View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4740-Insertion-2 (Length: 1020)
Name: NF4740-Insertion-2
Description: NF4740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4740-Insertion-2 |
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| [»] scaffold0628 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 580; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 299 - 1010
Target Start/End: Original strand, 32263972 - 32264683
Alignment:
| Q |
299 |
gtgtggatgttacgcttatatgcggcatctttgtagtttgtttaccgcctctatgcgcgtctttgcagaggattgatttcaataatattcgccgatttaa |
398 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||| |
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| T |
32263972 |
gtgtggatgttacgtctatatgcggcatctttgtagtttgtttaccgcctctatgcg--tctttgcagagaattgatttcaataatatttgccgatttaa |
32264069 |
T |
|
| Q |
399 |
aagaagnnnnnnncaatagtgtgttgatgggtaatgtgtggcttgatgactttgagcaattgaaatctctatttcctctagtcattttcttcttccaatt |
498 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32264070 |
aagaagaaaaaaacaatagtgtgttgatgggtaatgtgtggcttgatgactttgagcaattgaaatctctatttcctctagtcattttcttcttccaatt |
32264169 |
T |
|
| Q |
499 |
ttaatttcacattatgtataaggaaagagaatcgttatacatgactatagataatgacagtggcaggcccaattgaacttgtattatgtatgtactccnn |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32264170 |
ttaatttcacattatgtataaggaaagagaatcgttatacatgactatagataatgacagtggcaggcccaattgaacttgtattatgtatgtactccaa |
32264269 |
T |
|
| Q |
599 |
nnnnnttctagtcgaatcttaatttaattcctcatcgaaaaatctttttgcaatcctcgtatagtagctagcattatctaattgtaatgattccacaaac |
698 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32264270 |
aaaaattctagtcgaatcttaatttaattcctcatcgaaaaatctttttgcaatcctcgtatagtagctagcattatctaattgtaatgattccacaaac |
32264369 |
T |
|
| Q |
699 |
cttacagttctgttcttatgtgtatgttgaatccacatgatagtgcagaggctagtagtatatataatatcagtgtggtcctcttaaacatttcaacagg |
798 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32264370 |
cttacagttctgttcttatgtgtatattgagtccacatgatattgcagaggctagtagtatatataatatcagtgtggtcctcttaaacatttcaacagg |
32264469 |
T |
|
| Q |
799 |
tnnnnnnnttcaataagcaacaccatatatagtaattgatatgaaagaaaaaacatacaaattcttctactaatagaactacatgtcagacacgtacaca |
898 |
Q |
| |
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| ||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32264470 |
taaaaaaattcaataagcaacaccacatatagtaattggtataaaagaaaaaacatacaaattcttctactaatagaactacatgccagacacgtacaca |
32264569 |
T |
|
| Q |
899 |
tggtgcaattatatgctttttctaccttaagtgcttggcaaccttacaaccacctcaacccac-attttatcttc-attaattaaaaataagtttgcaaa |
996 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
32264570 |
tggtgcaattatatgctttttctaccttaagtgcttggcaaccttacaaccacctcaacccacaattttatcttcaattaattaaaaataagtttgcaaa |
32264669 |
T |
|
| Q |
997 |
ttgttcatagttct |
1010 |
Q |
| |
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|||||||||||||| |
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| T |
32264670 |
ttgttcatagttct |
32264683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 5e-99
Query Start/End: Original strand, 5 - 212
Target Start/End: Original strand, 32263659 - 32263866
Alignment:
| Q |
5 |
acaaatacatctttaaagtgtagattagaagtttggatttggattgtctaaagttagcacacattcacgtcgtcagcatattaatagtatgtggatcaaa |
104 |
Q |
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|||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32263659 |
acaaatacatctctagagtatagattagaagtttggatttggattgtctaaagttagcacacattcacgtcgtcagcatattaatagtatgtggatcgaa |
32263758 |
T |
|
| Q |
105 |
ataagattcaaatttcaagttcggtattttaattttcttaaaatatcaaaatctacattggaatttgaattgtcaagtctaacaaccactagtgtatgga |
204 |
Q |
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| T |
32263759 |
ataagatccaaatttcaagttcggtattttaattttcttaaaatatcaaaatctacattgaaatttgaattgtcaagtctaacaaccactagtgtatgga |
32263858 |
T |
|
| Q |
205 |
actgaaat |
212 |
Q |
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|||||||| |
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| T |
32263859 |
actgaaat |
32263866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0628 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0628
Description:
Target: scaffold0628; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 807 - 878
Target Start/End: Original strand, 6516 - 6588
Alignment:
| Q |
807 |
ttcaataagcaacaccatatatagtaattgatatgaaagaaa-aaacatacaaattcttctactaatagaact |
878 |
Q |
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||||||||||||||||| |||| |||||||| | ||| |||| || |||||||||| |||||||| ||||||| |
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| T |
6516 |
ttcaataagcaacaccacatatcgtaattgacacgaaggaaagaatcatacaaatttttctactattagaact |
6588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 332
Target Start/End: Complemental strand, 14848683 - 14848652
Alignment:
| Q |
301 |
gtggatgttacgcttatatgcggcatctttgt |
332 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
14848683 |
gtggatgttacgcttatatgcggcatctttgt |
14848652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 301 - 334
Target Start/End: Original strand, 18055072 - 18055105
Alignment:
| Q |
301 |
gtggatgttacgcttatatgcggcatctttgtag |
334 |
Q |
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||||||||||||| |||||||||||||||||||| |
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| T |
18055072 |
gtggatgttacgcctatatgcggcatctttgtag |
18055105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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