View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4740-Insertion-3 (Length: 1004)
Name: NF4740-Insertion-3
Description: NF4740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4740-Insertion-3 |
 | |
|
| [»] chr4 (14 HSPs) |
| |
|
| [»] chr7 (3 HSPs) |
| |
|
| [»] scaffold0169 (5 HSPs) |
| |
|
| [»] scaffold0134 (1 HSPs) |
| | |
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| [»] scaffold0009 (1 HSPs) |
| | |
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| [»] scaffold0163 (1 HSPs) |
| | |
|
| [»] scaffold0655 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 721; Significance: 0; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 721; E-Value: 0
Query Start/End: Original strand, 176 - 1004
Target Start/End: Complemental strand, 36650284 - 36649459
Alignment:
| Q |
176 |
gtaggactcgaacttccccacgagtaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagag |
275 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
36650284 |
gtaggactcgaacttccccacgagcaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaaccggatttccagagag |
36650185 |
T |
|
| Q |
276 |
ataaatcgcactaacattatcacaatacaccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaacc |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36650184 |
ataaatcgcactaacattatcacaatacaccaaactagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcagaaacc |
36650085 |
T |
|
| Q |
376 |
acattggcaacgcctcggtattctgcctccgcactagaacgtgacaaagtagctttccgtttggcggaccaagaaattaaattatcaccaagaaacacac |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36650084 |
acattggcaacgcctcggtattctgcctccgcactagaacgtgacaaagtagcttgccgtttggcggaccaagaaattaaattatcaccaagaaacacac |
36649985 |
T |
|
| Q |
476 |
aataaccagatgtagagcgtagggtatccggacacccaccccaatcagcatctgtataagaaatgaaagtggatgtggaggatggatagagatgaagacc |
575 |
Q |
| |
|
|||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |
|
|
| T |
36649984 |
aataaccagacgtagagcgtcgggtatccagacacccaccccaatcagcatctgtataagaaatgagagtggatgtggaggatggatagagatgcaaacc |
36649885 |
T |
|
| Q |
576 |
atgatccagagtaccctgaatgtagcgcacaatgcgcttgagagcatgcatatgttcttcccttgggtcatgcatgaataaacacacctgttgcacatca |
675 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36649884 |
atgatccagagtaccctgaatgtagcgcacaatgcgcttgagagcatgcatatgttcttcccttgggtcatgcatgaataaacacacctgttgcacagca |
36649785 |
T |
|
| Q |
676 |
taagcaatatcaggtctcgtgaaagtgaggtattgaagagcacctacaaggcttcgataatgagatggatctgcatatggtgcgctggaattaacactaa |
775 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36649784 |
taagcaatatcaggtctcgtaaaagtgaggtattgaagagcacctgcaaggcttcgataatgagatggatctgcatatggtgcgctggaattagcactaa |
36649685 |
T |
|
| Q |
776 |
gcttcggtttagtgtcaaccggagtagaagatgatttacatgctgccatgccagcccgttcaatgatctcagctgcatactttcgttgagataagaacaa |
875 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36649684 |
gcttcggtttagtgtcaaccggagtagaagatgatttacatgctgccatgccagcccgttcaatgatctcagctgcatactttcgttgagataagaacaa |
36649585 |
T |
|
| Q |
876 |
tccacctgtatgatgagttacagcgatacccaagaagtaatgtaatgaccccaagtccttcataagcaaattttttactaatggagggatatgatagtca |
975 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| | |||||| |||||||||||||||||| |
|
|
| T |
36649584 |
tccacctgtatgatgagttacagcgatacccaagaagtaatgtaatgaccccaaatccttcat-agcaaattctgtactaa-ggagggatatgatagtca |
36649487 |
T |
|
| Q |
976 |
tgcgaataggcatcagaggaggttgtcag |
1004 |
Q |
| |
|
|||||| | ||||||||||||| |||||| |
|
|
| T |
36649486 |
tgcgaaga-gcatcagaggaggctgtcag |
36649459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 176 - 1004
Target Start/End: Complemental strand, 1853835 - 1853010
Alignment:
| Q |
176 |
gtaggactcgaacttccccacgagtaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagag |
275 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
1853835 |
gtaggactcgaacttccccacgagcaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaaccggatttccagagag |
1853736 |
T |
|
| Q |
276 |
ataaatcgcactaacattatcacaatacaccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaacc |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1853735 |
ataaatcgcactaacattatcacaatacaccaaactagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcagaaacc |
1853636 |
T |
|
| Q |
376 |
acattggcaacgcctcggtattctgcctccgcactagaacgtgacaaagtagctttccgtttggcggaccaagaaattaaattatcaccaagaaacacac |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1853635 |
acattggcaacgcctcggtattctgcctccgcactagaacgtgacaaagtagcttgccgtttggcggaccaagaaattaaattatcaccaagaaacacac |
1853536 |
T |
|
| Q |
476 |
aataaccagatgtagagcgtagggtatccggacacccaccccaatcagcatctgtataagaaatgaaagtggatgtggaggatggatagagatgaagacc |
575 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | ||| |
|
|
| T |
1853535 |
aataaccagatgtagagcggcgggtatccggacacccaccccaatcagcatctgtataggaaatgagagtggatgtggaggatggatagagatgcaaacc |
1853436 |
T |
|
| Q |
576 |
atgatccagagtaccctgaatgtagcgcacaatgcgcttgagagcatgcatatgttcttcccttgggtcatgcatgaataaacacacctgttgcacatca |
675 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1853435 |
atgatccagagttccctgaatgtagcgcacaatgcgcttgagagcatgcatatgttcttcccttgggtcatgcatgaataaacacacctgttgcacagca |
1853336 |
T |
|
| Q |
676 |
taagcaatatcaggtctcgtgaaagtgaggtattgaagagcacctacaaggcttcgataatgagatggatctgcatatggtgcgctggaattaacactaa |
775 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1853335 |
taagcaatatcaggtctcgtaaaagtgaggtattgaagagcacctgcaaggcttcgataatgagatggatctgcatatggtgcgctggaattagcactaa |
1853236 |
T |
|
| Q |
776 |
gcttcggtttagtgtcaaccggagtagaagatgatttacatgctgccatgccagcccgttcaatgatctcagctgcatactttcgttgagataagaacaa |
875 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1853235 |
gcttcggtttagtgtcaaccggagtagaagatgatttacatgctgccatgccagcccgttcaatgatctcagctgcatactttcgttgagataagaacaa |
1853136 |
T |
|
| Q |
876 |
tccacctgtatgatgagttacagcgatacccaagaagtaatgtaatgaccccaagtccttcataagcaaattttttactaatggagggatatgatagtca |
975 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| | |||||| |||||||||||||||||| |
|
|
| T |
1853135 |
tccacctgtatgatgagttacagcgatacccaagaagtaatgtaatgaccccaaatccttcat-agcaaattctgtactaa-ggagggatatgatagtca |
1853038 |
T |
|
| Q |
976 |
tgcgaataggcatcagaggaggttgtcag |
1004 |
Q |
| |
|
|||||| | ||||||||||||| |||||| |
|
|
| T |
1853037 |
tgcgaaga-gcatcagaggaggctgtcag |
1853010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 7 - 176
Target Start/End: Complemental strand, 36650562 - 36650390
Alignment:
| Q |
7 |
atataattgcttgcttatttcattaacaggattgtggttatatacaccaattacaatagttgacttagcctataattatggtggtaatcgaaactaatta |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36650562 |
atataattgcttccttatttcattaacaggattgtggttatatacaccaattacaatagttgacttagcctataattatggtggtaaccgaaactaatta |
36650463 |
T |
|
| Q |
107 |
actcagtatcatacta-tga--gatatgctacgtattgctatttacatatactctaacacacccccgcagtcg |
176 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36650462 |
actcagtatcatactactgattgatatgctacttattgctatttacatatactctaacacacccccgcagtcg |
36650390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 1849621 - 1849471
Alignment:
| Q |
7 |
atataattgcttgcttatttcattaacaggattgtggttatatacaccaattacaatagttgacttagcctataattatggtggtaatcgaaactaatta |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1849621 |
atataattgcttccttatttcattaacaggattgtggttatatacaccaattacaatagttgacttagcctataattatggtggtaaccgaaactaatta |
1849522 |
T |
|
| Q |
107 |
actcagtatcatacta-tga--gatatgctacgtattgctatttacatata |
154 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| |||||||||||||||||| |
|
|
| T |
1849521 |
actcagtatcatactactgattgatatgctacttattgctatttacatata |
1849471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 1854128 - 1853978
Alignment:
| Q |
7 |
atataattgcttgcttatttcattaacaggattgtggttatatacaccaattacaatagttgacttagcctataattatggtggtaatcgaaactaatta |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1854128 |
atataattgcttccttatttcattaacaggattgtggttatatacaccaattacaatagttgacttagcctataattatggtggtaaccgaaactaatta |
1854029 |
T |
|
| Q |
107 |
actcagtatcatacta-tga--gatatgctacgtattgctatttacatata |
154 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| |||||||||||||||||| |
|
|
| T |
1854028 |
actcagtatcatactactgattgatatgctacttattgctatttacatata |
1853978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 36646058 - 36645909
Alignment:
| Q |
7 |
atataattgcttgcttatttcattaacaggattgtggttatatacaccaattacaatagttgacttagcctataattatggtggtaatcgaaactaatta |
106 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
36646058 |
atataattgcttccttatttcattaacaggattgtggttatatacaccaattacaatagttgacttagcc-ataattatggtggtaaccgaaactaatta |
36645960 |
T |
|
| Q |
107 |
actcagtatcatacta-tga--gatatgctacgtattgctatttacatata |
154 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| |||||||||||||||||| |
|
|
| T |
36645959 |
actcagtatcatactactgattgatatgctacttattgctatttacatata |
36645909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 205 - 539
Target Start/End: Original strand, 19336797 - 19337131
Alignment:
| Q |
205 |
ttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacattatcacaataca |
304 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || | |||||||| || | || |||||||||||||| ||||| |||||||||||||| | |
|
|
| T |
19336797 |
ttttcgcgaacaaaatgaatatccatctcaatatgttttgttctttgatgttggaccgggttaccagagagataaattgcactgacattatcacaataaa |
19336896 |
T |
|
| Q |
305 |
ccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaaccacattggcaacgcctcggtattctgcctc |
404 |
Q |
| |
|
||| | | || || |||||||||| || | ||||| |||||||| |||| ||||||||| ||| | |||| ||||||||| || |||||||| || || |
|
|
| T |
19336897 |
ccatggttgctttgtgaataggacactgtaattcaaggagaagattgcgtagccaacatgattcagagaccaaattggcaactccacggtattcggcttc |
19336996 |
T |
|
| Q |
405 |
cgcactagaacgtgacaaagtagctttccgtttggcggaccaagaaattaaattatcaccaagaaacacacaataaccagatgtagagcgtagggtatcc |
504 |
Q |
| |
|
|||||||| || || || || | | ||||| | |||||||| || | ||||| |||||||| ||||| || ||||| ||||| ||| ||| || |
|
|
| T |
19336997 |
ggcactagatcgggataaggtgggctgtcgtttagatgaccaagatatcaggttatctccaagaaagacacagtagccagaagtagaccgtctggtgtcg |
19337096 |
T |
|
| Q |
505 |
ggacacccaccccaatcagcatctgtataagaaat |
539 |
Q |
| |
|
|| ||||||||||||| |||||||||||| ||||| |
|
|
| T |
19337097 |
gggcacccaccccaataagcatctgtatatgaaat |
19337131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 184 - 527
Target Start/End: Complemental strand, 45181943 - 45181600
Alignment:
| Q |
184 |
cgaacttccccacgagtaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcg |
283 |
Q |
| |
|
||||||| ||||| | |||||||||||| | ||| ||||| ||||| || || ||||| || || ||||| ||||| | ||| ||||| ||||| || | |
|
|
| T |
45181943 |
cgaacttgaccacgggcaactttttcgcggataaagtgaatgtccatttcaatgtgtttggtccgttgatgctgaacgggattaccagatagatatattg |
45181844 |
T |
|
| Q |
284 |
cactaacattatcacaatacaccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaaccacattggc |
383 |
Q |
| |
|
|||| || ||||||||||| || | | |||| ||| | || |||||||| || ||||| || | ||||||||||||||| || ||| | |||||||| || |
|
|
| T |
45181843 |
cactgacgttatcacaataaactatggtagctttttggatcggacaatgtagttcaaggagtaaattacgtaaccaacaagattcagataccacatttgc |
45181744 |
T |
|
| Q |
384 |
aacgcctcggtattctgcctccgcactagaacgtgacaaagtagctttccgtttggcggaccaagaaattaaattatcaccaagaaacacacaataacca |
483 |
Q |
| |
|
||| || || ||||| ||||| |||||||| || || || || | || ||||| | |||||| || | ||| || |||||||||||||||||||||||| |
|
|
| T |
45181743 |
aacaccacgatattcagcctcagcactagagcgggataacgtgggttggcgtttcgaggaccatgagagtaagttgtcaccaagaaacacacaataacca |
45181644 |
T |
|
| Q |
484 |
gatgtagagcgtagggtatccggacacccaccccaatcagcatc |
527 |
Q |
| |
|
|| || |||||| || || || || ||||||||||||||||| |
|
|
| T |
45181643 |
gaggtggagcgtctagtgtctgggcagccaccccaatcagcatc |
45181600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 181 - 413
Target Start/End: Original strand, 16656765 - 16656997
Alignment:
| Q |
181 |
actcgaacttccccacgagtaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaa |
280 |
Q |
| |
|
|||||||||| || |||| |||||||| ||||| ||||||||||||||||| || ||||| || | ||||||||||| | ||| || ||||| || | |
|
|
| T |
16656765 |
actcgaacttgaccccgagctactttttcacgaacgaaatgaatatccatctcaatgtgtttcgtttgttgatgttgaaccggattacccgagaggtaga |
16656864 |
T |
|
| Q |
281 |
tcgcactaacattatcacaatacaccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaaccacatt |
380 |
Q |
| |
|
| ||||| || ||||||||||| |||||| ||||||| ||||||| || || ||||| || | |||||| | |||||| || || || | |||||||| |
|
|
| T |
16656865 |
tagcactgacgttatcacaatagaccaaggtagccttatgaatagggcagtgtagctcgagcaaaagatttcttaaccagcaggattctgagaccacatt |
16656964 |
T |
|
| Q |
381 |
ggcaacgcctcggtattctgcctccgcactaga |
413 |
Q |
| |
|
||||| ||| || |||||||| || |||||||| |
|
|
| T |
16656965 |
ggcaatgccacgatattctgcttcagcactaga |
16656997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 268 - 881
Target Start/End: Complemental strand, 1668343 - 1667730
Alignment:
| Q |
268 |
ccagagagataaatcgcactaacattatcacaatacaccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgact |
367 |
Q |
| |
|
||||| ||||| || |||||||| |||||| | ||||||| |||| || | || |||||||| || || ||||| || ||||||||||||||||||| |
|
|
| T |
1668343 |
ccagaaagatatatggcactaacgttatcatagtacaccatagtagctttgtgtatcggacaatgtagttcgagaagtaggttacgtaaccaacatgact |
1668244 |
T |
|
| Q |
368 |
caaaaaccacattggcaacgcctcggtattctgcctccgcactagaacgtgacaaagtagctttccgtttggcggaccaagaaattaaattatcaccaag |
467 |
Q |
| |
|
|| | || | ||||||||| || || ||||| || || ||||| || | ||||| || | || ||||||| ||||| || | ||| || || ||||| |
|
|
| T |
1668243 |
cagagacgatattggcaactccacgatattcagcttcagcactggatcaagacaatgtgggttgacgtttggacgaccatgatagtaagttctctccaag |
1668144 |
T |
|
| Q |
468 |
aaacacacaataaccagatgtagagcgtagggtatccggacacccaccccaatcagcatctgtataagaaatgaaagtggatgtggaggatggatagaga |
567 |
Q |
| |
|
||| ||||||||||| || ||||| ||| || || ||||| || ||||||||||||||||| ||||| || || | | ||||| |||||||| ||| |
|
|
| T |
1668143 |
aaaaacacaataaccggaggtagatcgtctagtgtcgggacatcctccccaatcagcatctgtgtaagagatcaacgatgtagtggatgatggataaaga |
1668044 |
T |
|
| Q |
568 |
tgaagaccatgatccagagtaccctgaatgtagcgcacaatgcgcttgagagcatgcatatgttcttcccttgggtcatgcatgaataaacacacctgtt |
667 |
Q |
| |
|
|| | ||||| | ||| || |||||||| |||| |||||| |||| ||||| || | ||| | || |||||||| || | ||| | ||||| |
|
|
| T |
1668043 |
tgtaaaccatagtgactagttccttgaatgtaacgcaaaatgcgtcgaagagagtgcatgtgattgtccatgggatcatgcataaaaagacatatctgtt |
1667944 |
T |
|
| Q |
668 |
gcacatcataagcaatatcaggtctcgtgaaagtgaggtattgaagagcacctacaaggcttcgataatgagatggatctgcatatggtgcgctggaatt |
767 |
Q |
| |
|
| || |||| | ||| || ||||||||||||||||||||||| |||||||| ||||||| || || ||||| ||| |||| || | ||| | || |
|
|
| T |
1667943 |
gtaccgcatatgtaatgtcgggtctcgtgaaagtgaggtattggagagcaccggcaaggctacggtataatgatgggtcttcatagggagtgctagtctt |
1667844 |
T |
|
| Q |
768 |
aacactaagcttcggtttagtgtcaaccggagtagaagatgatttacatgctgccatgccagcccgttcaatgatctcagctgcatactttcgttgagat |
867 |
Q |
| |
|
| | ||||||||||||||||||||||| | ||| | | ||||||| |||| || |||||| || || | || || ||| ||||||||||| |||||| |
|
|
| T |
1667843 |
agcgctaagcttcggtttagtgtcaactgaagtgggacatgatttgcatgatgacatgcctgctcgcttaagaatttcatctgcatactttttctgagat |
1667744 |
T |
|
| Q |
868 |
aagaacaatccacc |
881 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
1667743 |
aagaacaaaccacc |
1667730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 463 - 569
Target Start/End: Complemental strand, 18393259 - 18393153
Alignment:
| Q |
463 |
ccaagaaacacacaataaccagatgtagagcgtagggtatccggacacccaccccaatcagcatctgtataagaaatgaaagtggatgtggaggatggat |
562 |
Q |
| |
|
||||||||||||||||||||||| || || ||| || | || ||||| |||||||||||||||||||||||||| || | ||| || || ||||||| |
|
|
| T |
18393259 |
ccaagaaacacacaataaccagaggtggaacgtctagtgttggggcaccctccccaatcagcatctgtataagaaattaaggaggaagtagatgatggat |
18393160 |
T |
|
| Q |
563 |
agagatg |
569 |
Q |
| |
|
| ||||| |
|
|
| T |
18393159 |
aaagatg |
18393153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 646 - 734
Target Start/End: Complemental strand, 45181481 - 45181393
Alignment:
| Q |
646 |
tgcatgaataaacacacctgttgcacatcataagcaatatcaggtctcgtgaaagtgaggtattgaagagcacctacaaggcttcgata |
734 |
Q |
| |
|
||||||||||| || | |||||| || |||| | |||||| ||||| || |||||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
45181481 |
tgcatgaataagcatatctgttggaccgcatatgaaatatcgggtcttgtaaaagtgagatattgaagagcacctgcaaggctgcgata |
45181393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 262
Target Start/End: Original strand, 47249459 - 47249541
Alignment:
| Q |
180 |
gactcgaacttccccacgagtaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactg |
262 |
Q |
| |
|
|||||| |||| ||||| || ||||| || || |||||||| |||||||||||||| ||||| ||||| |||||||| |||| |
|
|
| T |
47249459 |
gactcgtacttggccacgggtgactttctcacgcacaaaatgtatatccatctcgatgtgtttggtgcgttgatgttggactg |
47249541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 875396 - 875465
Alignment:
| Q |
193 |
ccacgagtaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactg |
262 |
Q |
| |
|
||||||| |||||||||||| ||||| || |||||||| | ||| ||||| || || ||||||||||||| |
|
|
| T |
875396 |
ccacgagcaactttttcgcgcacaaagtgtatatccattttgatgtgtttggtacgttgatgttgaactg |
875465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 705; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 176 - 1004
Target Start/End: Complemental strand, 7084946 - 7084121
Alignment:
| Q |
176 |
gtaggactcgaacttccccacgagtaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagag |
275 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
7084946 |
gtaggactcgaacttccccacgagcaactttttcgcgaacagaatgaatatccatctcgatatgtttagtgcgctgatgttgaaccggatttccagagag |
7084847 |
T |
|
| Q |
276 |
ataaatcgcactaacattatcacaatacaccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaacc |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7084846 |
ataaatcgcactaacattatcacaatacaccaaactagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcagaaacc |
7084747 |
T |
|
| Q |
376 |
acattggcaacgcctcggtattctgcctccgcactagaacgtgacaaagtagctttccgtttggcggaccaagaaattaaattatcaccaagaaacacac |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7084746 |
acattggcaacgcctcggtattctgcctccgcactagaacgtgacaaagtagcttgccgtttggcggaccaagaaattaaattatcaccaagaaacacac |
7084647 |
T |
|
| Q |
476 |
aataaccagatgtagagcgtagggtatccggacacccaccccaatcagcatctgtataagaaatgaaagtggatgtggaggatggatagagatgaagacc |
575 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |
|
|
| T |
7084646 |
aataaccagatgtagagcgtcgggtatccggacacccaccccaatcagcatctgtataagaaatgagagtggatgtggaggatggatagagatgcaaacc |
7084547 |
T |
|
| Q |
576 |
atgatccagagtaccctgaatgtagcgcacaatgcgcttgagagcatgcatatgttcttcccttgggtcatgcatgaataaacacacctgttgcacatca |
675 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7084546 |
atgatccagagtaccctgaatgtagcgcacaatgcgcttgagagcatgcatatgttcttcccttgggtcatgcatgaataaacacacctgttgcacagca |
7084447 |
T |
|
| Q |
676 |
taagcaatatcaggtctcgtgaaagtgaggtattgaagagcacctacaaggcttcgataatgagatggatctgcatatggtgcgctggaattaacactaa |
775 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
7084446 |
taagcaatatcaggtctcgtaaaagtgaggtattgaagagcacctgcaaggcttcgataatgagatggatctgcatgtggtgcgctggaattagcactaa |
7084347 |
T |
|
| Q |
776 |
gcttcggtttagtgtcaaccggagtagaagatgatttacatgctgccatgccagcccgttcaatgatctcagctgcatactttcgttgagataagaacaa |
875 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
7084346 |
gcttcggtttagtgtcaaccggagtagaagatgatttacatgctgccatgccagcccgttcaatgatttcagctgcatactttcgttgagataagaataa |
7084247 |
T |
|
| Q |
876 |
tccacctgtatgatgagttacagcgatacccaagaagtaatgtaatgaccccaagtccttcataagcaaattttttactaatggagggatatgatagtca |
975 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| | |||||| |||||||||||||||||| |
|
|
| T |
7084246 |
tccacctgtatgatgagttacagcgatacccaagaagtaatgtaatgaccccaaatccttcat-agcgaattctgtactaa-ggagggatatgatagtca |
7084149 |
T |
|
| Q |
976 |
tgcgaataggcatcagaggaggttgtcag |
1004 |
Q |
| |
|
||||| | ||||||||||||| |||||| |
|
|
| T |
7084148 |
cgcgaaga-gcatcagaggaggctgtcag |
7084121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 7080721 - 7080574
Alignment:
| Q |
7 |
atataattgcttgcttatttcattaacaggattgtggttatatacaccaattacaatagttgacttagcctataattatggtggtaatcgaaactaatta |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
7080721 |
atataattgcttccttatttcattaacaggattgtggttatatacaccaattacaatagttgacttagcttataattatggtggtaaccgaaactaatta |
7080622 |
T |
|
| Q |
107 |
actcagtatcatactatgagatatgctacgtattgctatttacatata |
154 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
7080621 |
actcagtatcatactacgagatatgctacttattgctatttacatata |
7080574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 7085236 - 7085089
Alignment:
| Q |
7 |
atataattgcttgcttatttcattaacaggattgtggttatatacaccaattacaatagttgacttagcctataattatggtggtaatcgaaactaatta |
106 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
7085236 |
atataattgcttccttatttcattaacaggattgtggttatatacaccaattacaataattgacttagcttataattatggtggtaaccgaaactaatta |
7085137 |
T |
|
| Q |
107 |
actcagtatcatactatgagatatgctacgtattgctatttacatata |
154 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
7085136 |
actcagtatcatactacgagatatgctacttattgctatttacatata |
7085089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 262; Significance: 1e-145; HSPs: 5)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 679 - 1004
Target Start/End: Complemental strand, 22163 - 21841
Alignment:
| Q |
679 |
gcaatatcaggtctcgtgaaagtgaggtattgaagagcacctacaaggcttcgataatgagatggatctgcatatggtgcgctggaattaacactaagct |
778 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22163 |
gcaatatcaggtctcgtaaaagtgaggtattgaagagcacctgcaaggcttcgataatgagatggatctgcatatggtgcgctggaattagcactaagct |
22064 |
T |
|
| Q |
779 |
tcggtttagtgtcaaccggagtagaagatgatttacatgctgccatgccagcccgttcaatgatctcagctgcatactttcgttgagataagaacaatcc |
878 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22063 |
tcggtttagtgtcaaccggagtagaagatgatttacatgctgccatgccatcccgttcaatgatctcagctgcatactttcgttgagataagaacaatcc |
21964 |
T |
|
| Q |
879 |
acctgtatgatgagttacagcgatacccaagaagtaatgtaatgaccccaagtccttcataagcaaattttttactaatggagggatatgatagtcatgc |
978 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||| | |||||| ||||||||||||||||||||| |
|
|
| T |
21963 |
acctgtatgatgagtttcagcgatacccaagaagtaatgtaatgaccccaaatccttcat-agcaaattctgtactaa-ggagggatatgatagtcatgc |
21866 |
T |
|
| Q |
979 |
gaataggcatcagaggaggttgtcag |
1004 |
Q |
| |
|
||| | ||||||||||||| |||||| |
|
|
| T |
21865 |
gaaga-gcatcagaggaggctgtcag |
21841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169; HSP #2
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 176 - 369
Target Start/End: Complemental strand, 22368 - 22175
Alignment:
| Q |
176 |
gtaggactcgaacttccccacgagtaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagag |
275 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
22368 |
gtaggactcgaacttccccacgagcaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaaccggatttccagagag |
22269 |
T |
|
| Q |
276 |
ataaatcgcactaacattatcacaatacaccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactca |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22268 |
ataaatcgcactaacattatcacaatacaccaaactagcctttcgaataggacaatgaagctcaagaagaagattacataaccaacatgactca |
22175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 12935 - 12788
Alignment:
| Q |
7 |
atataattgcttgcttatttcattaacaggattgtggttatatacaccaattacaatagttgacttagcctataattatggtggtaatcgaaactaatta |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12935 |
atataattgcttgcttatttcattaacaggattgtggttatatacaccaattacaatagttgacttagcctataattatggtggtaaccgaaactaatta |
12836 |
T |
|
| Q |
107 |
actcagtatcatactatgagatatgctacgtattgctatttacatata |
154 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
12835 |
actcagtatcatactacgagatatgctacttattgctatttacatata |
12788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169; HSP #4
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 18453 - 18306
Alignment:
| Q |
7 |
atataattgcttgcttatttcattaacaggattgtggttatatacaccaattacaatagttgacttagcctataattatggtggtaatcgaaactaatta |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18453 |
atataattgcttccttatttcattaacaggattgtggttatatacaccaattacaatagttgacttagcctataattatggtggtaaccgaaactaatta |
18354 |
T |
|
| Q |
107 |
actcagtatcatactatgagatatgctacgtattgctatttacatata |
154 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
18353 |
actcagtatcatactacgagatatgctacttattgctatttacatata |
18306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169; HSP #5
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 22658 - 22511
Alignment:
| Q |
7 |
atataattgcttgcttatttcattaacaggattgtggttatatacaccaattacaatagttgacttagcctataattatggtggtaatcgaaactaatta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22658 |
atataattgcttgcttatttcattaacaagattgtggttatatacaccaattacaatagttgacttagcctataattatggtggtaaccgaaactaatta |
22559 |
T |
|
| Q |
107 |
actcagtatcatactatgagatatgctacgtattgctatttacatata |
154 |
Q |
| |
|
|||||||||||||||| || ||||||||| |||||||||||||||||| |
|
|
| T |
22558 |
actcagtatcatactacgaaatatgctacttattgctatttacatata |
22511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 8e-39; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 205 - 539
Target Start/End: Complemental strand, 3378563 - 3378229
Alignment:
| Q |
205 |
ttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacattatcacaataca |
304 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || | |||||||| || | | |||||||||||||| ||||| |||||||||||||| | |
|
|
| T |
3378563 |
ttttcgcgaacaaaatgaatatccatctcaatatgttttgttctttgatgttggaccgggtaaccagagagataaattgcactgacattatcacaataaa |
3378464 |
T |
|
| Q |
305 |
ccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaaccacattggcaacgcctcggtattctgcctc |
404 |
Q |
| |
|
||| | | || || |||||||||| || | ||||| |||||||| |||| ||||||||| ||| | |||||||||||||| || |||||||| || || |
|
|
| T |
3378463 |
ccatggttgctttgtgaataggacactgtaattcaaggagaagattgcgtagccaacatgattcagagaccacattggcaactccacggtattcggcttc |
3378364 |
T |
|
| Q |
405 |
cgcactagaacgtgacaaagtagctttccgtttggcggaccaagaaattaaattatcaccaagaaacacacaataaccagatgtagagcgtagggtatcc |
504 |
Q |
| |
|
|||||||| || || || || | || ||||| | |||||||| || | ||||| |||||||| ||||| || ||||| ||||| ||| ||| || |
|
|
| T |
3378363 |
ggcactagatcgggataaggtgggttgtcgtttagatgaccaagatatcatgttatctccaagaaagacacagtagccagaagtagaccgtctggtgtcg |
3378264 |
T |
|
| Q |
505 |
ggacacccaccccaatcagcatctgtataagaaat |
539 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||| |
|
|
| T |
3378263 |
gagcacccaccccaatcagcatctgtatatgaaat |
3378229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 205 - 524
Target Start/End: Original strand, 40270509 - 40270828
Alignment:
| Q |
205 |
ttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacattatcacaataca |
304 |
Q |
| |
|
||||| |||||||||||||| | |||||| ||||||||| |||||||||| || || | ||| ||||| ||||| || ||||||||||| ||| |||||| |
|
|
| T |
40270509 |
ttttcccgaacaaaatgaatgttcatctcaatatgtttaatgcgctgatgctgcacaggattaccagatagatagatggcactaacattgtcataataca |
40270608 |
T |
|
| Q |
305 |
ccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaaccacattggcaacgcctcggtattctgcctc |
404 |
Q |
| |
|
|||| | |||| |||||||| |||| || || ||||||||||| || | |||||| || ||| | || ||||| ||||| |||| ||||| || || |
|
|
| T |
40270609 |
ccaaagtggcctgatgaataggaaaatggagttccagaagaagattgcgaatccaacacgattcagagacaacatttgcaacacctctatattcagcttc |
40270708 |
T |
|
| Q |
405 |
cgcactagaacgtgacaaagtagctttccgtttggcggaccaagaaattaaattatcaccaagaaacacacaataaccagatgtagagcgtagggtatcc |
504 |
Q |
| |
|
||||||||||| || | ||| | | |||||||| ||||||||||| | || ||||| ||||| |||||||||||||||||||| ||| ||| || |
|
|
| T |
40270709 |
agcactagaacgggagagagttggctgccgtttggaagaccaagaaataaggttgtcacctagaaaaacacaataaccagatgtagaacgtctggtgtca |
40270808 |
T |
|
| Q |
505 |
ggacacccaccccaatcagc |
524 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
40270809 |
ggacatccaccccaatcagc |
40270828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 205 - 539
Target Start/End: Original strand, 38614225 - 38614559
Alignment:
| Q |
205 |
ttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacattatcacaataca |
304 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||| || | |||||||| | | || ||||||||||||| ||| | |||||||||||||| | |
|
|
| T |
38614225 |
ttttcgcgaacaaaatgaatattcatctcaatatgttttgttctttgatgttggatcgggttaccagagagataaaatgcattgacattatcacaataaa |
38614324 |
T |
|
| Q |
305 |
ccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaaccacattggcaacgcctcggtattctgcctc |
404 |
Q |
| |
|
||| | | || || |||| ||||| || | ||||| |||||||| |||| ||||||||| ||||| || ||||||||||| || |||||||| || || |
|
|
| T |
38614325 |
ccatggttgctttgtgaattggacactgtaattcaaggagaagattgcgtagccaacatgattcaaagactacattggcaactccacggtattcggcttc |
38614424 |
T |
|
| Q |
405 |
cgcactagaacgtgacaaagtagctttccgtttggcggaccaagaaattaaattatcaccaagaaacacacaataaccagatgtagagcgtagggtatcc |
504 |
Q |
| |
|
|||||||| || || || || | | |||||| | |||||||| || | ||||| |||||||| ||||| || ||||| ||||| ||| || || |
|
|
| T |
38614425 |
ggcactagatcgggataaggtgggctgccgtttagatgaccaagatatcaggttatctccaagaaagacacagtagccagaagtagaccgtctagtgtcg |
38614524 |
T |
|
| Q |
505 |
ggacacccaccccaatcagcatctgtataagaaat |
539 |
Q |
| |
|
|| ||||||||||||||| |||||||||| ||||| |
|
|
| T |
38614525 |
gggcacccaccccaatcaacatctgtatatgaaat |
38614559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 193 - 307
Target Start/End: Complemental strand, 31343215 - 31343101
Alignment:
| Q |
193 |
ccacgagtaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacat |
292 |
Q |
| |
|
||||||| |||||||| |||||||||||||| |||||||| |||||||| || ||||||||||| || | ||| || || ||||| || ||||| |||| |
|
|
| T |
31343215 |
ccacgagctactttttcccgaacaaaatgaatgtccatctcaatatgtttggtacgctgatgttgcacaggattacccgatagatatatggcactgacat |
31343116 |
T |
|
| Q |
293 |
tatcacaatacacca |
307 |
Q |
| |
|
| |||||||| |||| |
|
|
| T |
31343115 |
tgtcacaatatacca |
31343101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 23584154 - 23584050
Alignment:
| Q |
211 |
cgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacattatcacaatacaccaagc |
310 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||| ||| | |||||| |||| ||| | ||| || || || ||||||||||||||||||||||||||| |
|
|
| T |
23584154 |
cgaacaaagtgaatgtccatctcaatatgtttagcgcgtt-atgttgtactggattacgagaaaggtagatggcactaacattatcacaatacaccaagg |
23584056 |
T |
|
| Q |
311 |
tagcct |
316 |
Q |
| |
|
|||||| |
|
|
| T |
23584055 |
tagcct |
23584050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 314
Target Start/End: Original strand, 7231710 - 7231823
Alignment:
| Q |
201 |
aactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacattatcacaa |
300 |
Q |
| |
|
||||||||| |||||||| ||||| || || || || || |||||||| ||||||||||| ||| |||||||| || || ||||||| |||||||||| |
|
|
| T |
7231710 |
aactttttcacgaacaaagtgaatgtctatttcaatgtgcttagtgcgttgatgttgaacatgattaccagagaggtatattgcactaatattatcacaa |
7231809 |
T |
|
| Q |
301 |
tacaccaagctagc |
314 |
Q |
| |
|
| ||| ||| |||| |
|
|
| T |
7231810 |
tgcactaaggtagc |
7231823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 457 - 533
Target Start/End: Complemental strand, 23583909 - 23583833
Alignment:
| Q |
457 |
ttatcaccaagaaacacacaataaccagatgtagagcgtagggtatccggacacccaccccaatcagcatctgtata |
533 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||||| || |||| || ||||| |||||| |||||||||| ||||| |
|
|
| T |
23583909 |
ttatcaccaagaaatacacaatagccagaagtagaacgacgggtgtcaggacatccacccgaatcagcatcagtata |
23583833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 4193459 - 4193500
Alignment:
| Q |
201 |
aactttttcgcgaacaaaatgaatatccatctcgatatgttt |
242 |
Q |
| |
|
||||||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
4193459 |
aactttttctcgaacaaagtggatatccatctcgatatgttt |
4193500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 2e-33; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 193 - 530
Target Start/End: Original strand, 7324366 - 7324703
Alignment:
| Q |
193 |
ccacgagtaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacat |
292 |
Q |
| |
|
||||||| |||||||| ||||| || ||||| |||||||| || ||||||||||| ||||||||||| | || ||||| | ||| ||||||||||||| |
|
|
| T |
7324366 |
ccacgagccactttttcacgaacgaagtgaatgtccatctcaatgtgtttagtgcgttgatgttgaacagggttcccagataaatatatcgcactaacat |
7324465 |
T |
|
| Q |
293 |
tatcacaatacaccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaaccacattggcaacgcctcg |
392 |
Q |
| |
|
| ||||| || |||| | ||||||| ||||||||||| | ||| | ||| || || ||||||||||| |||||| | || ||||||||||| ||||| |
|
|
| T |
7324466 |
tgtcacagtagaccatggtagccttgtagataggacaatgtaactccaaaagtaggttgcgtaaccaacaagactcagatacgacattggcaacacctcg |
7324565 |
T |
|
| Q |
393 |
gtattctgcctccgcactagaacgtgacaaagtagctttccgtttggcggaccaagaaattaaattatcaccaagaaacacacaataaccagatgtagag |
492 |
Q |
| |
|
|||||| || || |||||||| || || || || | || ||||||| ||||| || | || ||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
7324566 |
gtattcggcttcagcactagagcgagataatgtgggttggcgtttggaagaccatgagagtagattgtcaccaagaaatacacaataaccagacgtagat |
7324665 |
T |
|
| Q |
493 |
cgtagggtatccggacacccaccccaatcagcatctgt |
530 |
Q |
| |
|
| |||||| ||||| || |||||||| |||||||| |
|
|
| T |
7324666 |
ctcctggtatctggacatccgccccaatcggcatctgt |
7324703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 205 - 308
Target Start/End: Original strand, 9932253 - 9932356
Alignment:
| Q |
205 |
ttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacattatcacaataca |
304 |
Q |
| |
|
||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| |||| ||| ||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
9932253 |
ttttctcgaacaaagtgaatgtccatctcaatatgtttagtgcgctgatgttgtactggattaccagaaaggtaaatggcactaacattatcacaataca |
9932352 |
T |
|
| Q |
305 |
ccaa |
308 |
Q |
| |
|
|||| |
|
|
| T |
9932353 |
ccaa |
9932356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 211 - 313
Target Start/End: Complemental strand, 44387506 - 44387404
Alignment:
| Q |
211 |
cgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacattatcacaatacaccaagc |
310 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||| || ||||| || |||| ||| ||||| || || || |||||||||||||||||||||||||| | |
|
|
| T |
44387506 |
cgaacaaagtgaatgtccatctcaatatgtttagtacgttgatgctgcactggattaccagaaaggtagatggcactaacattatcacaatacaccaaac |
44387407 |
T |
|
| Q |
311 |
tag |
313 |
Q |
| |
|
||| |
|
|
| T |
44387406 |
tag |
44387404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 460 - 533
Target Start/End: Original strand, 9932508 - 9932581
Alignment:
| Q |
460 |
tcaccaagaaacacacaataaccagatgtagagcgtagggtatccggacacccaccccaatcagcatctgtata |
533 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| || |||| || ||||| ||||||||||||||||| ||||| |
|
|
| T |
9932508 |
tcaccaagaaacacacaatagccagaggtagaacgacgggtgtctggacatccaccccaatcagcatcagtata |
9932581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 688 - 734
Target Start/End: Complemental strand, 16092220 - 16092174
Alignment:
| Q |
688 |
ggtctcgtgaaagtgaggtattgaagagcacctacaaggcttcgata |
734 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
16092220 |
ggtctcgtgaaagtgaggtattggagagcaccgacaaggctacgata |
16092174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 283 - 413
Target Start/End: Complemental strand, 24210066 - 24209936
Alignment:
| Q |
283 |
gcactaacattatcacaatacaccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaaccacattgg |
382 |
Q |
| |
|
||||||||||| |||||||||||||| |||||| |||||||| | || ||||| || | |||||||| | ||||||||||||| | || ||||| | |
|
|
| T |
24210066 |
gcactaacattgtcacaatacaccaaagtagcctgaggaataggaaagtggagctccagtaagagattacgaagccaacatgactcagacacaacattag |
24209967 |
T |
|
| Q |
383 |
caacgcctcggtattctgcctccgcactaga |
413 |
Q |
| |
|
|||| |||| ||||| || || |||||||| |
|
|
| T |
24209966 |
caacacctctatattccgcttcagcactaga |
24209936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 433 - 527
Target Start/End: Complemental strand, 44387284 - 44387190
Alignment:
| Q |
433 |
cgtttggcggaccaagaaattaaattatcaccaagaaacacacaataaccagatgtagagcgtagggtatccggacacccaccccaatcagcatc |
527 |
Q |
| |
|
||||||| ||||||||||| | || |||||||||||||||||||| |||| || || || |||| || ||||| ||||||||||||||||| |
|
|
| T |
44387284 |
cgtttggaagaccaagaaatgaggttgtcaccaagaaacacacaatagccagcggtcgaacgacgggtgtcaggacatccaccccaatcagcatc |
44387190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 283 - 413
Target Start/End: Complemental strand, 45029843 - 45029713
Alignment:
| Q |
283 |
gcactaacattatcacaatacaccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaaccacattgg |
382 |
Q |
| |
|
||||||||||| |||||||||||||| |||||| |||||||| | || ||||| || | |||||||| | ||||||||||||| | || ||||| | |
|
|
| T |
45029843 |
gcactaacattgtcacaatacaccaaagtagcctgaggaataggaaagtggagctccagtaagagattacgaagccaacatgactcagacacaacattag |
45029744 |
T |
|
| Q |
383 |
caacgcctcggtattctgcctccgcactaga |
413 |
Q |
| |
|
|||| |||| ||||| || || |||||||| |
|
|
| T |
45029743 |
caacacctctatattccgcttcagcactaga |
45029713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 283 - 413
Target Start/End: Complemental strand, 45034694 - 45034564
Alignment:
| Q |
283 |
gcactaacattatcacaatacaccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaaccacattgg |
382 |
Q |
| |
|
||||||||||| |||||||||||||| |||||| |||||||| | || ||||| || | |||||||| | ||||||||||||| | || ||||| | |
|
|
| T |
45034694 |
gcactaacattgtcacaatacaccaaagtagcctgaggaataggaaagtggagctccagtaagagattacgaagccaacatgactcagacacaacattag |
45034595 |
T |
|
| Q |
383 |
caacgcctcggtattctgcctccgcactaga |
413 |
Q |
| |
|
|||| |||| ||||| || || |||||||| |
|
|
| T |
45034594 |
caacacctctatattccgcttcagcactaga |
45034564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 3e-32; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 205 - 524
Target Start/End: Complemental strand, 16594797 - 16594478
Alignment:
| Q |
205 |
ttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacattatcacaataca |
304 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||| |||||||||||||| || || | ||| ||||| ||||| || ||||||||||| |||||||||| |
|
|
| T |
16594797 |
ttttcccgaacaaaatgaatgtccatctcaatatgcttagtgcgctgatgctgcacaggattaccagatagatagatggcactaacattgtcacaataca |
16594698 |
T |
|
| Q |
305 |
ccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaaccacattggcaacgcctcggtattctgcctc |
404 |
Q |
| |
|
|||| | |||| |||||||| |||| || || || |||||||| || | |||||| || || |||| ||||| ||||| || | ||||| || || |
|
|
| T |
16594697 |
ccaaagtggcctcaggaataggaaaatggagttctaggagaagattgcgaatccaacacgattcggaaacaacatttgcaactcccctatattcggcttc |
16594598 |
T |
|
| Q |
405 |
cgcactagaacgtgacaaagtagctttccgtttggcggaccaagaaattaaattatcaccaagaaacacacaataaccagatgtagagcgtagggtatcc |
504 |
Q |
| |
|
||||||||||| || | ||||| || || ||||| ||||||||||| | || ||||| ||||| ||||| |||||||||||||| ||| || || |
|
|
| T |
16594597 |
agcactagaacgggagagagtaggttgccttttggaagaccaagaaataaggttgtcacctagaaaaacacagtaaccagatgtagaccgtctagtgtca |
16594498 |
T |
|
| Q |
505 |
ggacacccaccccaatcagc |
524 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
16594497 |
ggacatccaccccaatcagc |
16594478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 193 - 416
Target Start/End: Original strand, 26643667 - 26643890
Alignment:
| Q |
193 |
ccacgagtaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacat |
292 |
Q |
| |
|
||||||| |||||||| |||| || ||||||||||||||||| ||||||||||| |||||||||| | || ||||| | ||| ||||||||||||| |
|
|
| T |
26643667 |
ccacgagccactttttcatgaacgaagtgaatatccatctcgatgtgtttagtgcgttgatgttgaaaagggttcccagataaatatatcgcactaacat |
26643766 |
T |
|
| Q |
293 |
tatcacaatacaccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaaccacattggcaacgcctcg |
392 |
Q |
| |
|
| ||||| || |||| | ||||||| ||||||||||| | ||| | ||| || || ||||||||||| |||||| | || ||||||||||| |||| |
|
|
| T |
26643767 |
tgtcacagtagaccatggtagccttgtatataggacaatgtaactccaaaagtaggttgcgtaaccaacaagactcagatacgacattggcaacacctca |
26643866 |
T |
|
| Q |
393 |
gtattctgcctccgcactagaacg |
416 |
Q |
| |
|
|||||| || || ||||||||||| |
|
|
| T |
26643867 |
gtattcggcttcagcactagaacg |
26643890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 193 - 416
Target Start/End: Original strand, 26749633 - 26749856
Alignment:
| Q |
193 |
ccacgagtaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacat |
292 |
Q |
| |
|
||||||| |||||||| |||| || ||||||||||||||||| ||||||||||| |||||||||| | || ||||| | ||| ||||||||||||| |
|
|
| T |
26749633 |
ccacgagccactttttcatgaacgaagtgaatatccatctcgatgtgtttagtgcgttgatgttgaaaagggttcccagataaatatatcgcactaacat |
26749732 |
T |
|
| Q |
293 |
tatcacaatacaccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaaccacattggcaacgcctcg |
392 |
Q |
| |
|
| ||||| || |||| | ||||||| ||||||||||| | ||| | ||| || || ||||||||||| |||||| | || ||||||||||| |||| |
|
|
| T |
26749733 |
tgtcacagtagaccatggtagccttgtatataggacaatgtaactccaaaagtaggttgcgtaaccaacaagactcagatacgacattggcaacacctca |
26749832 |
T |
|
| Q |
393 |
gtattctgcctccgcactagaacg |
416 |
Q |
| |
|
|||||| || || ||||||||||| |
|
|
| T |
26749833 |
gtattcggcttcagcactagaacg |
26749856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 205 - 747
Target Start/End: Complemental strand, 28081598 - 28081056
Alignment:
| Q |
205 |
ttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacattatcacaataca |
304 |
Q |
| |
|
||||| ||||||||||| || |||||||| |||||||| || || || || ||||||| || || || ||||| || ||||| ||||| ||||| | | |
|
|
| T |
28081598 |
ttttcacgaacaaaatggatgtccatctcaatatgtttcgttcgttggtgctgaactgggttacctgaaagatatatggcacttacattgtcacagaaaa |
28081499 |
T |
|
| Q |
305 |
ccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaaccacattggcaacgcctcggtattctgcctc |
404 |
Q |
| |
|
||| | | || || ||||||||||||| | ||||||||| ||||| |||||||||||||| || ||||||||| ||||| || |||||||| || | |
|
|
| T |
28081498 |
ccatggtggctttgtgaataggacaatgtaactcaagaagtagattgcgtaaccaacatgattccgcaaccacatttgcaactccacggtattcggcttt |
28081399 |
T |
|
| Q |
405 |
cgcactagaacgtgacaaagtagctttccgtttggcggaccaagaaattaaattatcaccaagaaacacacaataaccagatgtagagcgtagggtatcc |
504 |
Q |
| |
|
|||||||| | || || || | || || |||| ||||| || | || ||||| |||||||||||||||||||||| || || ||| || || |
|
|
| T |
28081398 |
agcactagagcaagataatgtgggttgcctcttggacgaccatgagagtaggttatccgcaagaaacacacaataaccagaggtggaacgtctagtgtcg |
28081299 |
T |
|
| Q |
505 |
ggacacccaccccaatcagcatctgtataagaaatgaaagtggatgtggaggatggatagagatgaagaccatgatccagagtaccctgaatgtagcgca |
604 |
Q |
| |
|
|| |||| ||||||||| |||||||||||||||| || | ||| || || |||||||| ||||| | |||||| | | || || |||||||||| | |
|
|
| T |
28081298 |
gggaaccctccccaatcaacatctgtataagaaattaaggaggaagtagatgatggataaagatgtaaaccatgttggatggtgccacgaatgtagcgta |
28081199 |
T |
|
| Q |
605 |
caatgcgcttgagagcatgcatatgttcttcccttgggtcatgcatgaataaacacacctgttgcacatcataagcaatatcaggtctcgtgaaagtgag |
704 |
Q |
| |
|
||| || ||||||| ||||| || ||||| | || | |||||||| | ||| | ||||| || |||||| ||| || |||| ||||||||||| |
|
|
| T |
28081198 |
aaatacgtctgagagcgtgcatgtgagcttccatgggattgtgcatgaagagacatatttgttgtactgcataagaaatgtctggtcgagtgaaagtgag |
28081099 |
T |
|
| Q |
705 |
gtattgaagagcacctacaaggcttcgataatgagatggatct |
747 |
Q |
| |
|
|| ||||| |||||| ||||||||||||| ||| ||||||| |
|
|
| T |
28081098 |
atactgaagtgcacctgcaaggcttcgatagagagttggatct |
28081056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 308
Target Start/End: Original strand, 22207760 - 22207863
Alignment:
| Q |
205 |
ttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacattatcacaataca |
304 |
Q |
| |
|
||||| |||||||| ||||| |||||||| | |||||||||||| ||||| || |||||||| ||| | ||||| || |||||| |||||||||||| | |
|
|
| T |
22207760 |
ttttctcgaacaaagtgaatgtccatctcaacatgtttagtgcgttgatgatgtactgaattaccaaaaagatagatgtcactaatattatcacaatata |
22207859 |
T |
|
| Q |
305 |
ccaa |
308 |
Q |
| |
|
|||| |
|
|
| T |
22207860 |
ccaa |
22207863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 8e-30; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 205 - 544
Target Start/End: Original strand, 4185733 - 4186072
Alignment:
| Q |
205 |
ttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacattatcacaataca |
304 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||| || | |||||||| || | || |||||||||||||| ||||| ||||||||| |||| | |
|
|
| T |
4185733 |
ttttcgcaaacaaaatgaatatccatctcaatatgttttgttctttgatgttggaccgggttaccagagagataaattgcactgacattatcataataaa |
4185832 |
T |
|
| Q |
305 |
ccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaaccacattggcaacgcctcggtattctgcctc |
404 |
Q |
| |
|
||| | | || || |||||||||| || | |||||| |||||||| |||| ||||||||| | | | | |||||||||||| || |||||||| || || |
|
|
| T |
4185833 |
ccatggttgctttgtgaataggacactgtaactcaaggagaagattgcgtagccaacatgatttagagatcacattggcaactccacggtattcggcttc |
4185932 |
T |
|
| Q |
405 |
cgcactagaacgtgacaaagtagctttccgtttggcggaccaagaaattaaattatcaccaagaaacacacaataaccagatgtagagcgtagggtatcc |
504 |
Q |
| |
|
|||||| | || || || || | | || ||| | |||||||| || | ||||| |||||||| | ||| || ||||| ||||| ||| ||| || |
|
|
| T |
4185933 |
ggcactaaatcgggataaggtgggctgccatttagatgaccaagatatcaggttatctccaagaaagatacagtagccagaagtagaacgtctggtgtcg |
4186032 |
T |
|
| Q |
505 |
ggacacccaccccaatcagcatctgtataagaaatgaaag |
544 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
4186033 |
gggcacccaccccaatcagcatctgtatatgaaattaaag |
4186072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 205 - 539
Target Start/End: Complemental strand, 34013873 - 34013539
Alignment:
| Q |
205 |
ttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacattatcacaataca |
304 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || | |||||||| || | || |||||||||||||| ||||| |||||||||||||| | |
|
|
| T |
34013873 |
ttttcgcgaacaaaatgaatatccatctcaatatgttttgttctttgatgttggaccgggttaccagagagataaattgcactgacattatcacaataaa |
34013774 |
T |
|
| Q |
305 |
ccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaaccacattggcaacgcctcggtattctgcctc |
404 |
Q |
| |
|
||| | | || || |||||| ||| || | ||||| |||||||| ||| ||||||||| ||| | |||| ||||||||| || | |||||| || || |
|
|
| T |
34013773 |
ccatggttgctttgtgaatagaacactgtaattcaaggagaagattgtgtagccaacatgattcagagaccatattggcaactccacagtattcggcttc |
34013674 |
T |
|
| Q |
405 |
cgcactagaacgtgacaaagtagctttccgtttggcggaccaagaaattaaattatcaccaagaaacacacaataaccagatgtagagcgtagggtatcc |
504 |
Q |
| |
|
|||||||| || || || || | | |||||| | |||||||| || | ||||| |||||||| ||||| || ||||| ||||| ||| ||| || |
|
|
| T |
34013673 |
ggcactagatcgggataaggtgggctgccgtttagatgaccaagatatcaggttatctccaagaaagacacagtatccagaagtagaccgtctggtgtcg |
34013574 |
T |
|
| Q |
505 |
ggacacccaccccaatcagcatctgtataagaaat |
539 |
Q |
| |
|
|| |||||||| |||||||||| |||||| ||||| |
|
|
| T |
34013573 |
gggcacccacctcaatcagcatttgtatatgaaat |
34013539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 205 - 308
Target Start/End: Original strand, 48099535 - 48099638
Alignment:
| Q |
205 |
ttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacattatcacaataca |
304 |
Q |
| |
|
||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| |||| ||| ||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
48099535 |
ttttctcgaacaaagtgaatgtccatctcaatatgtttagtgcgctgatgttgtactggattaccagaaaggtaaatggcactaacattatcacaataca |
48099634 |
T |
|
| Q |
305 |
ccaa |
308 |
Q |
| |
|
|||| |
|
|
| T |
48099635 |
ccaa |
48099638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 181 - 413
Target Start/End: Complemental strand, 33287507 - 33287275
Alignment:
| Q |
181 |
actcgaacttccccacgagtaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaa |
280 |
Q |
| |
|
|||||||||| || |||| |||||||| ||||| ||||||||||||||||| || ||||| || || ||||||||||| | ||| || ||||| || | |
|
|
| T |
33287507 |
actcgaacttgaccccgagctactttttcacgaacgaaatgaatatccatctcaatgtgtttcgttcgttgatgttgaaccggattacccgagaggtaga |
33287408 |
T |
|
| Q |
281 |
tcgcactaacattatcacaatacaccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaaccacatt |
380 |
Q |
| |
|
| ||||| || ||||||||||| |||||| ||||||| ||||||| | || ||||| || | |||||| | |||||| || || || | |||||||| |
|
|
| T |
33287407 |
tagcactgacgttatcacaatagaccaaggtagccttatgaatagggtagtgtagctcgagcaaaagatttcttaaccagcaggattctgagaccacatt |
33287308 |
T |
|
| Q |
381 |
ggcaacgcctcggtattctgcctccgcactaga |
413 |
Q |
| |
|
||||||||| | ||||||||| || |||||||| |
|
|
| T |
33287307 |
ggcaacgccacagtattctgcttcagcactaga |
33287275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 308
Target Start/End: Original strand, 24647357 - 24647453
Alignment:
| Q |
212 |
gaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacattatcacaatacaccaa |
308 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| ||||||||||| | || ||| ||| || || || ||| |||||||||||||||||||||| |
|
|
| T |
24647357 |
gaacaaagtgaatatccatctcaatatgtttagtacgctgatgttgcaatggattaacagcaaggtagatggcattaacattatcacaatacaccaa |
24647453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 460 - 533
Target Start/End: Original strand, 48099790 - 48099863
Alignment:
| Q |
460 |
tcaccaagaaacacacaataaccagatgtagagcgtagggtatccggacacccaccccaatcagcatctgtata |
533 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| || |||| || ||||| ||||||||||||||||| ||||| |
|
|
| T |
48099790 |
tcaccaagaaacacacaatagccagaggtagaacgacgggtgtctggacatccaccccaatcagcatcagtata |
48099863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 308
Target Start/End: Original strand, 24638428 - 24638524
Alignment:
| Q |
212 |
gaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacattatcacaatacaccaa |
308 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| |||||||||| | || ||| ||| || || || ||| |||||||||||||||||||||| |
|
|
| T |
24638428 |
gaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaacagcaaggtagatggcattaacattatcacaatacaccaa |
24638524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 308
Target Start/End: Original strand, 29074175 - 29074290
Alignment:
| Q |
193 |
ccacgagtaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacat |
292 |
Q |
| |
|
||||||| |||||||| || ||||| ||||| |||||| | |||| || || ||||||||||| || | ||| |||||||| || || ||||||||| |
|
|
| T |
29074175 |
ccacgagctactttttcccgtacaaagtgaatctccatcacaatatacttggtacgctgatgttgtacaggattaccagagaggtagatgacactaacat |
29074274 |
T |
|
| Q |
293 |
tatcacaatacaccaa |
308 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
29074275 |
tgtcacaatacaccaa |
29074290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 262
Target Start/End: Complemental strand, 8045298 - 8045232
Alignment:
| Q |
196 |
cgagtaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactg |
262 |
Q |
| |
|
|||||||||||||| || ||||| || ||||| || ||||| ||||| ||||| ||||||||||||| |
|
|
| T |
8045298 |
cgagtaactttttcccgcacaaagtgtatatcaatttcgatgtgtttggtgcgttgatgttgaactg |
8045232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 205 - 524
Target Start/End: Complemental strand, 40948 - 40629
Alignment:
| Q |
205 |
ttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacattatcacaataca |
304 |
Q |
| |
|
||||| || ||||| ||||| ||||| || |||||||| || ||||||||||| || | ||| |||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
40948 |
ttttcccgtacaaagtgaatgtccatttcaatatgtttggtacgctgatgttgcacaggattaccagagagataaatggcactaacattgtcacaataca |
40849 |
T |
|
| Q |
305 |
ccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaaccacattggcaacgcctcggtattctgcctc |
404 |
Q |
| |
|
|||| | |||| |||||||| |||||||||| | | ||| ||||| | ||||||||||||| | || ||||| ||||| |||| ||||| || || |
|
|
| T |
40848 |
ccaaagtggcctgaggaataggaaaatgaagctccaataaaaggttacgaatccaacatgactcagatacaacattagcaacacctctatattcggcttc |
40749 |
T |
|
| Q |
405 |
cgcactagaacgtgacaaagtagctttccgtttggcggaccaagaaattaaattatcaccaagaaacacacaataaccagatgtagagcgtagggtatcc |
504 |
Q |
| |
|
||||| || | || | ||| | | || ||||| |||||||| || | || ||||||||||| ||||| || ||||||||||| ||| ||||||| |
|
|
| T |
40748 |
agcactggagtgagagagagtgggctgccttttggaagaccaagagataaggttgtcaccaagaaaaacacagtacccagatgtagaacgtcgggtatca |
40649 |
T |
|
| Q |
505 |
ggacacccaccccaatcagc |
524 |
Q |
| |
|
||||| | |||||||||||| |
|
|
| T |
40648 |
ggacatctaccccaatcagc |
40629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 193 - 524
Target Start/End: Complemental strand, 32042 - 31711
Alignment:
| Q |
193 |
ccacgagtaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacat |
292 |
Q |
| |
|
||||||| ||| ||||| |||||||||||||| |||||||| |||||||| ||||||||||| || || | ||| ||||| ||||| || |||||||||| |
|
|
| T |
32042 |
ccacgagcaaccttttcccgaacaaaatgaatgtccatctcaatatgttttgtgcgctgatgctgcacaggattaccagatagatagatggcactaacat |
31943 |
T |
|
| Q |
293 |
tatcacaatacaccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaaccacattggcaacgcctcg |
392 |
Q |
| |
|
| |||||||||||||| | |||| |||||||| |||| || || ||||||||||| || | | |||| || ||| | | ||||| ||||| ||||| |
|
|
| T |
31942 |
tgtcacaatacaccaaagttgcctgaggaataggaaaatggagttccagaagaagattgcgaatctaacacgattcagagataacatttgcaacacctcg |
31843 |
T |
|
| Q |
393 |
gtattctgcctccgcactagaacgtgacaaagtagctttccgtttggcggaccaagaaattaaattatcaccaagaaacacacaataaccagatgtagag |
492 |
Q |
| |
|
||||| || || ||||||||| | || | ||| | | || ||||| ||||||||||| | || ||||| ||||| ||||| || |||||||||| |
|
|
| T |
31842 |
atattcagcttcagcactagaatgggagagagttggctgccttttggaagaccaagaaataaggttgtcacctagaaaaacacagtatacagatgtagaa |
31743 |
T |
|
| Q |
493 |
cgtagggtatccggacacccaccccaatcagc |
524 |
Q |
| |
|
||| ||| || ||||| |||||||||||||| |
|
|
| T |
31742 |
cgtctggtgtcaggacatccaccccaatcagc |
31711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 2e-24; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 193 - 491
Target Start/End: Complemental strand, 28552956 - 28552658
Alignment:
| Q |
193 |
ccacgagtaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacat |
292 |
Q |
| |
|
||||||| |||||||| ||||| || ||||||||||||||||| ||||||||||| |||| |||||| | || ||||| | ||| ||||||||||||| |
|
|
| T |
28552956 |
ccacgagccactttttcacgaacgaagtgaatatccatctcgatgtgtttagtgcgttgatattgaacagggttcccagataaatatatcgcactaacat |
28552857 |
T |
|
| Q |
293 |
tatcacaatacaccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaaccacattggcaacgcctcg |
392 |
Q |
| |
|
| ||||| || |||| | ||||||| ||||||||||| | ||| | ||| || || ||||||||| | |||||| | || ||||||||||| | ||| |
|
|
| T |
28552856 |
tgtcacagtagaccatggtagccttgtagataggacaatgtaactccaaaagtaggttgcgtaaccaagaagactcagatacgacattggcaacacttcg |
28552757 |
T |
|
| Q |
393 |
gtattctgcctccgcactagaacgtgacaaagtagctttccgtttggcggaccaagaaattaaattatcaccaagaaacacacaataaccagatgtaga |
491 |
Q |
| |
|
|||||| | || |||||||| || || || || | || ||||||| ||||| || || ||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
28552756 |
gtattcgacttcagcactagagcgagataatgtgggttggcgtttggaagaccacgagtgtagattgtcaccaagaaatacacaataaccagaagtaga |
28552658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 193 - 398
Target Start/End: Complemental strand, 28560923 - 28560719
Alignment:
| Q |
193 |
ccacgagtaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacat |
292 |
Q |
| |
|
||||||| |||||||| ||||| || ||||||||||||||||| |||||| |||| ||||||||||| | || ||||| | ||| |||||||||||| |
|
|
| T |
28560923 |
ccacgagccactttttcacgaacgaagtgaatatccatctcgatgtgtttactgcgttgatgttgaacagggttcccagataaatatatcgcactaaca- |
28560825 |
T |
|
| Q |
293 |
tatcacaatacaccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaaccacattggcaacgcctcg |
392 |
Q |
| |
|
| ||||| || |||| | ||||||| ||||||||||| | ||| | ||| || || ||||||||| | |||||| | || ||||||||||| |||| |
|
|
| T |
28560824 |
tgtcacagtagaccatggtagccttgtagataggacaatgtaactccaaaagtaggttgcgtaaccaagaagactcagatacgacattggcaacacctca |
28560725 |
T |
|
| Q |
393 |
gtattc |
398 |
Q |
| |
|
|||||| |
|
|
| T |
28560724 |
gtattc |
28560719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 307
Target Start/End: Original strand, 1546020 - 1546125
Alignment:
| Q |
202 |
actttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacattatcacaat |
301 |
Q |
| |
|
|||||||| || ||||||||||| |||||||| |||||||| || |||||||| || | | ||| ||||| ||||| || ||||||||||| ||||||| |
|
|
| T |
1546020 |
actttttcccgtacaaaatgaatgtccatctcaatatgtttggtacgctgatgctgcgcaggattaccagatagatagatggcactaacattgtcacaat |
1546119 |
T |
|
| Q |
302 |
acacca |
307 |
Q |
| |
|
| |||| |
|
|
| T |
1546120 |
atacca |
1546125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 12169774 - 12169815
Alignment:
| Q |
201 |
aactttttcgcgaacaaaatgaatatccatctcgatatgttt |
242 |
Q |
| |
|
||||||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
12169774 |
aactttttctcgaacaaagtggatatccatctcgatatgttt |
12169815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 181 - 413
Target Start/End: Original strand, 30988 - 31220
Alignment:
| Q |
181 |
actcgaacttccccacgagtaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaa |
280 |
Q |
| |
|
|||||||||| || |||| |||||||| ||||| ||||||||||||||||| || ||||| | || ||||||||||| | ||| || ||||| || | |
|
|
| T |
30988 |
actcgaacttgaccccgagctactttttcacgaacgaaatgaatatccatctcaatgtgtttcattcgttgatgttgaaccggattacctgagaggtaga |
31087 |
T |
|
| Q |
281 |
tcgcactaacattatcacaatacaccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaacatgactcaaaaaccacatt |
380 |
Q |
| |
|
| ||||| || ||||||||||| |||||| ||||||| ||||||| || || ||||| || | |||||| | |||||| || | || | |||||||| |
|
|
| T |
31088 |
tagcactgacgttatcacaatagaccaaggtagccttatgaatagggcagtgtagctcgagcaaaagatttcttaaccagcagaattctgagaccacatt |
31187 |
T |
|
| Q |
381 |
ggcaacgcctcggtattctgcctccgcactaga |
413 |
Q |
| |
|
||||||||| ||||||||||| || |||||||| |
|
|
| T |
31188 |
ggcaacgccacggtattctgcttcagcactaga |
31220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 263 - 390
Target Start/End: Complemental strand, 40621028 - 40620901
Alignment:
| Q |
263 |
aatttccagagagataaatcgcactaacattatcacaatacaccaagctagcctttcgaataggacaatgaagctcaagaagaagattacgtaaccaaca |
362 |
Q |
| |
|
|||| |||||||||||||| |||||||||| |||||||||||||| || ||| |||| ||| |||||||||| || | ||| ||||| | |||| | |
|
|
| T |
40621028 |
aattaccagagagataaatgacactaacattgtcacaatacaccaacgtatcctggggaatgggaaaatgaagctccagtaaaaggttacgaagccaata |
40620929 |
T |
|
| Q |
363 |
tgactcaaaaaccacattggcaacgcct |
390 |
Q |
| |
|
||||||||| || ||||| |||| |||| |
|
|
| T |
40620928 |
tgactcaaatacaacattagcaaggcct |
40620901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 10260774 - 10260683
Alignment:
| Q |
208 |
tcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacattatcaca |
299 |
Q |
| |
|
||||| ||||| ||||| |||||||| ||||| ||||| ||||||||||| || ||| |||||||| || || ||||||||||| ||||| |
|
|
| T |
10260774 |
tcgcgtacaaagtgaatgtccatctcaatatgcttagtacgctgatgttgtacaagattaccagagaggtagatagcactaacattgtcaca |
10260683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 308
Target Start/End: Original strand, 5775 - 5890
Alignment:
| Q |
193 |
ccacgagtaactttttcgcgaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttgaactgaatttccagagagataaatcgcactaacat |
292 |
Q |
| |
|
||||||| |||||||| || ||||| ||||| ||||| || ||||| || || || |||||||| || ||| ||||||||||| || ||||||||| |
|
|
| T |
5775 |
ccacgagctactttttcccgtacaaagtgaatgtccatttcaatatgcttggtacgttgatgttgcacatgattaccagagagatagatgacactaacat |
5874 |
T |
|
| Q |
293 |
tatcacaatacaccaa |
308 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
5875 |
tgtcacaatacaccaa |
5890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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