View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4740-Insertion-1 (Length: 1080)
Name: NF4740-Insertion-1
Description: NF4740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4740-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 599; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 8 - 670
Target Start/End: Complemental strand, 1175935 - 1175272
Alignment:
| Q |
8 |
aagcactttatggttttgatgctcctaggaaaaagaaggcacaaaacaagacatgtaattgttggctaaagtgttgttgttgtggattgtgttgcatggg |
107 |
Q |
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| T |
1175935 |
aagcactttatggttttgatgctcctaggaaaaagaaggcacaaaacaagacatgtaattgttggctaaagtgttgttgttgtggattgtgttgtatggg |
1175836 |
T |
|
| Q |
108 |
aaagaggaagaagaaaaagatgaagaagtctaagtttgagttaatggatagcactcatagaaaagtacattctgaatcatctgttgctgggagtactaaa |
207 |
Q |
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| T |
1175835 |
aaagaggaagaagaaaaagatgaagaagtctaagtttgagttaatggatagtactcatagaaaagtacattctgaatcatctgttgctgggagtactaaa |
1175736 |
T |
|
| Q |
208 |
ggtaaattctctagttttcatacatgttacattcaaccctnnnnnnntaagacttaaacataatgactattctaagattatatccaaaagtaatgtctta |
307 |
Q |
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| T |
1175735 |
ggtaaattctctagttttcgtacatgttacattcaaccctaaaaaaataagacttaaacataatgactattctaagattatatccaaaagtaatgtctta |
1175636 |
T |
|
| Q |
308 |
aaaatcagaccggaaagttcaaccgattaaatcagtaagttagttgattggtttgatgtcggttatattgcaatttagttgagctgaagttgaactatag |
407 |
Q |
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| T |
1175635 |
aaaatcagaccgaaaagttcacccgattaaatcagtaagttagttgattggtttgatgtcggttatattgcaatttagttgagctgaagttgaactatag |
1175536 |
T |
|
| Q |
408 |
ttggttcaaatgattttcatttttcaattgttgtttatttatcatctgatttaatcgtagttgaaccgattgaatcaattaaacctaacttacgggtttc |
507 |
Q |
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| T |
1175535 |
ttggttcaaatggttttcatttttcaattgttgtttatttatcatctgatttagtcgtagttgaaccgattgaatcaattaaacctaacttacgggtttc |
1175436 |
T |
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| Q |
508 |
accggtactatcttt-gtctaatgttttaaatattactcaaaagaaaaaggcttttgtaagaattcctagtttcattataggaaaatgttaggttctgtg |
606 |
Q |
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| T |
1175435 |
accggtactatctttggtctattgttttaaatattactcaaaagaaaaaggcttttgtaagaatacctagtttcattataggaaaatgttaggttctgtg |
1175336 |
T |
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| Q |
607 |
acttttgtcaaatccaagtaaatatgtatgtaatactaatcttattcaacaagaacatgtatga |
670 |
Q |
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| T |
1175335 |
acttttgtcaaatccaagtaaatatgtatgtaatactaatcttattcaacaagaacatgtatga |
1175272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 685 - 1066
Target Start/End: Complemental strand, 1175235 - 1174843
Alignment:
| Q |
685 |
aaaatctcatatgtaggaaatgaagatgaagatggcttgtctataatctcaagtcaaaagttagtcaagaaatttggagaatctccaattttcattgcat |
784 |
Q |
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| T |
1175235 |
aaaatctcaaatgtaggaaatgaaaatgaagatggcttgtctataatctcaagtcaaaagttagtcaagaaatttggagaatctccaattttcattgcat |
1175136 |
T |
|
| Q |
785 |
ctactcaattggttgatggtgagacactagagcaaggtgggattgcttctcaacttacagaagcaatacatgtcattagttgtggctatgaagagaaaac |
884 |
Q |
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| T |
1175135 |
ctactcaattggttgatggtgagacactaaagcatggtgggattgcttctcaacttacagaagcaatacatgtcattagttgtggctatgaagagaaaac |
1175036 |
T |
|
| Q |
885 |
agaatggg--aaagaggtaaataatttgtttccattac-tttcta-tctaagtc-tgtttgataaacagcttaatttctacgcacttatcatataagcg- |
978 |
Q |
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| T |
1175035 |
agaatggggaaaagaggtaaataatttgtttccattacttttctattctaagtcttgtttgataaacagcttaatttctacgcacttatcatataagcgt |
1174936 |
T |
|
| Q |
979 |
ttaggtataagttatttctataataaaa--cagttatagacacgtcatatgttg-tttcgtaagatcttaaaacac--tgtcgactatataaa |
1066 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| | ||||||||||||| |
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| T |
1174935 |
ttaggtataagttatttctataataaaaacaagttatagacacatcatatgttgttttcgtaagatcttaaaacactttttcgactatataaa |
1174843 |
T |
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