View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4740-Insertion-4 (Length: 860)
Name: NF4740-Insertion-4
Description: NF4740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4740-Insertion-4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 477 - 810
Target Start/End: Original strand, 8259257 - 8259584
Alignment:
| Q |
477 |
ttatataatgtaaaattgtatacaactataattagagaggaaaaagcaattgataaaaacattgctattattaatttgtacaacttgcaagtaaaatgaa |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8259257 |
ttatataatgtaaaattgtatacaactataattagagaggaaaaagcaattgataaaaacattgctattattaatttgtacaacttgcaagtaaaatgaa |
8259356 |
T |
|
| Q |
577 |
aaatgtgctgcaggaactaacctactacacatgtgctataggataagtgcactattcacattttataatttacatactattacactcttcagacctcaaa |
676 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8259357 |
aaatgtgctgcaggaactaacctactacacatgtgctataggata----cactattcacattttataatttacatactattacactcttcaaacctcaaa |
8259452 |
T |
|
| Q |
677 |
gctatgagtgtgacaaaggcaagattgattagttaaacaagttaaaccatttttattgcaaattcaaattaaatcctcgtgcaaacgaccaccttcgact |
776 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
8259453 |
gctatgagtgtgacaaaggcaagattgattagttaaagaagttaaacca-ttttattgc-aattcaaattaaatcctcttgcaaacgaccaccttcaact |
8259550 |
T |
|
| Q |
777 |
gcatcatcaatttctttccctttggcaatttgaa |
810 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
8259551 |
gcatcatcaatttctttcccttttgcaatttgaa |
8259584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 307 - 475
Target Start/End: Original strand, 8258960 - 8259127
Alignment:
| Q |
307 |
aaagttcaaacaaattccctttggataatttaaatttaatattattttaaaatagcaaaaatattgtttgcttcaaatttcattataggcttcctaaaca |
406 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8258960 |
aaagttcaaataaattccctttggataatttaaatttaatattattttaaaatagcaaaaatattgtttgcttcaaatttcattataggcttcctaaaca |
8259059 |
T |
|
| Q |
407 |
atgttttgctatgtaattatgaagtcatccttaannnnnnnncagtttggttagttccaaaccttaaac |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
8259060 |
atgttttgctatgtaattatgaagtcatccttaa-tttttttcagttcggttagttccaaaccttaaac |
8259127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 8258737 - 8258824
Alignment:
| Q |
7 |
acaaagtgcatcaaatgggagtatgcaacatatggctcttgtggaggcttttatattgattgtgtctgcttctttaattgttgagcag |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8258737 |
acaaagtgcatcaaatgggagtatgcaacatatggctcttgtggaggcttttatattgattgtatctgcttctttaattgttgagcag |
8258824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 8258873 - 8258962
Alignment:
| Q |
143 |
tattgcattgtccctgcaactaaatttataggtatgagtagagaacccaacactagttgtttcccatgaaaatcctgaagtatggtgaaa |
232 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8258873 |
tattgcattatccctacaactaaatttataggtatgagtagagaacccaacactagttgtttcccatgaaaatcctgaagtatgatgaaa |
8258962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 477 - 512
Target Start/End: Original strand, 8259221 - 8259256
Alignment:
| Q |
477 |
ttatataatgtaaaattgtatacaactataattaga |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
8259221 |
ttatataatgtaaaattgtatacaactataattaga |
8259256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University