View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4740-Insertion-6 (Length: 637)
Name: NF4740-Insertion-6
Description: NF4740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4740-Insertion-6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 8 - 637
Target Start/End: Complemental strand, 41150757 - 41150123
Alignment:
| Q |
8 |
gcatttttgtattttatcgaagtcatcgtgctactatgattttgttagaatcaccgtgattccaaacatgtattagacataacgaacaaaggtaaaattc |
107 |
Q |
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| T |
41150757 |
gcatttttgtattttaacgaagtcatcgtgctactatgattttattagaatcatcgtgattccaaacatgtattagacataacgaacaaaggtaaaattc |
41150658 |
T |
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| Q |
108 |
taactaacctttccttggtgtaacgcatttagggcatgctcaatggaagagtaccctttagagggacaatctggatcaccttcagcttcactcacaaaga |
207 |
Q |
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| T |
41150657 |
taactaacctttccttggtgtaacgcatttagggcatgctcaatggaagagtatcctttagagggacaatctggatcaccttcagcttcactcacgaaga |
41150558 |
T |
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| Q |
208 |
aatcatcggtttcttgctttatttctttttcggcgtttaacgtttttaagagggatccattttcattttccttcaaatcaccactatcatcaaacacgtc |
307 |
Q |
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| T |
41150557 |
aatcatcggtttcttgctttatttctttttcggcgtttaacgtttttaagagggatccattttcattttccttcaaatcaccactatcatcaaacacgtc |
41150458 |
T |
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| Q |
308 |
ttcagttccaaccttagaaaacccaatagcataaaaagccaaatttctcaccttgttgttccacaggccaaatcttgcactatgatgagtagtgcatgac |
407 |
Q |
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| T |
41150457 |
ttcagttccaaccttagaaaacccaatagcataaaaagccaaatttctcaccttgttgttccacaggccaaatcttgcactatgatgagtagtgcatgac |
41150358 |
T |
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| Q |
408 |
cgatgcaagctttgaataaatagaaaaatttaacacgagttcaacaaatagaagaacaattaagagtgttgtgttatctagagaaataaaaatatgtacc |
507 |
Q |
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| T |
41150357 |
cgatgcaagctttgaataaatagaaaaatttaacacgagttcaacaaatagaagaacaattaagagtgttgtgttatctagagaaataaaaatatgtacc |
41150258 |
T |
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| Q |
508 |
ttgaattggtgatgacgtgggaaatcaaaggactggggaatgaagcagagtccataggcagtgatatcaaattttctattcttagaaaattgaaggaaag |
607 |
Q |
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| T |
41150257 |
ttgaattggtgatgacgtgggaaatcaaaggaccggggaatgaagcagagtccataggcagtgatatcaaa-tttctattcttagaaaattgaaggaaag |
41150159 |
T |
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| Q |
608 |
a------atgtactcaaaaattgtgttcttaattat |
637 |
Q |
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| T |
41150158 |
aaaaagtatgtactcaaaaattgtgttcttaattat |
41150123 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 46090067 - 46090025
Alignment:
| Q |
35 |
gtgctactatgattttgttagaatcaccgtgattccaaacatg |
77 |
Q |
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| T |
46090067 |
gtgctactatgattttgttaaatttaccgtgattccaaacatg |
46090025 |
T |
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