View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4740-Insertion-10 (Length: 154)
Name: NF4740-Insertion-10
Description: NF4740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4740-Insertion-10 |
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| [»] chr6 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 6e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 6e-66
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 24892886 - 24892740
Alignment:
| Q |
8 |
caacacaccgaatcactctacaccgctcttcctcactcaatagctgaagtcgttaacaactatcgagctaccttcaatccaaccgttgaagatgtcttca |
107 |
Q |
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| T |
24892886 |
caacacaccgaatcactctacaccgcccttcctcactcaatagctgaagccgttaataactatcgagctaccttcaatccaaccgttgaagatgtcttca |
24892787 |
T |
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| Q |
108 |
tatggaatcataacaagaacggtgtttactctacaaaaagtggttac |
154 |
Q |
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| T |
24892786 |
tttggaatcacaacaagaacggtgtttactctacaaaaagtggttac |
24892740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 24989658 - 24989566
Alignment:
| Q |
62 |
aacaactatcgagctaccttcaatccaaccgttgaagatgtcttcatatggaatcataacaagaacggtgtttactctacaaaaagtggttac |
154 |
Q |
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| T |
24989658 |
aacaactatcaagctagcttcaattcaaccgttgatgatgcgtttatttggaatcataacaagaacggtgtttactctacaaaaagtggttac |
24989566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 2e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 8 - 154
Target Start/End: Original strand, 23425601 - 23425747
Alignment:
| Q |
8 |
caacacaccgaatcactctacaccgctcttcctcactcaatagctgaagtcgttaacaactatcgagctaccttcaatccaaccgttgaagatgtcttca |
107 |
Q |
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| T |
23425601 |
caacacaccgaatctctctacactgcccttcctcactcaatagctgatgccgttaacaattatcgagctaccttcaatccaacggttgaaggtgtcttca |
23425700 |
T |
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| Q |
108 |
tatggaatcataacaagaacggtgtttactctacaaaaagtggttac |
154 |
Q |
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| T |
23425701 |
tttggaatcataacaagaacggtgtttactctacaaaaagtggttac |
23425747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 23206916 - 23206774
Alignment:
| Q |
8 |
caacacaccgaatcactctacaccgctcttcctcactcaatagctgaagtcgttaacaactatcgagctaccttcaatccaaccgttgaagatgtcttca |
107 |
Q |
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||||||||| || | || |||||||| |||||||| ||||||||||| ||| |||| |||| |||||||||||||||||||||| ||||||||||| | |
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| T |
23206916 |
caacacacccaagctctatacaccgcccttcctcaatcaatagctgacaccgtcaacacctatagagctaccttcaatccaaccgtcgaagatgtcttta |
23206817 |
T |
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| Q |
108 |
tatggaatcataacaagaacggtgtttactctacaaaaagtgg |
150 |
Q |
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| T |
23206816 |
tttggaacaataacaagaacggtgtctactctacaaaaagtgg |
23206774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 575596 - 575662
Alignment:
| Q |
87 |
caaccgttgaagatgtcttcatatggaatcataacaagaacggtgtttactctacaaaaagtggtta |
153 |
Q |
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| T |
575596 |
caaccgttgatgatgcctttatttggaatcataacaagaatggtgtttactcaaccaaaagtggtta |
575662 |
T |
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