View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4739_low_10 (Length: 231)
Name: NF4739_low_10
Description: NF4739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4739_low_10 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 44662633 - 44662424
Alignment:
| Q |
1 |
tatgctaagaatataaccatgtacaaactgcgtaacttaggtaggtttttggtgcttcatatttttctatctttagatactattttataccaaaaaatac |
100 |
Q |
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|||||| ||| |||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44662633 |
tatgctcagactataaccaagtacaacatgcgtaacttaggtaggcttttggtgcttcatatttttctatctttagatactattttataccaaaaaatac |
44662534 |
T |
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| Q |
101 |
cttgtagacaattaattcaatctcttattgattgaaatttataga-tgacttatcggattttgagtggtggtcgaatctgatcgtttgaagcatcgtacc |
199 |
Q |
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| T |
44662533 |
cttgtagacaattaattcaatctcttattgattgacatttatagaccgacttatcggattttgagtggtggtcgaatctgatcgtttgaagcatcgtacc |
44662434 |
T |
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| Q |
200 |
ttcgccggct |
209 |
Q |
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|||| ||||| |
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| T |
44662433 |
ttcgtcggct |
44662424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 42919751 - 42919709
Alignment:
| Q |
149 |
cttatcggattttgagtggtggtcgaatctgatcgtttgaagc |
191 |
Q |
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| T |
42919751 |
cttatcggatgttgagtggtgggcgactctgatcgtttgaagc |
42919709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 1918454 - 1918498
Alignment:
| Q |
146 |
tgacttatcggattttgagtggtggtcgaatctgatcgtttgaag |
190 |
Q |
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| T |
1918454 |
tgacatatcggatgttgagtggtggtcgaatctgatcgtttgaag |
1918498 |
T |
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Target: scaffold0224 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 18580 - 18622
Alignment:
| Q |
149 |
cttatcggattttgagtggtggtcgaatctgatcgtttgaagc |
191 |
Q |
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| T |
18580 |
cttatcggatgttgagtggtgggcgactctgatcgtttgaagc |
18622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 192
Target Start/End: Original strand, 23264820 - 23264849
Alignment:
| Q |
163 |
agtggtggtcgaatctgatcgtttgaagca |
192 |
Q |
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| T |
23264820 |
agtggtggtcgaatctgatcgtttgaagca |
23264849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 36796715 - 36796747
Alignment:
| Q |
160 |
ttgagtggtggtcgaatctgatcgtttgaagca |
192 |
Q |
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| T |
36796715 |
ttgagtggtggtcgcatctgatcgtttgaagca |
36796747 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 1799254 - 1799287
Alignment:
| Q |
159 |
tttgagtggtggtcgaatctgatcgtttgaagca |
192 |
Q |
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| T |
1799254 |
tttgagtggtggtcgaagctgatcgtttgaagca |
1799287 |
T |
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