View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4739_low_1 (Length: 509)
Name: NF4739_low_1
Description: NF4739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4739_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 10 - 494
Target Start/End: Complemental strand, 12268889 - 12268412
Alignment:
| Q |
10 |
acatcatcacaacgcattgttttacttgactaactaccataactcttctagctatttatcttttctgaatctggactaaaattctccagtttgtgatgtt |
109 |
Q |
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| T |
12268889 |
acatcatcacaacgcattgttttacttgactaactaccataactcttctagctatttatcttttctgaatctggactaaaattctccagtttgtgatgtt |
12268790 |
T |
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| Q |
110 |
ttagattttgcagatgactcacccaaaaagatatttgcattagacctttatttttt-atagcaaacgattctataaaataatttataatttattagtaat |
208 |
Q |
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| T |
12268789 |
ttagattttgcagatgactcacccaaaaagatatttgcattagacctttatttttttatagcaaacgattctataaaataatttataatttattagtaat |
12268690 |
T |
|
| Q |
209 |
aaatgaaaatattgatatggggggatgggtagccactactgcatttgtgacttttagtaacactcactcactcaccttgtaacatttgttaaattgttac |
308 |
Q |
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| T |
12268689 |
aaatgaaaatattgatatggg--------tagccactactgcatttgtgacttttagtaacactcactcactcaccttgtaacatttgttaaattgttac |
12268598 |
T |
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| Q |
309 |
tgctatggtgattttgtaacatttccaaaatgtgtttcatactttgtaagttgtaacaatctttttgttattagtgctttataattttccttttaaatta |
408 |
Q |
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| T |
12268597 |
tgatatggtgattttgtaacatttccaaaatgtgtttcatactttgtacgttgtaacaatctttttgttattagtgctttataattttccttttaaatta |
12268498 |
T |
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| Q |
409 |
catttcaattttctaactctttaaatttctctcacttccaccttcttctcctcactcaattgtgatcgaaacccagaagcaaaaat |
494 |
Q |
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| T |
12268497 |
catttcaattttctaactctttaaatttctctcacttccaccttcttcttctcactcgattgtgatcgaaccccagaagcaaaaat |
12268412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 166 - 279
Target Start/End: Complemental strand, 12270276 - 12270163
Alignment:
| Q |
166 |
atagcaaacgattctataaaataatttataatttattagtaataaatgaaaatattgatatggggggatgggtagccactactgcatttgtgacttttag |
265 |
Q |
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||||| ||||||||| |||| |||||||||||||||| |||||||||||||||| |||||||| ||| ||||||||||||| ||||| |||||||| | |
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| T |
12270276 |
atagccaacgattctttaaagtaatttataatttattgcaaataaatgaaaatatttatatggggtgattggtagccactactacatttatgactttttg |
12270177 |
T |
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| Q |
266 |
taacactcactcac |
279 |
Q |
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| T |
12270176 |
taacacttactcac |
12270163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 439
Target Start/End: Complemental strand, 17032100 - 17032022
Alignment:
| Q |
359 |
ttgtaacaatctttttgttattagtgctttataattttccttttaaattacatttcaattttctaactctttaaatttctc |
439 |
Q |
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| T |
17032100 |
ttgtaactctcttttagttattagtg-tttataatttgccttttaaaatacatttcaattttctaact-tttaaatttctc |
17032022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 439
Target Start/End: Complemental strand, 17562536 - 17562458
Alignment:
| Q |
359 |
ttgtaacaatctttttgttattagtgctttataattttccttttaaattacatttcaattttctaactctttaaatttctc |
439 |
Q |
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||||||| |||||| |||||||||| |||||||||| ||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
17562536 |
ttgtaactctcttttagttattagtg-tttataatttgccttttaaaatacatttcaattttctaact-tttaaatttctc |
17562458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 421
Target Start/End: Original strand, 17030575 - 17030627
Alignment:
| Q |
368 |
tctttttgttattagtgctttataattttccttttaaattacatttcaattttc |
421 |
Q |
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|||||| |||||||||| |||||||||||||||||||| ||||||||| ||||| |
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| T |
17030575 |
tcttttagttattagtg-tttataattttccttttaaaatacatttcagttttc |
17030627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 421
Target Start/End: Original strand, 17561011 - 17561063
Alignment:
| Q |
368 |
tctttttgttattagtgctttataattttccttttaaattacatttcaattttc |
421 |
Q |
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|||||| |||||||||| |||||||||||||||||||| ||||||||| ||||| |
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| T |
17561011 |
tcttttagttattagtg-tttataattttccttttaaaatacatttcagttttc |
17561063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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