View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4739_low_4 (Length: 285)
Name: NF4739_low_4
Description: NF4739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4739_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 12 - 267
Target Start/End: Original strand, 6455642 - 6455896
Alignment:
| Q |
12 |
atcatcatattcacatcgatgtacatcgatgttattggaaagcgaaaatgcacaatagataagaaataatccacacacnnnnnnnnnnnnnnnnctaaat |
111 |
Q |
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| T |
6455642 |
atcatcatattcacatcgatgtacatcgatgttattggaaagcgaaaatgcacaatagataagaaataatccacaca-gactttttttttctttctaaat |
6455740 |
T |
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| Q |
112 |
agagatactgttgggaattcctctaaaagttaaaccttcttcacttgaacgaaggagcaaagtgtaaggcaattcaactggtccagtgcggtttttcaaa |
211 |
Q |
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| T |
6455741 |
agagatactgttgggaattcctctaaaagttaaaccttcttcacttgaacgaaggagcaaagtgtagggcaattcaactggtccagtgcggtttttcaaa |
6455840 |
T |
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| Q |
212 |
ctagaatctttgttcctcccgtggattttcccttcaatttcagatagtttgcttcc |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6455841 |
ctagaatctttgttcctcccgtggattttcccttcaatttcagatagtttgcttcc |
6455896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 106 - 267
Target Start/End: Original strand, 6449268 - 6449429
Alignment:
| Q |
106 |
ctaaatagagatactgttgggaattcctctaaaagttaaaccttcttcacttgaacgaaggagcaaagtgtaaggcaattcaactggtccagtgcggttt |
205 |
Q |
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| T |
6449268 |
ctaaatagagatactgttgggaattcctctgaatgttaaaccttcttcacttgaacgaagtagcaaagtgtagggcaattgcactggtccggtgcggttt |
6449367 |
T |
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| Q |
206 |
ttcaaactagaatctttgttcctcccgtggattttcccttcaatttcagatagtttgcttcc |
267 |
Q |
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| T |
6449368 |
ctcaaactagactcattgttcctcttagtgattttcccttcaatttcagttagtttgcttcc |
6449429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 6261733 - 6261780
Alignment:
| Q |
113 |
gagatactgttgggaattcctctaaaagttaaaccttcttcacttgaa |
160 |
Q |
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| T |
6261733 |
gagatactgttgggaattcctctaaaagtaagtccttcctcacttgaa |
6261780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 9606746 - 9606643
Alignment:
| Q |
108 |
aaatagagatactgttgggaattcctctaaaagttaaaccttcttcacttgaacgaaggagcaaagtgtaaggcaattcaactggtccagtgcggttttt |
207 |
Q |
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||||||||||||||||||||||||||||||| ||||| || |||||||| |||||| | |||||||| || ||||||| || || ||||| || ||||| |
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| T |
9606746 |
aaatagagatactgttgggaattcctctaaaggttaatccatcttcactagaacgatgaagcaaagtatagggcaattgcaccggcccagttcgattttt |
9606647 |
T |
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| Q |
208 |
caaa |
211 |
Q |
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|||| |
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| T |
9606646 |
caaa |
9606643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 42691751 - 42691823
Alignment:
| Q |
110 |
atagagatactgttgggaattcctctaaaagttaaaccttcttcacttgaacgaaggagcaaagtgtaaggca |
182 |
Q |
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||||||||||| || ||||||||||||||||||| ||||| ||||| ||| || | |||||||| ||||||| |
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| T |
42691751 |
atagagatactattaggaattcctctaaaagttagtccttcctcactagaaggatgaagcaaagtataaggca |
42691823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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