View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4739_low_2 (Length: 492)
Name: NF4739_low_2
Description: NF4739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4739_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 30895486 - 30895737
Alignment:
| Q |
17 |
atgaatagggttgaaatgaagtttctttttcccgctaggtttagccaatcaacaagaacaaaaacaatggaaaggtagataatgaactaaattataatca |
116 |
Q |
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| T |
30895486 |
atgaatagggttgaaatgaagtttattttccctgctaggtttagccaatcaacaagaacaaaaacaatggaaaggtagataatgaactaaattataatca |
30895585 |
T |
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| Q |
117 |
aactcagattactgataaaccatatagtagtgtaaagattattgtaca--aacaaatgctgttgaaataccatcttctatccatgaatgtcagtttattt |
214 |
Q |
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| T |
30895586 |
aactcagattactgataaaccatatagtagtgtaaagattattgtacaataacaaatgctgttgaaataccatcttctaaccatgaatgtccgtttattt |
30895685 |
T |
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| Q |
215 |
atttacaagccaatcattgctaattccagcatatatatactcacaaaataat |
266 |
Q |
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| T |
30895686 |
atttacaagtcaatcattgttaattccagcatatatatactcgcaaaataat |
30895737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 60 - 470
Target Start/End: Complemental strand, 30716757 - 30716342
Alignment:
| Q |
60 |
gccaatcaacaaga-acaaaaacaatggaaaggtagataatgaactaaattataatcaaactcagattactgataaaccatatagtagtgtaaagattat |
158 |
Q |
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| T |
30716757 |
gccaagcaacaagagacaaaaacaatggaaaggtagataatgaactaaataacaatcaaaatcagattacctataaaccata---tagtgtaaagattat |
30716661 |
T |
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| Q |
159 |
tgtaca--aacaaatgctgttgaaataccatcttctatccatgaatgtcagtttatttatttacaagccaatcattgctaattccagcatatata-tact |
255 |
Q |
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| T |
30716660 |
tgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcacgtttatttattcacaaaccaatcactgctaattcca-catatatactact |
30716562 |
T |
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| Q |
256 |
cacaaaataatattttcatgcatggtaagtagtaattcaattctatgccaaaattagtctatatactacaaaactacttccctactaagtgaataaagct |
355 |
Q |
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| T |
30716561 |
agctaaataatattttcatgcatggta---agttattcaattctatgccaaaatgagtctata---tacaaaacaacttccctactaattaaataaagct |
30716468 |
T |
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| Q |
356 |
cgatgt---aaacacaatttctaaatctatcggtcataatgagaat--------ccgagattcaaggctgttatt-cttgaaagggttttcttccaacac |
443 |
Q |
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| T |
30716467 |
ctatgtgtaaaacacaa-ttctgaatctatcagtcataatagaaataaaaataaactagactcaaggctgctattccttgaaagagttttcttccaacac |
30716369 |
T |
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| Q |
444 |
atatgttttgtgcattaacactggtct |
470 |
Q |
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| T |
30716368 |
agctgttttgtgcattgacactggtct |
30716342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 60 - 470
Target Start/End: Complemental strand, 28119315 - 28118903
Alignment:
| Q |
60 |
gccaatcaacaaga-acaaaaacaatggaaaggtagataatgaactaaattataatcaaactcagattactgataaaccatatagtagtgtaaagattat |
158 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||| | ||||||| ||||||||| |||||||||| ||||||||||||| |
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| T |
28119315 |
gccaagcaacaagagacaaaaacaatggaaaggtagataatgaactaaataacaatcaaaatcagattacctataaaccata-----gtgtaaagattat |
28119221 |
T |
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| Q |
159 |
tgtacaa--acaaatgctgttgaaataccatcttctatccatgaatgtcagtttatttatttacaagccaatcattgctaattccagcatatata-tact |
255 |
Q |
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||||||| |||||| || |||||||||||||||||| | ||||||| |||||||||||| |||| ||||||| |||||||||||||||||||| |||| |
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| T |
28119220 |
tgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcaagtttatttattcacaaaccaatcactgctaattccagcatatatactact |
28119121 |
T |
|
| Q |
256 |
cacaaaataatattttcatgcatggtaagtagtaattcaattctatgccaaaattagtctatatactacaaaactacttccctactaagtgaataaagct |
355 |
Q |
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| T |
28119120 |
agctagataatattttcatgcatggta---agttattcaattctatgccaaaatgagtctata---tacaaaacaacttccctactaattaaataaagct |
28119027 |
T |
|
| Q |
356 |
cgatgt-aaacacaatttctaaatctatcggtcataatgagaat--------ccgagattcaaggctgttatt-cttgaaagggttttcttccaacacat |
445 |
Q |
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| ||| |||||||| |||| || ||||| |||||||| ||| | ||| ||||||||| |||| |||||||| |||||||||||||| | |
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| T |
28119026 |
ctgtgtaaaacacaa-ttctgaacctatcagtcataatagaaataaaaataaactagactcaaggctgctattccttgaaagagttttcttccaacagag |
28118928 |
T |
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| Q |
446 |
atgttttgtgcattaacactggtct |
470 |
Q |
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|||||||||||||||||||| |||| |
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| T |
28118927 |
atgttttgtgcattaacactagtct |
28118903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 971151 - 971313
Alignment:
| Q |
60 |
gccaatcaacaaga-acaaaaacaatggaaaggtagataatgaactaaattataatcaaactcagattactgataaaccatatagtagtgtaaagattat |
158 |
Q |
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||||| |||||||| ||||||||||| ||||||||||||||||||||||| | ||||||| ||||||||| |||||||||| ||||||||||||||| |
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| T |
971151 |
gccaagcaacaagagacaaaaacaatcgaaaggtagataatgaactaaataacaatcaaaatcagattacctataaaccata---tagtgtaaagattat |
971247 |
T |
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| Q |
159 |
tgtaca--aacaaatgctgttgaaataccatcttctatccatgaatgtcagtttatttatttacaa |
222 |
Q |
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|||||| ||||||| || |||||||||||||||||| | ||||||| ||||||||||| |||| |
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| T |
971248 |
tgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcacgtttatttattcacaa |
971313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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