204 |
ctctccattatatccctgt |
222 |
Q |
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||||||||||||||||||| |
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| T |
29339475 |
ctctccattatatccctgt |
29339457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 29352837 - 29352619
Alignment:
| Q |
13 |
catagtgagcaattactgcatccaaattggcatctgtttcacctatggacttcgtgacatcaaggtttgtaagtccaataatgttctcttcat------- |
105 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||| ||| | | |||| | ||| ||| ||||||| | |||||| |||||||| |
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| T |
29352837 |
catagtgagcaattactgcatctaaattggcatcagtttcaccaatgcattgtgtgatagcaatgttggtaagtctattaatgtcctcttcatgaatatt |
29352738 |
T |
|
| Q |
106 |
--catgtttctcttctcttgagagcttggcattgactacaaccgttggcaacaattctgcatcaggaatgaacgtcattgccatgttgtttccttcttga |
203 |
Q |
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||||| |||||||| |||||| |||||| || | ||||| |||||||||| |||||||||||||||| | ||||| ||||||| |||||||| |
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| T |
29352737 |
tgcatgtctctcttcttctgagagtttggcaatgccaacaactgttggcaacatctctgcatcaggaatgatagccattgtcatgttgcttccttctaag |
29352638 |
T |
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| Q |
204 |
ctctccattatatccctgt |
222 |
Q |
| |
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||||||| | ||||||||| |
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| T |
29352637 |
ctctccactgtatccctgt |
29352619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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