View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4739_low_7 (Length: 247)
Name: NF4739_low_7
Description: NF4739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4739_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 6408331 - 6408388
Alignment:
| Q |
1 |
atgattagtaatgaatttgtgtttaattttgtgcattcttctatgttttagttttcat |
58 |
Q |
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| T |
6408331 |
atgattagtaatgaatttgtgtttaattctgtgcattcttctatgttctagttttcat |
6408388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 22221664 - 22221624
Alignment:
| Q |
18 |
tgtgtttaattttgtgcattcttctatgttttagttttcat |
58 |
Q |
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| T |
22221664 |
tgtgtttaattttgtgtattgttctatgttttagtcttcat |
22221624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 4966547 - 4966507
Alignment:
| Q |
18 |
tgtgtttaattttgtgcattcttctatgttttagttttcat |
58 |
Q |
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| T |
4966547 |
tgtgtttaattttgtgcattcttctatgttttagttttcat |
4966507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9818504 - 9818465
Alignment:
| Q |
1 |
atgattagtaatgaatttgtgtttaattttgtgcattctt |
40 |
Q |
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| T |
9818504 |
atgattagtaatgaatatgtgtttaattttgtgcgttctt |
9818465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9824222 - 9824171
Alignment:
| Q |
1 |
atgattagtaatgaatttgtgtttaattttgtgcattcttctatgttttagttt |
54 |
Q |
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|
| T |
9824222 |
atgattagtaatgaatatgt--ttaattttgtgcattctttgatgttttagttt |
9824171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 43545726 - 43545780
Alignment:
| Q |
2 |
tgattagtaatgaatttgtgttt-aattttgtgcattcttctatgttttagtttt |
55 |
Q |
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|||||||||| |||| ||||||| |||||||||| || ||||||||||||||||| |
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| T |
43545726 |
tgattagtaacgaatatgtgttttaattttgtgcgtttttctatgttttagtttt |
43545780 |
T |
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