View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4739_low_5 (Length: 255)
Name: NF4739_low_5
Description: NF4739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4739_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 47301092 - 47301321
Alignment:
| Q |
11 |
cataggaatattgaaacgcaaaccttcttgatcatctatgtcagataatagtttaacttcacaaggagtgggtgcagctggtggcaccaactctggttgg |
110 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47301092 |
cataggaatattgaagcgcaaaccttcttgatcatctatgtcagataatagtttaacttcacaaggagtgggtgcagctggtggcaccaactctggttgg |
47301191 |
T |
|
| Q |
111 |
cacctccgcactgtgaacaacaatggtgatgaagtcatgatatcagaaggaaggggaaaaaagacagaagttttatataagtggttcgtttcgtttgagt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47301192 |
cacctccgcactgtgaacaacaatggtgatgaagtcatgatatcagaaggaaggggaaaaaagacagaagttttatataagtggttcgtttcgtttaagt |
47301291 |
T |
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| Q |
211 |
gtgttgctatacattgattgccttctatct |
240 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
47301292 |
gtgttgctatacattgattgccttctatct |
47301321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 47296503 - 47296727
Alignment:
| Q |
14 |
aggaatattgaaacgcaaaccttcttgatcatctatgtcagataatagtttaacttcacaaggagtgggtgcagctggtggcaccaactctggttggcac |
113 |
Q |
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|||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47296503 |
aggactattgaatcgcataccttcttgatcatctatgtcagataatagtttaacttcacgaggagtgggtgcagctggtggcaccaactctggttggcac |
47296602 |
T |
|
| Q |
114 |
ctccgcactgtgaacaacaatggtgatgaagtcatgatatcagaaggaaggggaaaaaagacagaagttttatataagtggttcgtttcgtttgagtgtg |
213 |
Q |
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|||||||||||||||| || | ||||||||||||||||||| |||||||| |||||||||||||||||||||| || || ||||||||||||| ||||| |
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| T |
47296603 |
ctccgcactgtgaacattaacgatgatgaagtcatgatatcaaaaggaaggagaaaaaagacagaagttttatacaactgtttcgtttcgtttgggtgtg |
47296702 |
T |
|
| Q |
214 |
ttgctatacattgattgccttctat |
238 |
Q |
| |
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||||||| |||||||||||| |||| |
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| T |
47296703 |
ttgctatgcattgattgcctcctat |
47296727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 47240814 - 47240597
Alignment:
| Q |
20 |
attgaaacgcaaaccttcttgatcatctatgtcagataatagtttaacttcacaaggagtgggtgcagctggtggcaccaactctggttggcacctccgc |
119 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47240814 |
attgaatcgcaaaccttcttgatcatctatgtcagataatagtttaacttcgcgaggagtgggtgcagctggtggcaccaactctggttggcacctccgc |
47240715 |
T |
|
| Q |
120 |
actgtgaacaacaatggtgatgaagtcatgatatcagaaggaaggggaaaaaagacagaagttttatataagtggttcgtttcgtttgagtgtgttgcta |
219 |
Q |
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| T |
47240714 |
actgtgaacattaacgatgatgaagtcatgatattaaaaggaagggaaaaaaag-gacaagttttatataacggtttcgtttcgtttgagtgtgttgtta |
47240616 |
T |
|
| Q |
220 |
tacattgattgccttctat |
238 |
Q |
| |
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|| |||||||||||||||| |
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| T |
47240615 |
tatattgattgccttctat |
47240597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 153
Target Start/End: Complemental strand, 47275256 - 47275115
Alignment:
| Q |
12 |
ataggaatattgaaacgcaaaccttcttgatcatctatgtcagataatagtttaacttcacaaggagtgggtgcagctggtggcaccaactctggttggc |
111 |
Q |
| |
|
||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
47275256 |
ataggcatattgaaacgcaagcattcttgatcatctatgtcagataatagtttaacttcgcgaggagtgggtgcagctggtggcaccaactctggttggc |
47275157 |
T |
|
| Q |
112 |
acctccgcactgtgaacaacaatggtgatgaagtcatgatat |
153 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
47275156 |
acctccgcactgtgaacaacaatggtgatgaagtcatgatat |
47275115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 47281994 - 47281862
Alignment:
| Q |
12 |
ataggaatattgaaacgcaaaccttcttgatcatctatgtcagataatagtttaacttcacaaggagtgggtgcagctggtggcaccaactctggttggc |
111 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
47281994 |
ataggcatattgaaacgcaaacattcttgatcatctatgtcagataatagtttaacttcgcgaggagtgggtgcagctggtggcaccaactctggttggc |
47281895 |
T |
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| Q |
112 |
acctccgcactgtgaacaacaatggtgatgaag |
144 |
Q |
| |
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||||||||||||| ||||| ||||||||||||| |
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| T |
47281894 |
acctccgcactgtcaacaataatggtgatgaag |
47281862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 11 - 153
Target Start/End: Complemental strand, 47264689 - 47264547
Alignment:
| Q |
11 |
cataggaatattgaaacgcaaaccttcttgatcatctatgtcagataatagtttaacttcacaaggagtgggtgcagctggtggcaccaactctggttgg |
110 |
Q |
| |
|
|||||||||||||||||| || |||||||| |||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
47264689 |
cataggaatattgaaacgtaagccttcttggtcatctatgtcagacaatagtttaacttcgcgaggagtgggtgcagctggtggcaccaactctggttgg |
47264590 |
T |
|
| Q |
111 |
cacctccgcactgtgaacaacaatggtgatgaagtcatgatat |
153 |
Q |
| |
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| |||||||||||||||||| ||||||| |||||||||||||| |
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| T |
47264589 |
ctcctccgcactgtgaacaataatggtgctgaagtcatgatat |
47264547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 47255642 - 47255512
Alignment:
| Q |
14 |
aggaatattgaaacgcaaaccttcttgatcatctatgtcagataatagtttaacttcacaaggagtgggtgcagctggtggcaccaactctggttggcac |
113 |
Q |
| |
|
||||| ||||||||| | |||||||||||||| |||||||| | |||||||||||| |||||||||||||||||| | ||||||||||||||| || |
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| T |
47255642 |
aggaagattgaaacgaaggccttcttgatcatcaatgtcagagaggagtttaacttcatgaggagtgggtgcagctggaagtaccaactctggttgggac |
47255543 |
T |
|
| Q |
114 |
ctccgcactgtgaacaacaatggtgatgaag |
144 |
Q |
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||||||||||||||||| ||||||||||||| |
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| T |
47255542 |
ctccgcactgtgaacaataatggtgatgaag |
47255512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 32729355 - 32729132
Alignment:
| Q |
14 |
aggaatattgaaacgcaaaccttcttgatcatctatgtcagataatagtttaacttcacaaggagtgggtgcagctggtggcaccaactctggttggcac |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
32729355 |
aggaacattgaaacgcaaaccttcttgatcatctatatcagataatagtttaacttcgcgaggagtgggtgcaactggtggcaccaactctggttggcac |
32729256 |
T |
|
| Q |
114 |
ctccgcactgtgaacaacaatggtgatgaagtcatgatatcagaaggaaggggaaaaaagacagaagttttatataagtggttcgtttcgtttgagtgtg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||| || ||||||| | |||||| |||||| |||||||| |||||||||| |
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| T |
32729255 |
ctccgcactgtgaacaacaatggtgatgaagtcatgatattaaaaggaaaggaaaaaaag-gacaagtttaatataacgatttcgtttcctttgagtgtg |
32729157 |
T |
|
| Q |
214 |
ttgctatacattgattgccttctat |
238 |
Q |
| |
|
||| |||| |||||||||||||||| |
|
|
| T |
32729156 |
ttgttatatattgattgccttctat |
32729132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 20511690 - 20511577
Alignment:
| Q |
16 |
gaatattgaaacgcaaaccttcttgatcatctatgtcagataatagtttaacttcacaaggagtgggtgcagctggtggcaccaactctggttggcacct |
115 |
Q |
| |
|
|||||||| |||| | || || |||||||||||||||||||| || ||||| ||||| |||||||||||||||||| || |||| || |||||||||||| |
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| T |
20511690 |
gaatattgcaacggagacttttttgatcatctatgtcagatagtattttaaattcacgaggagtgggtgcagctggaggtaccagctgtggttggcacct |
20511591 |
T |
|
| Q |
116 |
ccgcactgtgaaca |
129 |
Q |
| |
|
||||| ||||||| |
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|
| T |
20511590 |
tcgcacagtgaaca |
20511577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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