View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4739_low_3 (Length: 351)
Name: NF4739_low_3
Description: NF4739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4739_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 336
Target Start/End: Complemental strand, 19345686 - 19345364
Alignment:
| Q |
14 |
gagatgtatgttcctgcactattttttggggctcaggtattatatttcacacttatttatattgaagtaacgtatataatatttattttgtaaaaggaac |
113 |
Q |
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| T |
19345686 |
gagatgtatgttcctgcactattttttggggctcaggtattatatttcacacttatttatattgaagtaacgtatataatatttattttgtaaaaggaac |
19345587 |
T |
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| Q |
114 |
aatctcatcatggataaattatttgataaattgatagttattaataggaaactattaattttgttatataaacttgtaggaatgcaagacacaaaggtgc |
213 |
Q |
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| T |
19345586 |
aatctcatcatggataaattacttgataaattgatagttattaataggaaactattaattttgatatataaacttgtaggaatgcaagacacaaaggtcc |
19345487 |
T |
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| Q |
214 |
gataaaattttctagatttaattttctttatgtgtttaccttaaccattcattgttagatatattggtcatggcttagttctcttattctcatataaaat |
313 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
19345486 |
gataaaattttccagatttaattttctttatgtatttaccttaaccattcattgttagatatattggtcatggcctagttctcttattctcatataaaat |
19345387 |
T |
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| Q |
314 |
gccttatggtaactaagagtttg |
336 |
Q |
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| T |
19345386 |
gccttatggtaactaagagtttg |
19345364 |
T |
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