View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4740-Insertion-5 (Length: 639)

Name: NF4740-Insertion-5
Description: NF4740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4740-Insertion-5
NF4740-Insertion-5
[»] scaffold0007 (2 HSPs)
scaffold0007 (447-639)||(192787-192982)
scaffold0007 (288-450)||(192490-192655)
[»] chr5 (27 HSPs)
chr5 (48-179)||(37873592-37873723)
chr5 (55-200)||(3114096-3114241)
chr5 (65-226)||(27336732-27336893)
chr5 (55-226)||(35310477-35310648)
chr5 (48-174)||(43129556-43129682)
chr5 (54-174)||(13166869-13166989)
chr5 (65-226)||(43115365-43115525)
chr5 (54-174)||(32269756-32269876)
chr5 (48-152)||(38875660-38875764)
chr5 (48-175)||(42921719-42921846)
chr5 (64-174)||(15291985-15292095)
chr5 (61-183)||(33692005-33692127)
chr5 (54-144)||(25663021-25663111)
chr5 (63-167)||(14423715-14423819)
chr5 (63-144)||(8100589-8100670)
chr5 (48-152)||(26212564-26212668)
chr5 (62-126)||(34335373-34335437)
chr5 (64-138)||(26577395-26577469)
chr5 (48-138)||(35455978-35456068)
chr5 (84-149)||(8858974-8859039)
chr5 (62-101)||(22188687-22188726)
chr5 (83-140)||(13307413-13307470)
chr5 (58-151)||(32230489-32230582)
chr5 (64-107)||(430640-430683)
chr5 (67-138)||(14436541-14436609)
chr5 (58-107)||(14723270-14723319)
chr5 (64-124)||(9829361-9829421)
[»] chr6 (17 HSPs)
chr6 (54-226)||(33220618-33220790)
chr6 (48-174)||(45636-45762)
chr6 (48-200)||(959602-959754)
chr6 (54-174)||(17249264-17249384)
chr6 (46-125)||(34415456-34415535)
chr6 (54-226)||(28543403-28543575)
chr6 (48-174)||(4206555-4206681)
chr6 (54-182)||(34304524-34304652)
chr6 (64-183)||(357667-357786)
chr6 (48-151)||(24016359-24016462)
chr6 (48-134)||(4165921-4166007)
chr6 (48-167)||(34554243-34554362)
chr6 (64-145)||(6225110-6225191)
chr6 (48-140)||(28625952-28626045)
chr6 (64-130)||(3714955-3715021)
chr6 (65-183)||(29338029-29338147)
chr6 (71-180)||(34168913-34169022)
[»] scaffold0490 (1 HSPs)
scaffold0490 (48-174)||(6356-6482)
[»] chr8 (17 HSPs)
chr8 (54-174)||(500255-500375)
chr8 (48-226)||(35739894-35740071)
chr8 (64-174)||(39434705-39434815)
chr8 (54-183)||(3187997-3188127)
chr8 (48-174)||(24125050-24125176)
chr8 (48-200)||(38815316-38815468)
chr8 (48-226)||(25021721-25021899)
chr8 (64-152)||(28196230-28196318)
chr8 (54-174)||(6592603-6592723)
chr8 (72-174)||(8619860-8619962)
chr8 (95-174)||(37517163-37517242)
chr8 (64-174)||(4073573-4073683)
chr8 (54-151)||(6618312-6618409)
chr8 (48-140)||(8882350-8882441)
chr8 (54-174)||(10189571-10189691)
chr8 (65-143)||(10556283-10556361)
chr8 (54-103)||(37514249-37514298)
[»] chr7 (31 HSPs)
chr7 (48-183)||(32584623-32584758)
chr7 (56-167)||(45613808-45613919)
chr7 (48-174)||(21326797-21326923)
chr7 (48-167)||(982971-983090)
chr7 (48-167)||(19277315-19277434)
chr7 (64-225)||(28517195-28517356)
chr7 (54-174)||(24527617-24527737)
chr7 (54-140)||(30216051-30216137)
chr7 (61-134)||(40726479-40726552)
chr7 (54-226)||(22198014-22198186)
chr7 (54-226)||(22239635-22239807)
chr7 (48-226)||(43856896-43857074)
chr7 (54-134)||(27521499-27521579)
chr7 (48-226)||(5825295-5825471)
chr7 (48-107)||(42295210-42295269)
chr7 (64-174)||(4501296-4501406)
chr7 (68-178)||(9281087-9281196)
chr7 (68-178)||(9292058-9292167)
chr7 (48-106)||(48539203-48539261)
chr7 (114-174)||(1249674-1249734)
chr7 (70-174)||(25186895-25186999)
chr7 (64-174)||(3676677-3676788)
chr7 (68-173)||(2904407-2904512)
chr7 (45-126)||(34067869-34067949)
chr7 (48-140)||(10905140-10905231)
chr7 (65-140)||(7637505-7637579)
chr7 (54-121)||(47679153-47679220)
chr7 (70-112)||(10032192-10032234)
chr7 (82-152)||(26770453-26770523)
chr7 (63-175)||(34772818-34772928)
chr7 (64-140)||(24566960-24567036)
[»] chr3 (21 HSPs)
chr3 (48-179)||(4473083-4473214)
chr3 (54-207)||(39583155-39583308)
chr3 (48-162)||(37132970-37133084)
chr3 (57-174)||(44198798-44198915)
chr3 (54-226)||(7900886-7901058)
chr3 (48-140)||(53785731-53785823)
chr3 (49-126)||(49017986-49018063)
chr3 (64-140)||(38670874-38670949)
chr3 (47-174)||(13582531-13582657)
chr3 (64-183)||(46940720-46940839)
chr3 (48-126)||(52741519-52741597)
chr3 (49-174)||(38978758-38978883)
chr3 (54-173)||(26772786-26772905)
chr3 (45-132)||(32546814-32546901)
chr3 (67-174)||(35484651-35484758)
chr3 (48-140)||(7502004-7502097)
chr3 (54-174)||(3443271-3443391)
chr3 (54-174)||(5338671-5338794)
chr3 (54-140)||(26856755-26856841)
chr3 (64-168)||(38146094-38146198)
chr3 (63-107)||(52411917-52411961)
[»] chr4 (26 HSPs)
chr4 (64-226)||(53619624-53619786)
chr4 (49-166)||(30940706-30940822)
chr4 (62-174)||(48656869-48656981)
chr4 (64-179)||(50000879-50000995)
chr4 (62-188)||(55933407-55933533)
chr4 (54-167)||(132413-132526)
chr4 (62-181)||(12918324-12918443)
chr4 (54-179)||(31847115-31847240)
chr4 (48-152)||(56462088-56462191)
chr4 (48-152)||(34107675-34107781)
chr4 (48-174)||(600651-600777)
chr4 (48-105)||(7536599-7536656)
chr4 (69-150)||(23255747-23255828)
chr4 (58-126)||(16957574-16957642)
chr4 (54-174)||(25504323-25504441)
chr4 (55-171)||(50462908-50463024)
chr4 (54-109)||(3330024-3330079)
chr4 (48-107)||(50483222-50483281)
chr4 (48-174)||(12053435-12053561)
chr4 (54-134)||(46440888-46440968)
chr4 (48-140)||(28739927-28740020)
chr4 (64-107)||(24719972-24720015)
chr4 (48-174)||(26521510-26521636)
chr4 (69-135)||(34536930-34536996)
chr4 (64-134)||(41440081-41440151)
chr4 (45-131)||(43849350-43849436)
[»] chr1 (22 HSPs)
chr1 (48-174)||(29169752-29169878)
chr1 (54-226)||(34644594-34644766)
chr1 (46-173)||(4861949-4862076)
chr1 (48-134)||(28041126-28041212)
chr1 (48-174)||(19035469-19035595)
chr1 (48-140)||(21473025-21473117)
chr1 (48-140)||(45659641-45659733)
chr1 (48-151)||(36486908-36487011)
chr1 (48-140)||(20259790-20259882)
chr1 (84-174)||(50161376-50161466)
chr1 (49-174)||(25375792-25375917)
chr1 (54-140)||(22346923-22347009)
chr1 (62-140)||(31737316-31737394)
chr1 (64-180)||(16500072-16500188)
chr1 (48-144)||(2898724-2898823)
chr1 (54-104)||(24177540-24177590)
chr1 (48-174)||(37932177-37932302)
chr1 (54-134)||(2764507-2764587)
chr1 (55-140)||(37200012-37200096)
chr1 (64-183)||(42919898-42920016)
chr1 (68-121)||(23993478-23993531)
chr1 (68-144)||(50314613-50314689)
[»] chr2 (20 HSPs)
chr2 (58-226)||(19161690-19161858)
chr2 (64-183)||(5532457-5532576)
chr2 (48-174)||(4413025-4413151)
chr2 (48-167)||(41867874-41867993)
chr2 (54-152)||(2888544-2888642)
chr2 (54-174)||(28225028-28225148)
chr2 (64-174)||(9685374-9685484)
chr2 (59-140)||(34814812-34814893)
chr2 (48-140)||(17344660-17344752)
chr2 (56-174)||(2886579-2886692)
chr2 (48-134)||(23484937-23485022)
chr2 (62-140)||(27502398-27502476)
chr2 (48-140)||(13147090-13147185)
chr2 (68-140)||(16351834-16351906)
chr2 (49-125)||(33612555-33612631)
chr2 (54-226)||(44686444-44686619)
chr2 (48-140)||(18744947-18745039)
chr2 (63-174)||(32029046-32029156)
chr2 (85-174)||(3825785-3825875)
chr2 (45-105)||(20142753-20142813)
[»] scaffold0148 (1 HSPs)
scaffold0148 (48-209)||(33272-33432)
[»] scaffold1768 (1 HSPs)
scaffold1768 (45-209)||(108-272)
[»] scaffold0009 (1 HSPs)
scaffold0009 (48-174)||(103128-103253)
[»] scaffold0110 (1 HSPs)
scaffold0110 (54-174)||(47498-47618)
[»] scaffold0031 (1 HSPs)
scaffold0031 (45-157)||(49430-49542)
[»] scaffold0470 (1 HSPs)
scaffold0470 (54-151)||(7630-7727)
[»] scaffold0493 (1 HSPs)
scaffold0493 (54-124)||(8525-8595)
[»] scaffold0224 (1 HSPs)
scaffold0224 (64-183)||(18315-18433)
[»] scaffold0119 (1 HSPs)
scaffold0119 (72-167)||(16180-16275)
[»] scaffold0186 (1 HSPs)
scaffold0186 (48-179)||(10382-10517)


Alignment Details
Target: scaffold0007 (Bit Score: 162; Significance: 4e-86; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 447 - 639
Target Start/End: Original strand, 192787 - 192982
Alignment:
Q  447 taatacatttatctcaagatattgtcaatttcaggttcaaatgaattctcttgcaaacctgca---tgattcaataaaaacatgaattttcagaaacaaa 543  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||| || |||||||||    
T  192787 taatacatttatctcaagatattgtcaatttcaggttcaaatgaattctcttgcaaacctgcaaaatgattcaataaaaacatgaatattgagaaacaaa 192886  T
Q  544 aagaatttaaaatatatttggttacacaatattgtttagcagaatatgaattacttgagcatgatattgcttcggtgagctttctttgcagttcag 639  Q
    | ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  192887 acgaatttaaaatatctttggtcacacaatattgtttagcagaatatgaattacttgagcatgatattgcttcggtgagctttctttgcagttcag 192982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 288 - 450
Target Start/End: Original strand, 192490 - 192655
Alignment:
Q  288 cgtgtattctctacattgaacacaccaacattaaatttttgcatgac-----tttctaactacaacaaaaaagagattaatgaggtagctcatggagtat 382  Q
    |||||||||||||||| |||||   |||||| |||||||||||||||     |||||||||| |||||||||||||| |||||| |||||||||||||||    
T  192490 cgtgtattctctacatagaacat--caacatgaaatttttgcatgacgattgtttctaactagaacaaaaaagagatcaatgagctagctcatggagtat 192587  T
Q  383 tgcatgcatgccactatgaatttgaatcttcagatagctgaactttagattatgattgcacacgtaat 450  Q
    ||||||||| |||||||||||||||||||||| | ||||||||||||||||| || ||||||| ||||    
T  192588 tgcatgcattccactatgaatttgaatcttcaaaaagctgaactttagattaagactgcacacataat 192655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 8e-35; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 48 - 179
Target Start/End: Complemental strand, 37873723 - 37873592
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| |||||| || |||||||||||| ||||| ||||||||||||||||||||||||| |||  ||||||||||||| ||||||| ||||| |||| |    
T  37873723 tggtgctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcaact 37873624  T
Q  148 tttagtgctgtctgtcctaccgtaaaaacccc 179  Q
    ||||| ||||||||||||||||||||| ||||    
T  37873623 tttagagctgtctgtcctaccgtaaaagcccc 37873592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 3114241 - 3114096
Alignment:
Q  55 aggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtg 154  Q
    |||||||| |||||||||||||||||| ||||||||||||||||| ||||||| ||   ||||||||||||| |||||||  ||||||||| |||||| |    
T  3114241 aggaaaccaaaagtgtcaaaaacaaatggtataaaaacatgttgactgtcagaacatgctttctcatgtttggccactttgtttgatgcaacttttaggg 3114142  T
Q  155 ctgtctgtcctaccgtaaaaaccccgacctttaatctcataagtgg 200  Q
    ||| |||||||||||||||| ||||||||  ||||| ||| |||||    
T  3114141 ctgcctgtcctaccgtaaaagccccgacccctaatcccatgagtgg 3114096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 27336732 - 27336893
Alignment:
Q  65 aagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtcc 164  Q
    ||||||||||| ||||| ||||||||  ||||||||||||||| ||| |||||||||||||||||||||| ||||| |||| |||||| |||||||||||    
T  27336732 aagtgtcaaaagcaaatggtataaaagtatgttgattgtcagaacacgatttctcatgtttgaccactttgcttgacgcaacttttagggctgtctgtcc 27336831  T
Q  165 taccgtaaaaaccccgacctttaatctcataagtggaaaaacccctttcaaatccacacatg 226  Q
    ||  |||||| |||| |||  ||| | || ||||||  |||||||  |||| ||||||||||    
T  27336832 tattgtaaaagcccccacccctaaacccacaagtggtgaaaccccagtcaagtccacacatg 27336893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 55 - 226
Target Start/End: Original strand, 35310477 - 35310648
Alignment:
Q  55 aggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtg 154  Q
    ||||| ||||||||||||||| || || |||||||| |||||||||||||||| ||   ||||||||||||| ||||||| ||||| |||  |||||| |    
T  35310477 aggaagccgaaagtgtcaaaagcagatggtataaaagcatgttgattgtcagaacatgctttctcatgtttggccactttgcttgacgcatcttttaggg 35310576  T
Q  155 ctgtctgtcctaccgtaaaaaccccgacctttaatctcataagtggaaaaacccctttcaaatccacacatg 226  Q
     ||||||||||||||||||| ||||||||  ||| | || ||||||  |||||||  |||| ||||||||||    
T  35310577 ttgtctgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaaccccaatcaagtccacacatg 35310648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 43129556 - 43129682
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| ||||||||||||| |||||||| ||||| ||| ||||||||||||||||||||| |||  ||||||||||||||||||||| ||||| |||  |    
T  43129556 tggtgttaggaaaccgaaaatgtcaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttgaccactttgcttgacgcatct 43129655  T
Q  148 tttagtgctgtctgtcctaccgtaaaa 174  Q
    |||||  |||  ||||| |||||||||    
T  43129656 tttaggactgaatgtccaaccgtaaaa 43129682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 13166989 - 13166869
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagt 153  Q
    |||||| ||||||||||||||| ||||| |||||||| |||||||||||||||| |||  ||||||||||||  ||||||| ||||| |||  ||||||     
T  13166989 taggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttagccactttgcttgacgcagattttagg 13166890  T
Q  154 gctgtctgtcctaccgtaaaa 174  Q
    | ||||||||| |||||||||    
T  13166889 gttgtctgtcccaccgtaaaa 13166869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 43115525 - 43115365
Alignment:
Q  65 aagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtcc 164  Q
    ||||||||||| |||||  ||| ||| |||||||||||||| | |||  |||||||| ||||||| ||||| || | |||| |||||| ||||||| |||    
T  43115525 aagtgtcaaaagcaaatgctatgaaagcatgttgattgtcaaaacacgctttctcatatttgaccgctttattt-acgcaacttttagggctgtctatcc 43115427  T
Q  165 taccgtaaaaaccccgacctttaatctcataagtggaaaaacccctttcaaatccacacatg 226  Q
    |||||||||| ||||||||| ||||| ||| |||||  |||||||  ||||||||| |||||    
T  43115426 taccgtaaaagccccgacctctaatcccatgagtggtgaaaccccgatcaaatccatacatg 43115365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 32269876 - 32269756
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagt 153  Q
    ||||||| ||||||| |||||| ||||| |||||||| | |||||||||||||| |||| |||||||||||||||||||||  ||||||||  ||||||     
T  32269876 taggaaatcgaaagtatcaaaagcaaatggtataaaagcgtgttgattgtcagaacacactttctcatgtttgaccactttggttgatgcagcttttagg 32269777  T
Q  154 gctgtctgtcctaccgtaaaa 174  Q
    | ||  ||||||||| |||||    
T  32269776 gttgcatgtcctaccataaaa 32269756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 38875660 - 38875764
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| |||||| | ||||||||||||||||||| ||| ||||||||||||||||||||| |||| |||||||||||||  | ||||  |||||||| ||    
T  38875660 tggtgctaggaagctgaaagtgtcaaaaacaaatggtacaaaaacatgttgattgtcagaacacactttctcatgtttggtcgctttgtttgatgcagtt 38875759  T
Q  148 tttag 152  Q
    |||||    
T  38875760 tttag 38875764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 42921719 - 42921846
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| ||||||||||||||||||| || ||||| |||||||| |||||||||||||||| |||  |||||| |||||||||||  ||||| | | | ||    
T  42921719 tggtgctaggaaaccgaaagtgtcataagcaaatggtataaaagcatgttgattgtcagaacacgttttctcgtgtttgaccaccatacttaacgtagtt 42921818  T
Q  148 tttagtgctgtctgtcctaccgtaaaaa 175  Q
    ||||| |||| ||||| ||| |||||||    
T  42921819 tttagggctgcctgtcttacggtaaaaa 42921846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 64 - 174
Target Start/End: Complemental strand, 15292095 - 15291985
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtc 163  Q
    ||||||| |||||||||| ||||||||||||||||||||||||| |||  ||||||||||||| |||||||  |||| || | |||||| | ||||||||    
T  15292095 aaagtgtaaaaaacaaattgtataaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgtttgacgccacttttagggttgtctgtc 15291996  T
Q  164 ctaccgtaaaa 174  Q
     ||||| ||||    
T  15291995 ataccgcaaaa 15291985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 61 - 183
Target Start/End: Complemental strand, 33692127 - 33692005
Alignment:
Q  61 ccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtct 160  Q
    ||||||||||||||| ||||| ||| |||| |||||||||||||| | |||  ||| ||||||||| ||||||| ||||| |||  ||||||  ||| ||    
T  33692127 ccgaaagtgtcaaaagcaaatggtacaaaagcatgttgattgtcataacacgttttgtcatgtttggccactttgcttgacgcagcttttaggcctgcct 33692028  T
Q  161 gtcctaccgtaaaaaccccgacc 183  Q
    |||||||||||||| ||||||||    
T  33692027 gtcctaccgtaaaagccccgacc 33692005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 25663111 - 25663021
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgca 144  Q
    |||||| | ||||||||||||| ||||| ||||||||||||||||||| ||||| |||  ||||||||||||| |||||||  ||||||||    
T  25663111 taggaagctgaaagtgtcaaaagcaaatggtataaaaacatgttgattatcagaacacgctttctcatgtttggccactttgtttgatgca 25663021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 14423715 - 14423819
Alignment:
Q  63 gaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgt 162  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||| |||  ||||||||||| |  |||||| ||||| ||| ||||||| | || ||||    
T  14423715 gaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgttcggtcactttgcttgacgcattttttagggttgcctgt 14423814  T
Q  163 cctac 167  Q
    |||||    
T  14423815 cctac 14423819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 8100589 - 8100670
Alignment:
Q  63 gaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgca 144  Q
    |||||||||| |||||||| |||||||| |||||  ||||||| | |||  ||||||||||||||||| |||||||||||||    
T  8100589 gaaagtgtcacaaacaaatggtataaaagcatgtaaattgtcacaacacgttttctcatgtttgaccattttacttgatgca 8100670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 26212668 - 26212564
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| || ||||| ||||| || |||||||||| |||||||| ||||||||| ||||||  ||  ||||||||||||| ||||||| ||||| |||| |    
T  26212668 tggtgctaagaaactgaaagggtaaaaaacaaatggtataaaagcatgttgatcgtcagaatacgctttctcatgtttggccactttgcttgacgcaact 26212569  T
Q  148 tttag 152  Q
    |||||    
T  26212568 tttag 26212564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 34335373 - 34335437
Alignment:
Q  62 cgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttg 126  Q
    |||||||||||||||||||| |||||||| |||||||||||||||  |||  |||||||||||||    
T  34335373 cgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaggacacgctttctcatgtttg 34335437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 26577469 - 26577395
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttactt 138  Q
    ||||||| ||| |||||| |||||||||||||||||| ||| || |||| ||||| ||||||||||| |||||||    
T  26577469 aaagtgtgaaacacaaattgtataaaaacatgttgatagtcggaacacactttcttatgtttgaccattttactt 26577395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 35455978 - 35456068
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttactt 138  Q
    ||||| |||||| || ||| |||||||| ||||  |||||||| |||||||||||| ||| |||  ||||||||||||||||| |||||||    
T  35455978 tggtgctaggaagccaaaattgtcaaaagcaaaaggtataaaagcatgttgattgttagaacacgctttctcatgtttgaccattttactt 35456068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 8858974 - 8859039
Alignment:
Q  84 tataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttt 149  Q
    |||||||||||||||||||||||| |||  ||||||||||||||| ||||| ||||| ||| ||||    
T  8858974 tataaaaacatgttgattgtcagaacacgctttctcatgtttgactactttgcttgacgcagtttt 8859039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 62 - 101
Target Start/End: Complemental strand, 22188726 - 22188687
Alignment:
Q  62 cgaaagtgtcaaaaacaaatagtataaaaacatgttgatt 101  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  22188726 cgaaagtgtcaaaaacaaatagtataaaatcatgttgatt 22188687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 13307413 - 13307470
Alignment:
Q  83 gtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    |||||||||||||||||| || |||  ||| ||||||||||||||||| |||||||||    
T  13307413 gtataaaaacatgttgatagtaagaatacactttctcatgtttgaccattttacttga 13307470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 58 - 151
Target Start/End: Complemental strand, 32230582 - 32230489
Alignment:
Q  58 aaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaattttta 151  Q
    ||||| |||||||| ||  || || |||||||| | |||||||||||||| |||| |||||||||||||  |||||| ||||| |||| |||||    
T  32230582 aaaccaaaagtgtcgaacgcagatggtataaaagcttgttgattgtcagaacacattttctcatgtttggtcactttgcttgacgcaactttta 32230489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 430640 - 430683
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcaga 107  Q
    |||||||||||| ||||| |||||||| ||||||||||||||||    
T  430640 aaagtgtcaaaagcaaatggtataaaagcatgttgattgtcaga 430683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 14436541 - 14436609
Alignment:
Q  67 gtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttactt 138  Q
    |||||||||||||||  ||||||||||||||||||   ||| |||  ||| ||||||||| |||||||||||    
T  14436541 gtgtcaaaaacaaatgatataaaaacatgttgatt---agaacacgttttttcatgtttggccactttactt 14436609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 14723319 - 14723270
Alignment:
Q  58 aaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcaga 107  Q
    ||||| ||||||| ||||||||||  ||||||| ||||||||||||||||    
T  14723319 aaaccaaaagtgtaaaaaacaaatgatataaaagcatgttgattgtcaga 14723270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 9829421 - 9829361
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtt 124  Q
    ||||||||||| | |||| |||||||| |||||||||||||| | |||| ||| |||||||    
T  9829421 aaagtgtcaaatataaatggtataaaagcatgttgattgtcaaaacacattttatcatgtt 9829361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 5e-33; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 54 - 226
Target Start/End: Complemental strand, 33220790 - 33220618
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagt 153  Q
    |||||| ||||||||||||||| ||||| |||||||| ||||||||||||||   |||  ||||||||||||| ||||||| |||||||||  ||||||     
T  33220790 taggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcaacacacgctttctcatgtttggccactttgcttgatgcagcttttaga 33220691  T
Q  154 gctgtctgtcctaccgtaaaaaccccgacctttaatctcataagtggaaaaacccctttcaaatccacacatg 226  Q
    ||||||||||||||||||||| ||||||||  ||| | || ||||||  |||||||  |||||| ||||||||    
T  33220690 gctgtctgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaaccccagtcaaattcacacatg 33220618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 45762 - 45636
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| || ||||||||||||||||||||||||| | |||||| |||||||||||||||| |||  |||||||||||||| |||||| |||||||||  |    
T  45762 tggtgctaagaaaccgaaagtgtcaaaaacaaatggaataaaagcatgttgattgtcagaacacgttttctcatgtttgatcactttgcttgatgcagct 45663  T
Q  148 tttagtgctgtctgtcctaccgtaaaa 174  Q
    ||||| |||| ||||||||| ||||||    
T  45662 tttagagctgcctgtcctacggtaaaa 45636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 48 - 200
Target Start/End: Original strand, 959602 - 959754
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| ||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| |||  ||||||||| ||  ||||||| |||||  ||| |    
T  959602 tggtgctaggaaaccgaaaatgtcaaaaacaaatggtataaagacatgttgattgtcagaacacgttttctcatggttagccactttgcttgacacaact 959701  T
Q  148 tttagtgctgtctgtcctaccgtaaaaaccccgacctttaatctcataagtgg 200  Q
    ||||| | ||| |||||||||||||||  ||||||   ||||| |||||||||    
T  959702 tttagggttgtttgtcctaccgtaaaaggcccgacacctaatcccataagtgg 959754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 17249384 - 17249264
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagt 153  Q
    |||||| || |||||||||||| ||||| |||||||| |||||||||||||||| |||| ||||||||||||| |||||||  |||| |||| ||||||     
T  17249384 taggaagccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacactttctcatgtttggccactttgtttgacgcaacttttagg 17249285  T
Q  154 gctgtctgtcctaccgtaaaa 174  Q
    | ||| |||||||||||||||    
T  17249284 gttgtttgtcctaccgtaaaa 17249264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 34415456 - 34415535
Alignment:
Q  46 tttggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgttt 125  Q
    ||||||| ||||||||| |||||||||||||||||| | |||||| |||||||||||||||| |||| ||||||||||||    
T  34415456 tttggtgttaggaaacctaaagtgtcaaaaacaaatggcataaaagcatgttgattgtcagaacacactttctcatgttt 34415535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 54 - 226
Target Start/End: Original strand, 28543403 - 28543575
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagt 153  Q
    |||||| | ||||||||||||| |||||||||||| | |||  ||||| ||| | ||| |||||||||||||| ||||||| ||||| || | |||||      
T  28543403 taggaagctgaaagtgtcaaaatcaaatagtataagagcatagtgattttcaaaacacgatttctcatgtttggccactttgcttgacgcgacttttaag 28543502  T
Q  154 gctgtctgtcctaccgtaaaaaccccgacctttaatctcataagtggaaaaacccctttcaaatccacacatg 226  Q
    |||| ||||| ||||||||||  || ||||| ||||| || ||||||  ||||| |  |||||||||||||||    
T  28543503 gctgcctgtcttaccgtaaaagtcctgacctctaatcccacaagtggtgaaacctcagtcaaatccacacatg 28543575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 4206681 - 4206555
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| |||||| ||||||||||||||| |||||  ||||||| |||||| ||||||||| |||  ||||||||||||  ||||||| ||||| || | |    
T  4206681 tggtgctaggaacccgaaagtgtcaaaagcaaatgatataaaagcatgttcattgtcagaacacgctttctcatgtttagccactttgcttgacgccact 4206582  T
Q  148 tttagtgctgtctgtcctaccgtaaaa 174  Q
    ||||  ||||  |||||||||||||||    
T  4206581 tttaaggctgcatgtcctaccgtaaaa 4206555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 54 - 182
Target Start/End: Original strand, 34304524 - 34304652
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagt 153  Q
    |||||| || |||||||||||| ||||| |||||||| |||||||||||||||| |||  |||||||||||||   | ||| ||||| |||  ||||||     
T  34304524 taggaagcccaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggttattttgcttgacgcagcttttagg 34304623  T
Q  154 gctgtctgtcctaccgtaaaaaccccgac 182  Q
    |||  |||||| ||||||||| |||||||    
T  34304624 gctagctgtccaaccgtaaaagccccgac 34304652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 183
Target Start/End: Complemental strand, 357786 - 357667
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtc 163  Q
    ||||||| |||||||||   ||||||| |||||| ||||||||| |||  ||||||||||||| ||||||| ||||| | |  |||||| |||| |||||    
T  357786 aaagtgttaaaaacaaaggttataaaagcatgttcattgtcagaacacgctttctcatgtttggccactttgcttgacgaagcttttagggctgcctgtc 357687  T
Q  164 ctaccgtaaaaaccccgacc 183  Q
    ||||||||||| | ||||||    
T  357686 ctaccgtaaaagcaccgacc 357667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 24016359 - 24016462
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| ||||||||| ||| | |||| | ||||| ||||||||||||||||||||| ||| ||   ||||||||||||||| | |||||||||||||| |    
T  24016359 tggtgctaggaaaccaaaactatcaatagcaaatggtataaaaacatgttgattgtgagaacaagctttctcatgtttgactattttacttgatgcaact 24016458  T
Q  148 ttta 151  Q
    ||||    
T  24016459 ttta 24016462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 4166007 - 4165921
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccacttt 134  Q
    ||||| |||||| ||||||||||||||| |||||  ||||||| |||||||||||||||| |||  ||||||||||||  |||||||    
T  4166007 tggtgctaggaacccgaaagtgtcaaaagcaaatgatataaaagcatgttgattgtcagaacacgctttctcatgtttagccacttt 4165921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 167
Target Start/End: Complemental strand, 34554362 - 34554243
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| |||||| ||||| |||||||||  |||| |||||||||||| |||||| ||||| |||  |||||||||||||  |  ||| ||||| |||| |    
T  34554362 tggtgctaggaagccgaatgtgtcaaaagtaaatggtataaaaacatcttgattatcagaacacgctttctcatgtttggtcgttttgcttgacgcaact 34554263  T
Q  148 tttagtgctgtctgtcctac 167  Q
    ||||||| |||||| |||||    
T  34554262 tttagtgttgtctgacctac 34554243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 6225110 - 6225191
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaa 145  Q
    ||||||||||| ||||||   ||| || |||||||||||||| | || |||||||||||||||||||||||| |||| ||||    
T  6225110 aaagtgtcaaacacaaatgacatataagcatgttgattgtcacaacaaaatttctcatgtttgaccactttatttgacgcaa 6225191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 28625952 - 28626045
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaaca-tgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    ||||| |||||||  |||||||| |||||||||| ||||||||| | |||||||||||||| |||  |||||| |||||  |||| ||||||||    
T  28625952 tggtgctaggaaattgaaagtgtaaaaaacaaatggtataaaaaaaatgttgattgtcagaacacgttttctcgtgtttagccaccttacttga 28626045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 3714955 - 3715021
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgacca 130  Q
    ||||||||||||||| ||  |||||||||||||| ||||| ||| |||  |||||||||||| ||||    
T  3714955 aaagtgtcaaaaacagatgatataaaaacatgttaattgtgagaacacgttttctcatgtttaacca 3715021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 65 - 183
Target Start/End: Complemental strand, 29338147 - 29338029
Alignment:
Q  65 aagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtcc 164  Q
    ||||||||||| ||||| |||||| | |||||||||||| ||| |||  ||||||||||||| |  |||| |||||  ||  |||||    ||| |||||    
T  29338147 aagtgtcaaaagcaaatggtataagagcatgttgattgttagaacacgttttctcatgtttggcagctttgcttgacacatcttttatgattgtttgtcc 29338048  T
Q  165 taccgtaaaaaccccgacc 183  Q
    |||||||||| ||||||||    
T  29338047 taccgtaaaagccccgacc 29338029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 180
Target Start/End: Original strand, 34168913 - 34169022
Alignment:
Q  71 caaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtcctaccgt 170  Q
    ||||| ||||| |||||||| ||||||| |||||  | ||   ||||||||||||| ||||||| ||||| |||| |||||| | ||  |||||||| ||    
T  34168913 caaaagcaaatggtataaaagcatgttgcttgtccaaacatgctttctcatgtttggccactttgcttgacgcaaattttagggttgcatgtcctacggt 34169012  T
Q  171 aaaaaccccg 180  Q
    |||| |||||    
T  34169013 aaaagccccg 34169022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 6356 - 6482
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| |||||||| ||||||||||||| ||||| ||||| || |||||||||||||||| |||  ||||||||||||| ||||||||||||| |||| |    
T  6356 tggtgctaggaaactgaaagtgtcaaaagcaaatggtatagaagcatgttgattgtcagaacacgctttctcatgtttggccactttacttgacgcaact 6455  T
Q  148 tttagtgctgtctgtcctaccgtaaaa 174  Q
    ||||| |||||||||||||| ||||||    
T  6456 tttagggctgtctgtcctacggtaaaa 6482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 500255 - 500375
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagt 153  Q
    ||||||||||||| ||||||||  |||| |||||||| |||||||||||||||| |||  ||||||||||||| ||||||| ||||| |||| ||||||     
T  500255 taggaaaccgaaaatgtcaaaagtaaatggtataaaagcatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcaacttttagg 500354  T
Q  154 gctgtctgtcctaccgtaaaa 174  Q
    |||||| ||||||||||||||    
T  500355 gctgtcggtcctaccgtaaaa 500375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 48 - 226
Target Start/End: Complemental strand, 35740071 - 35739894
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| |||||||| ||||||||||||| | ||| ||||||||||||||||||||||||| | |  ||||||||||||| ||||||| ||| |  ||| |    
T  35740071 tggtgctaggaaactgaaagtgtcaaaagctaattgtataaaaacatgttgattgtcagaacccgctttctcatgtttggccactttgcttaacacaact 35739972  T
Q  148 tttagtgctgtctgtcctaccgtaaaaaccccgacctttaatctcataagtggaaaaacccctttcaaatccacacatg 226  Q
    ||||| | |||||||||||||||||||  ||||||| |||||| ||  |||||  |||||||  |||| ||||||||||    
T  35739971 tttagggatgtctgtcctaccgtaaaaggcccgacc-ttaatcccactagtggtgaaaccccagtcaagtccacacatg 35739894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 64 - 174
Target Start/End: Original strand, 39434705 - 39434815
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtc 163  Q
    |||||||||||||||||| |||||||| |||||||||||||||| |||  ||||||||||||| ||||||| ||||| |||| |||||| |||  |||||    
T  39434705 aaagtgtcaaaaacaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcaacttttagagcttcctgtc 39434804  T
Q  164 ctaccgtaaaa 174  Q
    |||| ||||||    
T  39434805 ctactgtaaaa 39434815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 54 - 183
Target Start/End: Original strand, 3187997 - 3188127
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttag- 152  Q
    |||||| |||||||| |||||| ||||| |||||||| |||||||||||||||| |||  || |||||||||  ||||||| |||||||||| ||||||     
T  3187997 taggaagccgaaagtttcaaaagcaaatggtataaaagcatgttgattgtcagaacacgcttcctcatgttttgccactttgcttgatgcaacttttaga 3188096  T
Q  153 tgctgtctgtcctaccgtaaaaaccccgacc 183  Q
     |||  |||||||||||||||| ||||||||    
T  3188097 ggcttcctgtcctaccgtaaaagccccgacc 3188127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 24125050 - 24125176
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| ||||||| | ||| |||||||| ||||| |||||||| ||||||||||||||||||||  ||||||||||||| ||| ||| |||||||||  |    
T  24125050 tggtgctaggaaatcaaaattgtcaaaagcaaatggtataaaagcatgttgattgtcagagcacgctttctcatgtttggccattttgcttgatgcagct 24125149  T
Q  148 tttagtgctgtctgtcctaccgtaaaa 174  Q
    ||||| ||||  ||||| |||||||||    
T  24125150 tttagggctgcttgtcccaccgtaaaa 24125176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 48 - 200
Target Start/End: Original strand, 38815316 - 38815468
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| |||||| | ||||||||||||| ||||| |||||||| |||||||||||||||| |||  ||||||||||||| |||||||  |||  |    |    
T  38815316 tggtgctaggaagcggaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgtttggcgtggct 38815415  T
Q  148 tttagtgctgtctgtcctaccgtaaaaaccccgacctttaatctcataagtgg 200  Q
    ||||| ||||||||||||||| ||||| ||||||||  ||||| || ||||||    
T  38815416 tttagggctgtctgtcctaccataaaagccccgacccctaatcccacaagtgg 38815468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 48 - 226
Target Start/End: Complemental strand, 25021899 - 25021721
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| |||||| || ||| ||||||||  |||| ||||||||||||||||||||| ||| |||| |||||||| ||| |||||||| |||||  ||| |    
T  25021899 tggtgctaggaagccaaaaatgtcaaaagaaaatggtataaaaacatgttgattgtgagaacacactttctcatatttcaccactttgcttgacacaact 25021800  T
Q  148 tttagtgctgtctgtcctaccgtaaaaaccccgacctttaatctcataagtggaaaaacccctttcaaatccacacatg 226  Q
    ||||| ||||| |||| ||| ||||||||  |||||  ||||| || ||||||  |||| ||  |||| ||||||||||    
T  25021799 tttagggctgtatgtcatactgtaaaaacatcgacccctaatcccacaagtggtgaaactccggtcaagtccacacatg 25021721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 64 - 152
Target Start/End: Original strand, 28196230 - 28196318
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttag 152  Q
    |||||||||||||||||| ||||||||||||||| ||| ||| | |||| ||||||||||||  || |||||||||||||| |||||||    
T  28196230 aaagtgtcaaaaacaaatggtataaaaacatgtttattatcataacacactttctcatgtttagccgctttacttgatgcagtttttag 28196318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 6592603 - 6592723
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagt 153  Q
    |||||||| ||||||||||||| ||||| || ||||| |||||||||||| ||| |||  ||||||||||||| ||||||| ||||| |||  |||||      
T  6592603 taggaaactgaaagtgtcaaaagcaaatggtttaaaatcatgttgattgtgagaacacgctttctcatgtttggccactttgcttgacgcagcttttacg 6592702  T
Q  154 gctgtctgtcctaccgtaaaa 174  Q
     |||||| ||||| |||||||    
T  6592703 actgtctatcctatcgtaaaa 6592723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 8619860 - 8619962
Alignment:
Q  72 aaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtcctaccgta 171  Q
    |||||||||| |||||||| || ||||||||||| |  ||  ||| ||||||||||||| ||||||||| |||| |||||| ||||||||| ||| ||||    
T  8619860 aaaaacaaatggtataaaagcacgttgattgtcaaaatacgctttttcatgtttgaccattttacttgacgcaacttttagggctgtctgttctatcgta 8619959  T
Q  172 aaa 174  Q
    |||    
T  8619960 aaa 8619962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 37517163 - 37517242
Alignment:
Q  95 gttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtcctaccgtaaaa 174  Q
    |||||||||| || |||  ||||||||||||| ||||||| |||||||||  |||||| |||||||||||||| ||||||    
T  37517163 gttgattgtcggaacaccctttctcatgtttggccactttgcttgatgcagcttttagagctgtctgtcctacggtaaaa 37517242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 174
Target Start/End: Original strand, 4073573 - 4073683
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtc 163  Q
    |||||||||||  ||||| |||||||| |||||||||||  | | |||  |||||| ||||||||||||||  ||||||||| |||||| | |||||||     
T  4073573 aaagtgtcaaatgcaaattgtataaaatcatgttgattggtaaaacacgttttctcttgtttgaccactttgtttgatgcaacttttagggttgtctgtt 4073672  T
Q  164 ctaccgtaaaa 174  Q
    | |||||||||    
T  4073673 ccaccgtaaaa 4073683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 6618312 - 6618409
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaattttta 151  Q
    |||||||| ||||||||||||| ||||| || ||||| |||||||||||| ||| |||  |||||||||||| || ||| || |||| |||| |||||    
T  6618312 taggaaactgaaagtgtcaaaagcaaatggtttaaaatcatgttgattgtgagaacacgctttctcatgtttaactactctatttgacgcaactttta 6618409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 8882350 - 8882441
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    ||||| ||| |||| |||||| |||||||||||| || ||||| ||| |||||||||||| |||  ||||||||||||| ||||||| |||||    
T  8882350 tggtgctagaaaactgaaagt-tcaaaaacaaatggtttaaaagcatattgattgtcagaacacgctttctcatgtttggccactttgcttga 8882441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 10189571 - 10189691
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagt 153  Q
    |||||| || ||| |||||||  |||||  |||||||||||||||||||||||| ||   |||||| |||||||| |||||| |||  |||| ||||||     
T  10189571 taggaagccaaaaatgtcaaatgcaaatgatataaaaacatgttgattgtcagaacatgctttctcttgtttgactactttaattggcgcaacttttagg 10189670  T
Q  154 gctgtctgtcctaccgtaaaa 174  Q
      ||| ||||||||| |||||    
T  10189671 aatgtatgtcctaccataaaa 10189691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 10556361 - 10556283
Alignment:
Q  65 aagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgc 143  Q
    |||||||||| |||| |  |||||||||||||||||| |||||  |   |||||||||||||||||||||  |||||||    
T  10556361 aagtgtcaaatacaatttatataaaaacatgttgattttcagaatatgttttctcatgtttgaccactttctttgatgc 10556283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 37514249 - 37514298
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgt 103  Q
    |||||||  ||||||||||||| |||||||||||||  ||||||||||||    
T  37514249 taggaaattgaaagtgtcaaaagcaaatagtataaacgcatgttgattgt 37514298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 48 - 183
Target Start/End: Original strand, 32584623 - 32584758
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| ||||||||  |||||||||||| ||||| || ||||| ||| |||||||||||| |||  |||||||||||||||||||||  |||||||||||    
T  32584623 tggtgctaggaaacataaagtgtcaaaagcaaatggtgtaaaagcatcttgattgtcagaacacgttttctcatgtttgaccactttgtttgatgcaatt 32584722  T
Q  148 tttagtgctgtctgtcctaccgtaaaaaccccgacc 183  Q
    ||||| | ||  ||||||||||||||| ||||||||    
T  32584723 tttagggttgcatgtcctaccgtaaaatccccgacc 32584758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 56 - 167
Target Start/End: Complemental strand, 45613919 - 45613808
Alignment:
Q  56 ggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgc 155  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||| |||| | ||||||  ||| |||||||| |||| |||||| |     
T  45613919 ggaaaccgaaagtgtcaaaatcaaatggtataaaaacatgttgattgtcagaacacactttcccgtgtttggtcaccttacttgacgcaacttttagggt 45613820  T
Q  156 tgtctgtcctac 167  Q
    ||||||||||||    
T  45613819 tgtctgtcctac 45613808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 21326923 - 21326797
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| ||||||| |||||||||||||| ||||| |||||||| |||||||||||||||| |||  ||||||||||||| ||||||| ||||| ||   |    
T  21326923 tggtgctaggaaatcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcggct 21326824  T
Q  148 tttagtgctgtctgtcctaccgtaaaa 174  Q
    ||||| ||||| |||||||| ||||||    
T  21326823 tttagggctgtttgtcctacggtaaaa 21326797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 48 - 167
Target Start/End: Original strand, 982971 - 983090
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| ||| ||||||||||| |||||| ||||| |||||||| |||||||||||||||| ||| |||||||||||||| ||||||| ||||| |||  |    
T  982971 tggtgctagaaaaccgaaagtatcaaaagcaaatggtataaaagcatgttgattgtcagaacacgatttctcatgtttggccactttgcttgacgcagct 983070  T
Q  148 tttagtgctgtctgtcctac 167  Q
    ||||  |||| |||||||||    
T  983071 tttatggctgcctgtcctac 983090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 48 - 167
Target Start/End: Original strand, 19277315 - 19277434
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| |||||||||||||||||||||| ||||| |||||||| |||||||||||||||| |||  ||||||||||||| | ||||| ||||| |||  |    
T  19277315 tggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggctactttgcttgacgcagct 19277414  T
Q  148 tttagtgctgtctgtcctac 167  Q
    |||||  ||| |||||||||    
T  19277415 tttaggactgcctgtcctac 19277434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 28517356 - 28517195
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtc 163  Q
    |||||||||||| ||||| ||||||||||||||||||||||  | |||  ||||||||||||| ||||||| ||||| |||  |||||| | ||||||||    
T  28517356 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtctaaacacgctttctcatgtttggccactttgcttgacgcagcttttagggttgtctgtc 28517257  T
Q  164 ctaccgtaaaaaccccgacctttaatctcataagtggaaaaacccctttcaaatccacacat 225  Q
    |||| |||||| |||| |||  ||| | || ||||||  |||||||  |||| |||||||||    
T  28517256 ctactgtaaaagcccccacccctaaacccacaagtggtgaaaccccagtcaagtccacacat 28517195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 24527617 - 24527737
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagt 153  Q
    |||||||| ||||||||||||| ||||| |||||||| |||||||||||||||| |||  ||||||||||||  |||||||||||||  |   ||||||     
T  24527617 taggaaactgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgttttctcatgttttcccactttacttgacactgcttttagg 24527716  T
Q  154 gctgtctgtcctaccgtaaaa 174  Q
    |||| ||||||||| ||||||    
T  24527717 gctgcctgtcctacggtaaaa 24527737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 30216137 - 30216051
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||| | |||  |||||||| |||||||| ||| |||||    
T  30216137 taggaaaccgaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcaaaacacgctttctcatatttgaccattttgcttga 30216051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 40726552 - 40726479
Alignment:
Q  61 ccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccacttt 134  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||| | ||||||| |||||||    
T  40726552 ccgaaagtgtcaaaaacaaatggtataaaaacatgttgattgtcagaacacattttattatgtttggccacttt 40726479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 54 - 226
Target Start/End: Original strand, 22198014 - 22198186
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagt 153  Q
    |||||||||||||||| ||||| ||||| |||||||||||||||||||||  || |||| |||||||||||||  |||||| ||||| ||   ||||||     
T  22198014 taggaaaccgaaagtgacaaaagcaaatggtataaaaacatgttgattgttggaacacactttctcatgtttggtcactttgcttgacgccgcttttagg 22198113  T
Q  154 gctgtctgtcctaccgtaaaaaccccgacctttaatctcataagtggaaaaacccctttcaaatccacacatg 226  Q
    ||||   |||||||| |||||  ||||||   ||||| || ||||||  |||||||  ||||||| |||||||    
T  22198114 gctgcgcgtcctaccataaaaggcccgacacctaatcgcacaagtggcgaaaccccaatcaaatctacacatg 22198186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 54 - 226
Target Start/End: Complemental strand, 22239807 - 22239635
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagt 153  Q
    |||||||||||||||| ||||| ||||| |||||||||||||||||||||  || |||| |||||||||||||  |||||| ||||| ||   ||||||     
T  22239807 taggaaaccgaaagtgacaaaagcaaatggtataaaaacatgttgattgttggaacacactttctcatgtttggtcactttgcttgacgccgcttttagg 22239708  T
Q  154 gctgtctgtcctaccgtaaaaaccccgacctttaatctcataagtggaaaaacccctttcaaatccacacatg 226  Q
    ||||   |||||||| |||||  ||||||   ||||| || ||||||  |||||||  ||||||| |||||||    
T  22239707 gctgcgcgtcctaccataaaaggcccgacacctaatcgcacaagtggcgaaaccccaatcaaatctacacatg 22239635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 48 - 226
Target Start/End: Original strand, 43856896 - 43857074
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| ||||||||| ||| |||||||| ||||| |||||||  |||||||||||||| | |||  |||||||||| |  |||||||  |||| |||  |    
T  43856896 tggtgttaggaaaccaaaaatgtcaaaagcaaattgtataaacgcatgttgattgtcaaaacacgctttctcatgtctagccactttgattgacgcatct 43856995  T
Q  148 tttagtgctgtctgtcctaccgtaaaaaccccgacctttaatctcataagtggaaaaacccctttcaaatccacacatg 226  Q
    |||| || |||||||||||| |||||| ||||||||  ||||| || ||||||  |||||||  |||| ||||| ||||    
T  43856996 tttaatgttgtctgtcctactgtaaaagccccgacccctaatcccacaagtggtgaaacccccgtcaagtccacgcatg 43857074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 27521499 - 27521579
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccacttt 134  Q
    ||||||||| ||||||||||||  |||| |||||||  |||||||||||||||| |||  |||||||||||||||||||||    
T  27521499 taggaaaccaaaagtgtcaaaagtaaattgtataaatgcatgttgattgtcagaacacgttttctcatgtttgaccacttt 27521579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 226
Target Start/End: Original strand, 5825295 - 5825471
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| |||||  |||||||||||||||  |||| ||||||||||||||||||||||| | |||   || |||||||||  |||||| |||||||||  |    
T  5825295 tggtgctaggatgccgaaagtgtcaaaagtaaatggtataaaaacatgttgattgtcataacacgcattgtcatgtttg--cactttgcttgatgcagct 5825392  T
Q  148 tttagtgctgtctgtcctaccgtaaaaaccccgacctttaatctcataagtggaaaaacccctttcaaatccacacatg 226  Q
    ||||| |||  ||||||| |||||||| || |||||  ||| | || ||||||  |||||||  |||| ||||||||||    
T  5825393 tttagggcttcctgtcctgccgtaaaagcctcgacccctaaacccacaagtggtgaaaccccagtcaagtccacacatg 5825471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 42295269 - 42295210
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcaga 107  Q
    ||||| ||||||||||||||| | |||||||||| |||||||||||||||||||||||||    
T  42295269 tggtgttaggaaaccgaaagtataaaaaacaaatggtataaaaacatgttgattgtcaga 42295210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 64 - 174
Target Start/End: Original strand, 4501296 - 4501406
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtc 163  Q
    |||||||||||| |||||  ||||||| |||||||||||||||| |||  ||||||||||||| |||||||  |||| |||  |||||| | ||| ||||    
T  4501296 aaagtgtcaaaagcaaattatataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgtttgacgcagcttttagggttgtttgtc 4501395  T
Q  164 ctaccgtaaaa 174  Q
    |||| ||||||    
T  4501396 ctacggtaaaa 4501406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 178
Target Start/End: Complemental strand, 9281196 - 9281087
Alignment:
Q  68 tgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtcctac 167  Q
    |||||||  |||||||||||||| |||||||||||| ||| |||  ||||||||||||| | | ||| |||||||||  |||||| | ||||||||||||    
T  9281196 tgtcaaatccaaatagtataaaagcatgttgattgttagaacacgctttctcatgtttg-ctagtttgcttgatgcagcttttagggttgtctgtcctac 9281098  T
Q  168 cgtaaaaaccc 178  Q
     ||||||||||    
T  9281097 tgtaaaaaccc 9281087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 178
Target Start/End: Complemental strand, 9292167 - 9292058
Alignment:
Q  68 tgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtcctac 167  Q
    |||||||  |||||||||||||| |||||||||||| ||| |||  ||||||||||||| | | ||| |||||||||  |||||| | ||||||||||||    
T  9292167 tgtcaaatccaaatagtataaaagcatgttgattgttagaacacgctttctcatgtttg-ctagtttgcttgatgcagcttttagggttgtctgtcctac 9292069  T
Q  168 cgtaaaaaccc 178  Q
     ||||||||||    
T  9292068 tgtaaaaaccc 9292058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 48539203 - 48539261
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcag 106  Q
    ||||| ||| |||||||||||||||||| ||||| |||||||| |||||||||||||||    
T  48539203 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 48539261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 1249674 - 1249734
Alignment:
Q  114 tttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtcctaccgtaaaa 174  Q
    |||||||||||||||||||||| |||| |||  |||||| ||||||| |||||||||||||    
T  1249674 tttctcatgtttgaccactttatttgacgcaggttttagggctgtctatcctaccgtaaaa 1249734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 174
Target Start/End: Complemental strand, 25186999 - 25186895
Alignment:
Q  70 tcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtcctaccg 169  Q
    |||||| ||||| ||| ||||||||||||||| || || |||  ||||||||||| |||||||||||||||  ||| |||||| | | | |||||||| |    
T  25186999 tcaaaagcaaatggtagaaaaacatgttgattatcggaacacgctttctcatgttagaccactttacttgacacaacttttagggttttatgtcctacgg 25186900  T
Q  170 taaaa 174  Q
    |||||    
T  25186899 taaaa 25186895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 64 - 174
Target Start/End: Original strand, 3676677 - 3676788
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgct-gtctgt 162  Q
    |||||||||||| ||||| |||||||| ||| ||||| || ||| |||  ||||| ||||||||||||||| ||||| |||  |||||| ||| | ||||    
T  3676677 aaagtgtcaaaagcaaatggtataaaagcatattgatagtaagaacacgctttctgatgtttgaccactttgcttgacgcagcttttagggctggcctgt 3676776  T
Q  163 cctaccgtaaaa 174  Q
    ||||| ||||||    
T  3676777 cctacggtaaaa 3676788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 2904407 - 2904512
Alignment:
Q  68 tgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtcctac 167  Q
    ||||| ||||||||  ||||||| ||||||||||||| || ||   ||||||||||||||| | ||| ||||| | || ||||||  |||||| ||||||    
T  2904407 tgtcacaaacaaatgatataaaatcatgttgattgtcggaacatgctttctcatgtttgactattttgcttgacgtaacttttaggactgtctatcctac 2904506  T
Q  168 cgtaaa 173  Q
    ||||||    
T  2904507 cgtaaa 2904512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 34067949 - 34067869
Alignment:
Q  45 ctttggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttg 126  Q
    |||||||  ||||||||| ||||||||||| |||||| | ||| ||| ||||||||||||| | |||| |||||||||||||    
T  34067949 ctttggtactaggaaaccaaaagtgtcaaatacaaatggcatagaaa-atgttgattgtcaaaacacactttctcatgtttg 34067869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 10905140 - 10905231
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    ||||| |||| |||| |||||||||||| ||||| |||| ||| |||||||| ||||||| |||  |||||||| |||| ||||||| |||||    
T  10905140 tggtgctaggcaaccaaaagtgtcaaaagcaaatggtat-aaagcatgttgagtgtcagaacactttttctcatatttggccactttgcttga 10905231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 7637579 - 7637505
Alignment:
Q  65 aagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    ||||||||||  ||||| |||||||| | | ||||| ||||||||||| ||||||||| ||||||||||| |||||    
T  7637579 aagtgtcaaacgcaaatggtataaaagcttattgatcgtcagagcacactttctcatg-ttgaccactttgcttga 7637505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 47679153 - 47679220
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcat 121  Q
    ||||||||||||| |||||||  ||||||||||||||  || |||||||| ||| |||| ||||||||    
T  47679153 taggaaaccgaaaatgtcaaacgcaaatagtataaaagtatattgattgtgagaacacactttctcat 47679220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 10032234 - 10032192
Alignment:
Q  70 tcaaaaacaaatagtataaaaacatgttgattgtcagagcaca 112  Q
    |||||| |||||||||||||||||| |||||||||||| ||||    
T  10032234 tcaaaagcaaatagtataaaaacatattgattgtcagaacaca 10032192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 26770453 - 26770523
Alignment:
Q  82 agtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttag 152  Q
    ||||||||| ||| | |||||||||| |||  |||||||||||| ||||||||| |||| ||||| |||||    
T  26770453 agtataaaagcatatagattgtcagaacacgttttctcatgttttaccactttatttgacgcaatctttag 26770523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 175
Target Start/End: Original strand, 34772818 - 34772928
Alignment:
Q  63 gaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgt 162  Q
    |||||| |||||| ||||| |||||||||||| || |||||| || |||| |||||||| |||| | |||||  ||||  ||| |||||| |||| || |    
T  34772818 gaaagtttcaaaagcaaatggtataaaaacatattaattgtccgaacacactttctcatatttggctactttgattga--caacttttagagctgcctat 34772915  T
Q  163 cctaccgtaaaaa 175  Q
    | |||||||||||    
T  34772916 cataccgtaaaaa 34772928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 24567036 - 24566960
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    ||||||||||| | ||| | || |||||||  |||||||||  | |||  |||||||||||||||||||||||||||    
T  24567036 aaagtgtcaaacataaacaatacaaaaacactttgattgtctaaacaccctttctcatgtttgaccactttacttga 24566960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 48 - 179
Target Start/End: Original strand, 4473083 - 4473214
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||| ||||| || ||| |||  ||| ||||||||   |||||| ||||| ||||||    
T  4473083 tggtgctaggaagccgaaagtgtcaaaaacaaatagtataaaaacatattgatggttagaacacgctttttcatgttttgacactttgcttgacgcaatt 4473182  T
Q  148 tttagtgctgtctgtcctaccgtaaaaacccc 179  Q
    ||||  ||| ||||||||||||||||||||||    
T  4473183 tttaaggctctctgtcctaccgtaaaaacccc 4473214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 54 - 207
Target Start/End: Complemental strand, 39583308 - 39583155
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagt 153  Q
    |||||||||||||||||| |||||||||  ||||||| |||||||||||||||| |||  ||||||||||||| ||||||| ||||| |||  ||||||     
T  39583308 taggaaaccgaaagtgtcgaaaacaaatgatataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcagcttttagg 39583209  T
Q  154 gctgtctgtcctaccgtaaaaaccccgacctttaatctcataagtggaaaaacc 207  Q
    |||| || ||||||| ||||   ||||||| |||||| || |||||| ||||||    
T  39583208 gctgcctatcctaccataaatggcccgacccttaatcccacaagtggtaaaacc 39583155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 48 - 162
Target Start/End: Complemental strand, 37133084 - 37132970
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| || |||||||||||||| |||||||||| ||||||||||||||||||||||||| |||  |||||||||||| |||||||| ||||| | |  |    
T  37133084 tggtgctaagaaaccgaaagtgtaaaaaacaaatggtataaaaacatgttgattgtcagaacacgctttctcatgtttaaccactttgcttgacgtagct 37132985  T
Q  148 tttagtgctgtctgt 162  Q
    ||||| |||||||||    
T  37132984 tttagggctgtctgt 37132970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 57 - 174
Target Start/End: Original strand, 44198798 - 44198915
Alignment:
Q  57 gaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgct 156  Q
    ||||||||||||||||||| ||||| |||||||| |||||||||| ||||| |||  ||||||||||||| ||||||| ||||| |||| |||||| |||    
T  44198798 gaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattctcagaacacgctttctcatgtttggccactttgcttgacgcaacttttagagct 44198897  T
Q  157 gtctgtcctaccgtaaaa 174  Q
    | ||| ||||| ||||||    
T  44198898 gcctgacctacggtaaaa 44198915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 54 - 226
Target Start/End: Original strand, 7900886 - 7901058
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagt 153  Q
    |||||| ||||||||||||||||||||| |||||||| ||||||||||||||||  ||  ||||||||||| | | | ||| ||||| ||| |||||||     
T  7900886 taggaagccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcagaaaacgctttctcatgttcggctattttgcttgacgcagtttttagg 7900985  T
Q  154 gctgtctgtcctaccgtaaaaaccccgacctttaatctcataagtggaaaaacccctttcaaatccacacatg 226  Q
    | | || ||||||||||||||  ||| |||  ||||| || ||||||  |||||||  |||| ||||||||||    
T  7900986 gatatccgtcctaccgtaaaagacccaacccctaatcccacaagtggtgaaaccccagtcaagtccacacatg 7901058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 53785731 - 53785823
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    ||||| |||||||||||||||||||||| ||||| |||||||| |||||||||||||||| |||  |||||| |||||| |||| ||||||||    
T  53785731 tggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcgtgtttggccaccttacttga 53785823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 49017986 - 49018063
Alignment:
Q  49 ggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttg 126  Q
    |||| ||||||||||||||||| ||||| |||| ||||||||||||||||||||| ||| |||| |||||||||||||    
T  49017986 ggtgctaggaaaccgaaagtgtaaaaaaaaaatggtataaaaacatgttgattgttagaacacactttctcatgtttg 49018063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 38670949 - 38670874
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    |||||||||||||||||| |||||||| |||||||||||||||| |||  |||||||||||||| ||||||||||||    
T  38670949 aaagtgtcaaaaacaaattgtataaaagcatgttgattgtcagaacacgctttctcatgtttga-cactttacttga 38670874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 47 - 174
Target Start/End: Original strand, 13582531 - 13582657
Alignment:
Q  47 ttggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaat 146  Q
    |||||| ||||||| | ||||||| |||||||||| ||||||||||| ||||||||||||| |||| ||||| |||||||| ||||||  |||| |||      
T  13582531 ttggtgctaggaaatcaaaagtgt-aaaaacaaatggtataaaaacacgttgattgtcagaacacactttcttatgtttgatcactttgattgacgcagc 13582629  T
Q  147 ttttagtgctgtctgtcctaccgtaaaa 174  Q
    |||||| ||||  |||||||| ||||||    
T  13582630 ttttagggctgcttgtcctacggtaaaa 13582657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 64 - 183
Target Start/End: Complemental strand, 46940839 - 46940720
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtc 163  Q
    |||||||||||||||||| |||||||| ||||||||||||| || ||   ||||| ||||||| ||||||| ||||| |||  |||||| | ||||||||    
T  46940839 aaagtgtcaaaaacaaatggtataaaagcatgttgattgtcggaacatgttttctaatgtttggccactttgcttgacgcatcttttagagttgtctgtc 46940740  T
Q  164 ctaccgtaaaaaccccgacc 183  Q
    ||||| ||||| || |||||    
T  46940739 ctaccataaaatcctcgacc 46940720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 52741597 - 52741519
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttg 126  Q
    ||||| ||||||||| |||||||||||| ||||| |||||||| |||||||||||||||| |||  |||||||||||||    
T  52741597 tggtgctaggaaaccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttg 52741519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 49 - 174
Target Start/End: Complemental strand, 38978883 - 38978758
Alignment:
Q  49 ggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaattt 148  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| |  ||  |||| ||||| | |||| ||| |||||  ||| ||    
T  38978883 ggtgctaggaaaccaaaagtgtcaaaaacaaatagtataaaaacatattgattgtcaaaatacgttttcacatgtctaaccaatttgcttgacacaactt 38978784  T
Q  149 ttagtgctgtctgtcctaccgtaaaa 174  Q
    |||| | ||| | |||||||||||||    
T  38978783 ttagggttgtatttcctaccgtaaaa 38978758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 173
Target Start/End: Original strand, 26772786 - 26772905
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagt 153  Q
    |||||| || |||||||||||| ||||| |||||||| |||||||||||||||| |||  ||||| ||||||| ||||||| |||||  ||| ||||||     
T  26772786 taggaagccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgttttctgatgtttggccactttgcttgacacaacttttagg 26772885  T
Q  154 gctgtctgtcctaccgtaaa 173  Q
    | ||  |||||||| |||||    
T  26772886 gatgcatgtcctactgtaaa 26772905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 32546814 - 32546901
Alignment:
Q  45 ctttggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccact 132  Q
    |||||||| |||||||| ||||||||||||| ||||| ||||||||  |||||||||||| || |||  ||||||||||||| |||||    
T  32546814 ctttggtgctaggaaactgaaagtgtcaaaagcaaatggtataaaagtatgttgattgtccgaacacgctttctcatgtttggccact 32546901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 174
Target Start/End: Complemental strand, 35484758 - 35484651
Alignment:
Q  67 gtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtccta 166  Q
    ||||||||  ||||||||| |||||||||||||||||  || || | |||||||||||||||||||||||||||   | ||||||  | ||| |||||||    
T  35484758 gtgtcaaatgcaaatagtacaaaaacatgttgattgttggaacatattttctcatgtttgaccactttacttgacatagtttttaaagttgtttgtccta 35484659  T
Q  167 ccgtaaaa 174  Q
    ||||||||    
T  35484658 ccgtaaaa 35484651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 7502097 - 7502004
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaa-catgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    ||||| ||||||||| ||| ||||||||  |||| ||||||||| ||||||||||||  || |||  |||||||||||||||||||||||||||    
T  7502097 tggtgctaggaaaccaaaaatgtcaaaagaaaatggtataaaaaacatgttgattgttcgaacacgctttctcatgtttgaccactttacttga 7502004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 3443391 - 3443271
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagt 153  Q
    |||||||| ||||||||||| |  |||| |||||||| |||||||||||| |||  ||| ||| ||||||||| ||| ||| ||||| |||| ||||||     
T  3443391 taggaaactgaaagtgtcaacagaaaatggtataaaagcatgttgattgttagaatacactttttcatgtttggccattttgcttgacgcaacttttagg 3443292  T
Q  154 gctgtctgtcctaccgtaaaa 174  Q
     || ||||||||| |||||||    
T  3443291 actctctgtcctatcgtaaaa 3443271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 5338671 - 5338794
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagca---caatttctcatgtttgaccactttacttgatgcaattttt 150  Q
    |||||| ||||||||||||||| ||||| |||||||| |||||||| |||||  |||   || ||||||||||||| | | |||  |||| |||| | ||    
T  5338671 taggaagccgaaagtgtcaaaagcaaattgtataaaagcatgttgactgtcaacgcaacgcactttctcatgtttggcaattttgtttgacgcaactctt 5338770  T
Q  151 agtgctgtctgtcctaccgtaaaa 174  Q
    || ||| |||||||||||||||||    
T  5338771 agggctttctgtcctaccgtaaaa 5338794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 26856841 - 26856755
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    ||||||| |||||| ||||||| || || |||||||| |||||||||||||| | |||  ||| |||| |||||||| |||||||||    
T  26856841 taggaaatcgaaagcgtcaaaagcagatggtataaaagcatgttgattgtcacaacacgctttatcatatttgaccattttacttga 26856755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 64 - 168
Target Start/End: Original strand, 38146094 - 38146198
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtc 163  Q
    |||||||||||   |||| ||||||||||||||||||||||| | |||  | ||||  |||||||||||||  |||||||   |||||| ||||  ||||    
T  38146094 aaagtgtcaaatgtaaatggtataaaaacatgttgattgtcaaaacacgttgtctcgcgtttgaccactttgattgatgccgcttttagggctgcatgtc 38146193  T
Q  164 ctacc 168  Q
    |||||    
T  38146194 ctacc 38146198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 52411961 - 52411917
Alignment:
Q  63 gaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcaga 107  Q
    ||||||||||||| ||||| | |||||| ||||||||||||||||    
T  52411961 gaaagtgtcaaaagcaaatggaataaaagcatgttgattgtcaga 52411917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 64 - 226
Target Start/End: Original strand, 53619624 - 53619786
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtc 163  Q
    |||||||||||||||||| |||||||| |||||||||||||||| |||  ||||||||||||| ||||||| ||||| |||  |||||| | || |||||    
T  53619624 aaagtgtcaaaaacaaatggtataaaagcatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcagcttttagggttgcctgtc 53619723  T
Q  164 ctaccgtaaaaaccccgacctttaatctcataagtggaaaaacccctttcaaatccacacatg 226  Q
    |||| |||||| |||| |||| ||| | || ||||||  |||||||  |||| ||||||||||    
T  53619724 ctactgtaaaagcccccacctctaaacccacaagtggtgaaaccccagtcaagtccacacatg 53619786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 49 - 166
Target Start/End: Complemental strand, 30940822 - 30940706
Alignment:
Q  49 ggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaattt 148  Q
    |||| ||||||| |||||||||||||| ||| | |||||||| |||||||||||||||| |||  ||||||||||||||||||||||||||| |||| ||    
T  30940822 ggtgctaggaaatcgaaagtgtcaaaagcaa-tggtataaaagcatgttgattgtcagaacacgctttctcatgtttgaccactttacttgacgcaactt 30940724  T
Q  149 ttagtgctgtctgtccta 166  Q
    |||| | |||||||||||    
T  30940723 ttagggttgtctgtccta 30940706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 62 - 174
Target Start/End: Complemental strand, 48656981 - 48656869
Alignment:
Q  62 cgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctg 161  Q
    |||||||||||||||||||| |||||||||||| ||||||| || | |||| ||||||||||||| ||| ||||||||||| || |||||| ||||||||    
T  48656981 cgaaagtgtcaaaaacaaatggtataaaaacattttgattgacataacacactttctcatgtttgtccattttacttgatgaaacttttagggctgtctg 48656882  T
Q  162 tcctaccgtaaaa 174  Q
    || ||| ||||||    
T  48656881 tcatactgtaaaa 48656869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 50000995 - 50000879
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaa-catgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgt 162  Q
    |||||||||||| ||||| |||| |||| |||||||||||||||| |||  ||||||||||||||||||||| ||||| |||  |||||| |||||||||    
T  50000995 aaagtgtcaaaagcaaattgtattaaaagcatgttgattgtcagaacacgctttctcatgtttgaccactttgcttgacgcagcttttagagctgtctgt 50000896  T
Q  163 cctaccgtaaaaacccc 179  Q
    |||||||||||| ||||    
T  50000895 cctaccgtaaaagcccc 50000879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 62 - 188
Target Start/End: Complemental strand, 55933533 - 55933407
Alignment:
Q  62 cgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctg 161  Q
    |||||||||||||| ||||| |||||||| |||||||||||| ||| || | ||||||||||||| |||||||  |||| |||| |||||| |||| |||    
T  55933533 cgaaagtgtcaaaagcaaatggtataaaagcatgttgattgttagaacaaactttctcatgtttggccactttgtttgacgcaacttttagggctgactg 55933434  T
Q  162 tcctaccgtaaaaaccccgacctttaa 188  Q
    ||||||||||||| ||| |||| ||||    
T  55933433 tcctaccgtaaaagccctgacccttaa 55933407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 54 - 167
Target Start/End: Original strand, 132413 - 132526
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagt 153  Q
    ||||||||||||||||| |||||||||| |||||||| |||||||||||||||| ||| |||||||||||||  ||| ||| ||||| |||  ||||||     
T  132413 taggaaaccgaaagtgtaaaaaacaaatggtataaaagcatgttgattgtcagaacacgatttctcatgttttgccattttgcttgacgcagcttttagg 132512  T
Q  154 gctgtctgtcctac 167  Q
    |||| |||||||||    
T  132513 gctgcctgtcctac 132526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 62 - 181
Target Start/End: Complemental strand, 12918443 - 12918324
Alignment:
Q  62 cgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctg 161  Q
    ||||||||||||||  |||||||||||||   |||||||||||||| ||| |||||| |||||||||||||||  |||| |||| |||||| | ||| ||    
T  12918443 cgaaagtgtcaaaagtaaatagtataaaagtgtgttgattgtcagaacacgatttcttatgtttgaccactttgtttgacgcaacttttagggttgtttg 12918344  T
Q  162 tcctaccgtaaaaaccccga 181  Q
    ||||||||||||| ||||||    
T  12918343 tcctaccgtaaaagccccga 12918324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 31847115 - 31847240
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagt 153  Q
    |||||| || |||||||||||| ||||| ||| ||||||||||||| ||||||| ||   ||||||||||||||||||||| ||||| |||  ||||||     
T  31847115 taggaagccaaaagtgtcaaaagcaaatggtaaaaaaacatgttgactgtcagaacatggtttctcatgtttgaccactttgcttgacgcagcttttagg 31847214  T
Q  154 gctgtctgtcctaccgtaaaaacccc 179  Q
    |||| ||||||||| |||||| ||||    
T  31847215 gctgcctgtcctactgtaaaagcccc 31847240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 56462191 - 56462088
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||| |||  ||| ||||||||| |||||||  |||| |||| |    
T  56462191 tggtgctaggaaaccaaaagtgtctaaaacaaatggtataaaaacatgttgattgtcagaacacgctttatcatgtttg-ccactttgtttgacgcaact 56462093  T
Q  148 tttag 152  Q
    |||||    
T  56462092 tttag 56462088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 34107781 - 34107675
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcaca--atttctcatgtttgaccactttacttgatgcaa 145  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| || || ||||   ||||||||||||| ||||||   |||| ||||    
T  34107781 tggtgctaggaaatcgaaagtgtcaaaaacaaatggtataaaaacatgttgattatctgaacacacgttttctcatgtttggccacttcgtttgacgcaa 34107682  T
Q  146 tttttag 152  Q
    |||||||    
T  34107681 tttttag 34107675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 600777 - 600651
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| |||||||||||||||| ||||| ||||| |||||||| |||||| ||||| ||| |||  |||||||||||||  |||||| |||||   || |    
T  600777 tggtgttaggaaaccgaaagtgacaaaagcaaatggtataaaagcatgttaattgttagaacacgttttctcatgtttggtcactttgcttgacataact 600678  T
Q  148 tttagtgctgtctgtcctaccgtaaaa 174  Q
    ||||| | |||||||||||| ||||||    
T  600677 tttagggttgtctgtcctacagtaaaa 600651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 7536656 - 7536599
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtca 105  Q
    ||||| |||||||| |||| |||||||||||||| |||||||||||||||||||||||    
T  7536656 tggtgctaggaaactgaaattgtcaaaaacaaattgtataaaaacatgttgattgtca 7536599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 23255747 - 23255828
Alignment:
Q  69 gtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaattttt 150  Q
    ||||||||||||| |||||||| |||||| ||||||||| |||  ||||||||||||| ||||||| ||||| |||| ||||    
T  23255747 gtcaaaaacaaatggtataaaagcatgttaattgtcagaacacgctttctcatgtttggccactttgcttgacgcaactttt 23255828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 16957574 - 16957642
Alignment:
Q  58 aaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttg 126  Q
    |||| ||||||||||||| ||||| ||||| || |||||||||| |||||||||| |||||||||||||    
T  16957574 aaactgaaagtgtcaaaagcaaatggtatataagcatgttgattatcagagcacactttctcatgtttg 16957642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 25504323 - 25504441
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagt 153  Q
    ||||||||| ||| |||||||| ||||  |||||||||||||| |||||| ||| |||  ||||||||||||||||| ||| ||||||||||  |||||     
T  25504323 taggaaaccaaaaatgtcaaaagcaaacggtataaaaacatgtcgattgttagaacacgttttctcatgtttgacca-tttgcttgatgcaa-ctttagg 25504420  T
Q  154 gctgtctgtcctaccgtaaaa 174  Q
    | || ||||| ||||||||||    
T  25504421 gttgcctgtcataccgtaaaa 25504441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 50463024 - 50462908
Alignment:
Q  55 aggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtg 154  Q
    |||||| | |||||||||||| ||||| |||| ||| ||||||||||||| ||  ||| |||||||||||||  ||  || ||||| |||| |||||  |    
T  50463024 aggaaatcaaaagtgtcaaaagcaaatggtatgaaagcatgttgattgtcggaagacactttctcatgtttggtcatcttgcttgacgcaacttttaagg 50462925  T
Q  155 ctgtctgtcctaccgta 171  Q
    |||||||||||||||||    
T  50462924 ctgtctgtcctaccgta 50462908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 3330024 - 3330079
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagc 109  Q
    |||||| || |||||||||||| |||||||||||||| ||||||||||||||||||    
T  3330024 taggaagccaaaagtgtcaaaagcaaatagtataaaagcatgttgattgtcagagc 3330079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 50483281 - 50483222
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcaga 107  Q
    ||||| |||||||||||||||||| ||| ||||| |||||||| ||||||||||||||||    
T  50483281 tggtgctaggaaaccgaaagtgtcgaaagcaaatggtataaaatcatgttgattgtcaga 50483222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 12053435 - 12053561
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| |||||||  ||||| ||| ||| |||||  ||||||||| | |||||||| ||| ||| |||||||||||||||| |||||  |||| |||  |    
T  12053435 tggtgctaggaaattgaaagagtcgaaagcaaatgatataaaaacgttttgattgttagaacacgatttctcatgtttgacaactttgtttgacgcagct 12053534  T
Q  148 tttagtgctgtctgtcctaccgtaaaa 174  Q
    ||||| ||||| |||||||| ||||||    
T  12053535 tttagagctgtttgtcctactgtaaaa 12053561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 134
Target Start/End: Complemental strand, 46440968 - 46440888
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccacttt 134  Q
    |||||| ||||||||||||||| |||||  ||||||||| |||| ||||| ||| |||| ||| | |||||||||||||||    
T  46440968 taggaagccgaaagtgtcaaaagcaaatgatataaaaacgtgttaattgttagaacacacttttttatgtttgaccacttt 46440888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 28739927 - 28740020
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaa-acatgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    ||||| ||||||  ||||||||||||| | |||| |||||||| ||||||| | ||||| | ||||||||||| |||||| |||||||| ||||    
T  28739927 tggtgttaggaagtcgaaagtgtcaaacataaatggtataaaacacatgttaactgtcacaacacaatttctcgtgtttggccactttatttga 28740020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 24719972 - 24720015
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcaga 107  Q
    ||||||||||| ||||||  ||||||||||||||||||||||||    
T  24719972 aaagtgtcaaacacaaatgatataaaaacatgttgattgtcaga 24720015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 26521510 - 26521636
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| ||||||||| |||||||  ||| || ||  ||||||| |||||||||||||| | |||  ||| ||||||||  |||||||  |||| |||| |    
T  26521510 tggtgctaggaaaccaaaagtgttgaaagcatatgatataaaagcatgttgattgtcataacacgttttttcatgtttagccactttgtttgacgcaact 26521609  T
Q  148 tttagtgctgtctgtcctaccgtaaaa 174  Q
    ||||| | ||| ||||||||| |||||    
T  26521610 tttagggttgtttgtcctaccataaaa 26521636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 34536996 - 34536930
Alignment:
Q  69 gtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccacttta 135  Q
    |||||| |||||||||||||||| ||||||||||||| | |||  ||| |||||||||  |||||||    
T  34536996 gtcaaacacaaatagtataaaaatatgttgattgtcataacacgttttttcatgtttggtcacttta 34536930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 41440151 - 41440081
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccacttt 134  Q
    |||||||||||   |||||||||||||||| ||||| ||| ||| |||| ||||| ||||||||| |||||    
T  41440151 aaagtgtcaaatgtaaatagtataaaaacacgttgaatgttagaacacattttcttatgtttgactacttt 41440081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 43849436 - 43849350
Alignment:
Q  45 ctttggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccac 131  Q
    |||||||  |||||| || ||||||||||| ||||||||||||||| ||||||| || || || |||  |||||| |||||| ||||    
T  43849436 ctttggttctaggaagccaaaagtgtcaaacacaaatagtataaaagcatgttggttatctgaacacgctttctcgtgtttggccac 43849350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 29169878 - 29169752
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| |||||||||||||||||||||| ||||| |||||||| |||||||||||||||| |||  |||||| |||||| |||| ||||||||  ||| |    
T  29169878 tggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgttttctcgtgtttggccaccttacttgacacaact 29169779  T
Q  148 tttagtgctgtctgtcctaccgtaaaa 174  Q
    || || |||||||||||||| ||||||    
T  29169778 ttaagggctgtctgtcctacggtaaaa 29169752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 54 - 226
Target Start/End: Original strand, 34644594 - 34644766
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagt 153  Q
    |||||| ||||||||||||||||||||| |||||||| ||||| | |||||||| |||  ||||||||||||| |||||||  |||| |||| ||||||     
T  34644594 taggaagccgaaagtgtcaaaaacaaatggtataaaagcatgtaggttgtcagaacacgctttctcatgtttggccactttgtttgacgcaacttttagg 34644693  T
Q  154 gctgtctgtcctaccgtaaaaaccccgacctttaatctcataagtggaaaaacccctttcaaatccacacatg 226  Q
    | ||  ||||||||||||||| ||||||||  ||| | || ||||||  |||||||  |||| ||||||||||    
T  34644694 gttgcttgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaaccccagtcaagtccacacatg 34644766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 46 - 173
Target Start/End: Complemental strand, 4862076 - 4861949
Alignment:
Q  46 tttggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaa 145  Q
    ||||||| ||||||| |||||||||||||| ||||| ||||||||  |||||| ||||||||  ||  ||||||||||||||||| ||||||||| ||||    
T  4862076 tttggtgttaggaaatcgaaagtgtcaaaagcaaattgtataaaagtatgttgcttgtcagaagacgctttctcatgtttgaccattttacttgacgcaa 4861977  T
Q  146 tttttagtgctgtctgtcctaccgtaaa 173  Q
     |||||  ||||||||||||||| ||||    
T  4861976 cttttaaggctgtctgtcctaccataaa 4861949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 28041212 - 28041126
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccacttt 134  Q
    ||||| |||||||||||||||||||||| ||||| |||||||||| |||||||||||||| |||| ||||||||||||| |||||||    
T  28041212 tggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaaacctgttgattgtcagaacacactttctcatgtttggccacttt 28041126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 19035469 - 19035595
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| |||||||||| |||||||||||  |||| |||||||| |||||||||||||||| |||  ||||||||||||| ||||||| ||||| |||  |    
T  19035469 tggtgctaggaaaccgtaagtgtcaaaagtaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcagct 19035568  T
Q  148 tttagtgctgtctgtcctaccgtaaaa 174  Q
    ||||| |||| ||| ||||| ||||||    
T  19035569 tttagggctgcctgccctacggtaaaa 19035595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 21473025 - 21473117
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    ||||| |||||||| | ||||||||||| ||||| ||||||||||||||||||||||||| |||  ||||||||||||| ||| |||||||||    
T  21473025 tggtgctaggaaactgcaagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacacgctttctcatgtttggccattttacttga 21473117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 45659733 - 45659641
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    ||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||| |||  |||||| |||||| |||| ||||||||    
T  45659733 tggtgataggaaatcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcgtgtttggccaccttacttga 45659641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 36486908 - 36487011
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||||||  ||||| |||||||||||| |||||  |||||||| || |||||||||| | |||  |||||||| |||||||||||||||||||||||||    
T  36486908 tggtgataaaaaaccaaaagtgtcaaaagcaaattatataaaaagatattgattgtcaaaacacgctttctcatatttgaccactttacttgatgcaatt 36487007  T
Q  148 ttta 151  Q
    ||||    
T  36487008 ttta 36487011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 20259882 - 20259790
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    ||||| || ||||||||||||||||| || |||| ||||||||||||||||||||||||| |||  |||||||| ||| |||||||| |||||    
T  20259882 tggtgctaagaaaccgaaagtgtcaacaataaatggtataaaaacatgttgattgtcagaacacgctttctcatttttaaccactttgcttga 20259790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 50161466 - 50161376
Alignment:
Q  84 tataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtcctaccgtaaaa 174  Q
    ||||||| |||||||||||| ||| |||  ||||||||||||| ||||||| ||||| |||| |||||| | |||||||||||||||||||    
T  50161466 tataaaagcatgttgattgtgagaacacgctttctcatgtttgtccactttgcttgacgcaacttttagggttgtctgtcctaccgtaaaa 50161376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 49 - 174
Target Start/End: Complemental strand, 25375917 - 25375792
Alignment:
Q  49 ggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaattt 148  Q
    ||||||||||| || |||||||||| | ||||| |||||||||||||||||| || ||| ||   ||| |||||||||  |||||| ||||| |||| ||    
T  25375917 ggtgataggaagccaaaagtgtcaatagcaaatggtataaaaacatgttgatggtaagaacatgttttgtcatgtttggtcactttgcttgacgcaactt 25375818  T
Q  149 ttagtgctgtctgtcctaccgtaaaa 174  Q
    || | | |||||||||||||||||||    
T  25375817 ttggagttgtctgtcctaccgtaaaa 25375792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 22346923 - 22347009
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    |||||||||||||||||||||| ||||  |||||||  |||||||||||||||| |||  |||||||| |||| ||||||| |||||    
T  22346923 taggaaaccgaaagtgtcaaaagcaaaaggtataaacgcatgttgattgtcagaacacgctttctcatatttggccactttgcttga 22347009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 31737394 - 31737316
Alignment:
Q  62 cgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||  |   ||||||||||||| ||||||| |||||    
T  31737394 cgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcagaatatgttttctcatgtttggccactttgcttga 31737316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 64 - 180
Target Start/End: Original strand, 16500072 - 16500188
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtc 163  Q
    |||||||||||| |||||||||||||  |||||| ||||| ||| ||   ||||| || |||| ||||||||| ||| |||| ||||||   ||||||||    
T  16500072 aaagtgtcaaaagcaaatagtataaaggcatgttaattgttagaacatgttttcttatatttggccactttacgtgacgcaacttttaggattgtctgtc 16500171  T
Q  164 ctaccgtaaaaaccccg 180  Q
    ||||||||||| |||||    
T  16500172 ctaccgtaaaagccccg 16500188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 2898724 - 2898823
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcaga----gcacaatttctcatgtttgaccactttacttgatgc 143  Q
    ||||| ||||||||||||||| |||||| ||||| |||||||||| | ||||||||||||    || || ||||||||||||| ||||||| ||||||||    
T  2898724 tggtgctaggaaaccgaaagtatcaaaagcaaatggtataaaaac-tattgattgtcagaacacgctcactttctcatgtttggccactttgcttgatgc 2898822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 24177590 - 24177540
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtc 104  Q
    ||||||||||||| |||||||||||||| ||||||||| ||||||||||||    
T  24177590 taggaaaccgaaactgtcaaaaacaaatggtataaaaatatgttgattgtc 24177540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 37932302 - 37932177
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| |||||| |||||||||| |||||  |||| | |||||||| ||||||||||||| |||  |||||| | |||||||| ||| |||||  ||| |    
T  37932302 tggtgctaggaagccgaaagtgtaaaaaaataataatgtaaaaacacgttgattgtcagaacac-ctttctcgtatttgaccattttgcttgacacaact 37932204  T
Q  148 tttagtgctgtctgtcctaccgtaaaa 174  Q
    ||||| |||||||||| ||| ||||||    
T  37932203 tttagggctgtctgtcttactgtaaaa 37932177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 2764507 - 2764587
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccacttt 134  Q
    |||||| | |||||||||||||  |||| | |||||| ||||||||||||| || |||  |||||||||||||||||||||    
T  2764507 taggaagctgaaagtgtcaaaagaaaatggcataaaagcatgttgattgtcggaacacgttttctcatgtttgaccacttt 2764587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 37200012 - 37200096
Alignment:
Q  55 aggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    ||||| || ||||||| |||||||||| |||||||||||| |||||||| ||  ||   ||||| |||||||||||||||||||||    
T  37200012 aggaagccaaaagtgt-aaaaacaaatggtataaaaacatattgattgttagcacatgctttcttatgtttgaccactttacttga 37200096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 42919898 - 42920016
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtc 163  Q
    |||||||||||| || ||   ||||||||||||||||||| ||| |||  ||||||||||||| || ||||  ||||||||| |||||| | ||| ||||    
T  42919898 aaagtgtcaaaagcagatgacataaaaacatgttgattgtgagaacacg-tttctcatgtttggccgctttgtttgatgcaacttttagggttgtttgtc 42919996  T
Q  164 ctaccgtaaaaaccccgacc 183  Q
    ||| | ||||| | ||||||    
T  42919997 ctatcataaaagctccgacc 42920016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 23993478 - 23993531
Alignment:
Q  68 tgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcat 121  Q
    ||||||||| |||| |||||||||||||||||||||| ||  ||| ||||||||    
T  23993478 tgtcaaaaataaatcgtataaaaacatgttgattgtcggaatacactttctcat 23993531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 50314689 - 50314613
Alignment:
Q  68 tgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgca 144  Q
    ||||||||  |||| |||||||| |||||||||||| ||| ||   ||| ||||||||||||||||| ||| |||||    
T  50314689 tgtcaaaagtaaatggtataaaagcatgttgattgtgagaacaagttttgtcatgtttgaccactttgctttatgca 50314613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 7e-26; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 58 - 226
Target Start/End: Complemental strand, 19161858 - 19161690
Alignment:
Q  58 aaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctg 157  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||| |||  ||| ||||||||| ||||||| ||||| |||  |||||| | ||    
T  19161858 aaaccgaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacacgctttttcatgtttgcccacttttcttgacgcagattttagggatg 19161759  T
Q  158 tctgtcctaccgtaaaaaccccgacctttaatctcataagtggaaaaacccctttcaaatccacacatg 226  Q
    | ||||||||| |||||  || ||| | |||||||| ||||||  ||||||  ||||| || |||||||    
T  19161758 tatgtcctaccataaaaggcctgacatctaatctcacaagtggtgaaaccctattcaagtctacacatg 19161690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 5532457 - 5532576
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtc 163  Q
    ||||||||||||  ||||||||||||| |||||||||||||| | |||  ||||||||||||||||||||| ||||| |||  |||||| ||||  ||||    
T  5532457 aaagtgtcaaaagtaaatagtataaaagcatgttgattgtcacaacacgttttctcatgtttgaccactttgcttgacgcagcttttagggctgcatgtc 5532556  T
Q  164 ctaccgtaaaaaccccgacc 183  Q
    ||||||||||| ||||||||    
T  5532557 ctaccgtaaaatccccgacc 5532576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 4413151 - 4413025
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| |||||||||||||||||||||| ||||| |||||||| |||||||||||||||| |||  ||||||||||||| ||||||| |||||  ||  |    
T  4413151 tggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacacagct 4413052  T
Q  148 tttagtgctgtctgtcctaccgtaaaa 174  Q
    ||||| | || ||||||||| ||||||    
T  4413051 tttagggttgcctgtcctacggtaaaa 4413025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 48 - 167
Target Start/End: Complemental strand, 41867993 - 41867874
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| |||||| ||||||||||||||| ||||| |||||||| |||||||||||||||| ||   ||||||||||||||||||||| ||||| |||  |    
T  41867993 tggtgctaggaacccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacatgctttctcatgtttgaccactttgcttgacgcagct 41867894  T
Q  148 tttagtgctgtctgtcctac 167  Q
    ||||  |||| |||||||||    
T  41867893 tttaaggctgcctgtcctac 41867874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 2888544 - 2888642
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttag 152  Q
    |||||| || ||||||||| |||| ||| ||||||||||||||||||||||||| |||  ||||||||||||| ||||||| || || |||| ||||||    
T  2888544 taggaagccaaaagtgtcataaacgaatggtataaaaacatgttgattgtcagaacacgttttctcatgtttgtccactttgctagacgcaacttttag 2888642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 28225028 - 28225148
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagt 153  Q
    |||||| ||||||||||||||| ||||| |||||||| ||||||||||||||||  ||  |||||||| ||||  |||||| ||||| |||  |||||      
T  28225028 taggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaatacgctttctcatatttggtcactttgcttgacgcagcttttaaa 28225127  T
Q  154 gctgtctgtcctaccgtaaaa 174  Q
    | ||| |||||||||||||||    
T  28225128 gttgtttgtcctaccgtaaaa 28225148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 64 - 174
Target Start/End: Complemental strand, 9685484 - 9685374
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtc 163  Q
    |||||||||||| ||||| |||||||| |||||||||||||||| |||  ||| ||||||||| ||||||| ||||| ||   |||||| |||| || ||    
T  9685484 aaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttttcatgtttggccactttgcttgacgcggattttagggctgcctatc 9685385  T
Q  164 ctaccgtaaaa 174  Q
    |||| ||||||    
T  9685384 ctacggtaaaa 9685374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 34814893 - 34814812
Alignment:
Q  59 aaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    ||||||||||||| ||| ||||| |||||||| ||| |||||||||||| |||  |||||||||||||| ||||||| ||||    
T  34814893 aaccgaaagtgtcgaaagcaaatggtataaaagcatattgattgtcagaacacgctttctcatgtttgatcactttatttga 34814812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 17344660 - 17344752
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    ||||| |||||||| ||||||||||||| ||||| |||||||| |||||||||||| | | |||  |||||| |||||| |||| ||||||||    
T  17344660 tggtgctaggaaactgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtgaaaacacgttttctcgtgtttggccaccttacttga 17344752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 2886692 - 2886579
Alignment:
Q  56 ggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgc 155  Q
    ||||||||||| | ||||||||||||  |||||||||||||||||||||||| |||| ||     |||||  | |||||||||||||||| | |||| ||    
T  2886692 ggaaaccgaaaatatcaaaaacaaatgatataaaaacatgttgattgtcagaacacactt-----tgtttcgctactttacttgatgcaactattagagc 2886598  T
Q  156 tgtctgtcctaccgtaaaa 174  Q
    ||  || ||||||||||||    
T  2886597 tgcgtgacctaccgtaaaa 2886579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 23485022 - 23484937
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccacttt 134  Q
    ||||| |||||||| ||| ||||||||||||||| |||||||| |||||||||||||||| ||   |||||||| |||| |||||||    
T  23485022 tggtgctaggaaacagaa-gtgtcaaaaacaaatggtataaaagcatgttgattgtcagaacatgctttctcatatttggccacttt 23484937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 27502398 - 27502476
Alignment:
Q  62 cgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    |||||||||||||||  ||| |||||||| ||||||| ||||| || |||  ||||||||||||||||||||| |||||    
T  27502398 cgaaagtgtcaaaaagcaattgtataaaagcatgttgtttgtcggaacacgttttctcatgtttgaccactttgcttga 27502476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 13147185 - 13147090
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaac---atgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    ||||| ||| ||||| |||||||||||| ||||| |||||||||    ||| ||||||||||| |||  ||||||||||||||||||||| |||||    
T  13147185 tggtgttagaaaaccaaaagtgtcaaaatcaaatggtataaaaagtatatgctgattgtcagaacacgctttctcatgtttgaccacttttcttga 13147090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 16351906 - 16351834
Alignment:
Q  68 tgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    |||||||| |||| | |||||||  ||||||||||| ||| |||| ||||||||||||||||||||| |||||    
T  16351906 tgtcaaaagcaaacaatataaaattatgttgattgtgagaacacattttctcatgtttgaccactttgcttga 16351834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 33612631 - 33612555
Alignment:
Q  49 ggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgttt 125  Q
    |||| |||||| || ||||||||||| |||||| |||||||| |||||||||||||| | |||  ||||||||||||    
T  33612631 ggtgttaggaagccaaaagtgtcaaatacaaattgtataaaatcatgttgattgtcaaaacacgttttctcatgttt 33612555  T

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Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 54 - 226
Target Start/End: Original strand, 44686444 - 44686619
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatg----ttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttt 149  Q
    |||||| ||||||||||||||| | || | ||||||| ||||    |||||||||||| |||  ||||||||||||| |||| || |||||  ||  |||    
T  44686444 taggaagccgaaagtgtcaaaagcgaacaatataaaagcatgttgattgattgtcagaacacgctttctcatgtttggccacattgcttga-ccagcttt 44686542  T
Q  150 tagtgctgtctgtcctaccgtaaaaaccccgacctttaatctcataagtggaaaaacccctttcaaatccacacatg 226  Q
    |||  |||||||||||| ||||||| ||||||||  ||| | || ||||||  |||||||  |||| ||||||||||    
T  44686543 taggactgtctgtcctatcgtaaaagccccgacccctaaacccacaagtggtgaaaccccagtcaagtccacacatg 44686619  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 18745039 - 18744947
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttga 140  Q
    ||||| ||| ||| ||||| |||||||| ||||| ||||||||  ||||||||||||||| |||  |||||| |||||| |||| | ||||||    
T  18745039 tggtgctagaaaatcgaaaatgtcaaaagcaaatggtataaaagtatgttgattgtcagaacacgctttctcgtgtttggccacctaacttga 18744947  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 174
Target Start/End: Complemental strand, 32029156 - 32029046
Alignment:
Q  63 gaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgt 162  Q
    |||||||||||||||||||  ||| ||| ||||||||||||| || ||||  ||||||| ||| |||| ||| ||| || |||||||||| | ||  |||    
T  32029156 gaaagtgtcaaaaacaaatgatatgaaagcatgttgattgtctgaacacacattctcatatttaaccaatttgcttaat-caatttttagggttgcatgt 32029058  T
Q  163 cctaccgtaaaa 174  Q
    |||| |||||||    
T  32029057 cctatcgtaaaa 32029046  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 3825785 - 3825875
Alignment:
Q  85 ataaaaacatgttgattgtcagagcacaa-tttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtcctaccgtaaaa 174  Q
    |||||||||||| |||||||||   | || ||| ||||||||||||||||| ||||| |||  |||||| ||| |||||| ||||||||||    
T  3825785 ataaaaacatgtagattgtcaggaaaaaactttttcatgtttgaccactttgcttgacgcagcttttagggctctctgtcataccgtaaaa 3825875  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 20142813 - 20142753
Alignment:
Q  45 ctttggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtca 105  Q
    ||||| || ||| ||||| ||||||||||||  |||| |||||||| ||||||||||||||    
T  20142813 ctttgatgctagaaaaccaaaagtgtcaaaagaaaatggtataaaagcatgttgattgtca 20142753  T

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Target: scaffold0148 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 48 - 209
Target Start/End: Original strand, 33272 - 33432
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| ||||||||||||| ||||||||  |||| ||||||||||||||||||||||||| |||  ||||||||||||  ||||||| |||||||| | |    
T  33272 tggtgttaggaaaccgaaaatgtcaaaagtaaatggtataaaaacatgttgattgtcagaacacgctttctcatgtttagccactttgcttgatgccact 33371  T
Q  148 tttagtgctgtctgtcctaccgtaaaaaccccgacctttaatctcataagtggaaaaacccc 209  Q
    || || | || ||||||||||||||||  ||||||   ||||| |||||||||  |||||||    
T  33372 ttaag-gttgcctgtcctaccgtaaaaggcccgacacctaatcccataagtggtgaaacccc 33432  T

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Target: scaffold1768 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 45 - 209
Target Start/End: Complemental strand, 272 - 108
Alignment:
Q  45 ctttggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgca 144  Q
    |||||||  ||| ||||| ||||||||||| |||||| |||||||| ||||||||| |||| | | || | ||||||||||| ||||||| ||||| |||    
T  272 ctttggtactagaaaaccaaaagtgtcaaacacaaatggtataaaagcatgttgatggtcataacccactgtctcatgtttggccactttgcttgacgca 173  T
Q  145 atttttagtgctgtctgtcctaccgtaaaaaccccgacctttaatctcataagtggaaaaacccc 209  Q
     ||||||| |||| ||||||||| ||||||  ||||||  |||||| || ||||||  |||||||    
T  172 gtttttagggctgcctgtcctacagtaaaaggcccgacacttaatcccacaagtggtgaaacccc 108  T

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Target: scaffold0009 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 103128 - 103253
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatt 147  Q
    ||||| |||||||||||||||||||||| ||||| |||||||| |||||||||||||||| |||  |||||| |||||| |||  |||||||| |||  |    
T  103128 tggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcaga-cacgctttctcgtgtttggccatcttacttgacgcagct 103226  T
Q  148 tttagtgctgtctgtcctaccgtaaaa 174  Q
    || || |||| ||||||||| ||||||    
T  103227 ttgagggctgcctgtcctacggtaaaa 103253  T

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Target: scaffold0110 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 47618 - 47498
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagt 153  Q
    ||||||| ||||||||| |||| ||||| ||||||||| ||||| | ||||||| |||| ||||||||||||| ||| ||||||||| |||| ||||||     
T  47618 taggaaatcgaaagtgttaaaagcaaatggtataaaaatatgttaactgtcagaacacattttctcatgtttggccattttacttgacgcaacttttagg 47519  T
Q  154 gctgtctgtcctaccgtaaaa 174  Q
      | | |||||||||||||||    
T  47518 tttatttgtcctaccgtaaaa 47498  T

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Target: scaffold0031 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 45 - 157
Target Start/End: Original strand, 49430 - 49542
Alignment:
Q  45 ctttggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgca 144  Q
    |||||||| || |||  |||||||||||||| ||||| |||||||| || ||||||||||||| ||| ||||||||  ||||||||||||  ||||||||    
T  49430 ctttggtgttaagaagtcgaaagtgtcaaaagcaaatggtataaaagcacgttgattgtcagaacacgatttctcacatttgaccactttgtttgatgca 49529  T
Q  145 atttttagtgctg 157  Q
    | |||||| ||||    
T  49530 acttttagggctg 49542  T

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Target: scaffold0470 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 7630 - 7727
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaattttta 151  Q
    |||||||| ||||||||||||| ||||| || ||||| |||||||||||| ||| |||  |||||||||||| || ||| || |||| |||| |||||    
T  7630 taggaaactgaaagtgtcaaaagcaaatggtttaaaatcatgttgattgtgagaacacgctttctcatgtttaactactctatttgacgcaactttta 7727  T

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Target: scaffold0493 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 8595 - 8525
Alignment:
Q  54 taggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtt 124  Q
    ||||||||| ||||||| |||  ||||| ||||||||||||||||||||||||| ||   |||||||||||    
T  8595 taggaaaccaaaagtgttaaacgcaaatggtataaaaacatgttgattgtcagaacatgttttctcatgtt 8525  T

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Target: scaffold0224 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 183
Target Start/End: Complemental strand, 18433 - 18315
Alignment:
Q  64 aaagtgtcaaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtc 163  Q
    |||||||||||| || ||   ||||||||||||||||||| ||| |||  ||||||||||||| || ||||  ||||||||| |||||| | ||| ||||    
T  18433 aaagtgtcaaaagcagatgacataaaaacatgttgattgtgagaacacg-tttctcatgtttggccgctttgtttgatgcaacttttagggttgtttgtc 18335  T
Q  164 ctaccgtaaaaaccccgacc 183  Q
    ||| | ||||| | ||||||    
T  18334 ctatcataaaagctccgacc 18315  T

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Target: scaffold0119 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 167
Target Start/End: Original strand, 16180 - 16275
Alignment:
Q  72 aaaaacaaatagtataaaaacatgttgattgtcagagcacaatttctcatgtttgaccactttacttgatgcaatttttagtgctgtctgtcctac 167  Q
    ||||| ||| |||||||||||||||| ||||||||| ||   ||||||||||||| ||| |||  |||| |||  |||||| | ||||||||||||    
T  16180 aaaaaaaaaaagtataaaaacatgtttattgtcagaacatgttttctcatgtttggccattttgtttgacgcagcttttagcgttgtctgtcctac 16275  T

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Target: scaffold0186 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 179
Target Start/End: Original strand, 10382 - 10517
Alignment:
Q  48 tggtgataggaaaccgaaagtgtcaaaaacaaatagtataaaaacatgttga----ttgtcagagcacaatttctcatgtttgaccactttacttgatgc 143  Q
    ||||| |||||| ||  ||||||||||| ||||| |||||||| ||||||||    |||||||| |||   || ||||||||| ||| ||||||||| ||    
T  10382 tggtgctaggaagccacaagtgtcaaaagcaaatggtataaaagcatgttgattgattgtcagaacacgcattatcatgtttggccattttacttgacgc 10481  T
Q  144 aatttttagtgctgtctgtcctaccgtaaaaacccc 179  Q
    || |||||| ||||  ||||| || |||||| ||||    
T  10482 aacttttagggctgcttgtccaactgtaaaagcccc 10517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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