View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4740-Insertion-8 (Length: 201)
Name: NF4740-Insertion-8
Description: NF4740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4740-Insertion-8 |
 | |
|
| [»] chr8 (6 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 2945545 - 2945738
Alignment:
| Q |
8 |
gtagcataattcaaaaaatcaccgggaacttcctcaatcttctggatgataaacttacagctttgactttcccaacgtacccttttgtttgctttctttg |
107 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2945545 |
gtagcataattcaaagaatcaccgggaacttcctcaatcttctggatgataaacttacagctttgactttcccaacgtacccttttgtttgctttctttg |
2945644 |
T |
|
| Q |
108 |
taatgatttcccccgatgataatgataaactatagcttacattgatcggctctgttgtctcatggaaactcgagttgacaagactttgaacagc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2945645 |
taatgatttcccccgatgataatgataaactatagcttacattgatcggttctgttgtctcatggaaactcgagttgacaagactttgaacagc |
2945738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 25 - 201
Target Start/End: Original strand, 2928921 - 2929097
Alignment:
| Q |
25 |
atcaccgggaacttcctcaatcttctggatgataaacttacagctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgat |
124 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2928921 |
atcaccaggaacttcctccatcttctggatgataaacttgcagctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccctgat |
2929020 |
T |
|
| Q |
125 |
gataatgataaactatagcttacattgatcggctctgttgtctcatggaaactcgagttgacaagactttgaacagc |
201 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2929021 |
gacaatgacaaactatagcttacattgatcggctctgttgtctcatggaaactcgagttgataagactttgaacagc |
2929097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 3013878 - 3013685
Alignment:
| Q |
8 |
gtagcataattcaaaaaatcaccgggaacttcctcaatcttctggatgataaacttacagctttgactttcccaacgtacccttttgtttgctttctttg |
107 |
Q |
| |
|
|||||||| ||||| ||||||| ||||| | || |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
3013878 |
gtagcatacttcaatgaatcaccaagaactccatccatcttctggatgataaacttgcaactttgactttcccaacgtacccttttgtttgatttcttgg |
3013779 |
T |
|
| Q |
108 |
taatgatttcccccgatgataatgataaactatagcttacattgatcggctctgttgtctcatggaaactcgagttgacaagactttgaacagc |
201 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
3013778 |
taatgatgtcccctgatgataatgataaactatagcttacattgattggctctgttgtctcatggaaactcaagttgataagactttgaacagc |
3013685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 201
Target Start/End: Original strand, 37794311 - 37794466
Alignment:
| Q |
46 |
cttctggatgataaacttacagctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgatgataatgataaactatagctt |
145 |
Q |
| |
|
||||||||||| |||||| | ||||| |||||||| |||||| |||||| |||||||||||||||| ||||| ||||| | ||||| | |||||||| |
|
|
| T |
37794311 |
cttctggatgaaaaacttggaactttgcctttcccagcgtaccattttgtcatctttctttgtaatgatgtcccctgatgacagtgatagattatagctt |
37794410 |
T |
|
| Q |
146 |
acattgatcggctctgttgtctcatggaaactcgagttgacaagactttgaacagc |
201 |
Q |
| |
|
|| ||| ||| | |||||||| |||||||| ||||| ||||| ||||||||| |
|
|
| T |
37794411 |
accgtgaccgggacctttgtctcaaggaaactcaggttgagaagaccttgaacagc |
37794466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 2919438 - 2919541
Alignment:
| Q |
44 |
atcttctggatgataaacttacagctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgatgataatgataaactatagc |
143 |
Q |
| |
|
||||||||||||| |||||| | |||| ||||||| |||||| |||||| | |||||||||||||||| ||||| ||||| | || |||||||| | |
|
|
| T |
2919438 |
atcttctggatgaagaacttagaacttttcttttcccagcgtaccattttgtcttctttctttgtaatgatgtcccctgatgacagcgacaaactataac |
2919537 |
T |
|
| Q |
144 |
ttac |
147 |
Q |
| |
|
|||| |
|
|
| T |
2919538 |
ttac |
2919541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 2941950 - 2941982
Alignment:
| Q |
68 |
ctttgactttcccaacgtacccttttgtttgct |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
2941950 |
ctttgactttccaaacgtacccttttgtttgct |
2941982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 44 - 201
Target Start/End: Complemental strand, 4917523 - 4917366
Alignment:
| Q |
44 |
atcttctggatgataaacttacagctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgatgataatgataaactatagc |
143 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
4917523 |
atcttttggattataaacttgcagctttgactctcccaacgcacccttttgttggctttcttggtaatgattttccctgatgataatgataaactatagc |
4917424 |
T |
|
| Q |
144 |
ttacattgatcggctctgttgtctcatggaaactcgagttgacaagactttgaacagc |
201 |
Q |
| |
|
|||||||||| ||||| |||||||||| ||||| |||||| || | |||||||||| |
|
|
| T |
4917423 |
ttacattgattggctcctttgtctcatgaaaacttaagttgagaaaattttgaacagc |
4917366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 201
Target Start/End: Complemental strand, 1508175 - 1508018
Alignment:
| Q |
44 |
atcttctggatgataaacttacagctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgatgataatgataaactatagc |
143 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| || || ||||||| || | |||||||| |
|
|
| T |
1508175 |
atcttctggatgataaacttggaactttgactttcccaacgcacccttttgtttgctttctttgtaatgatgtctccggatgatagtggcagactatagc |
1508076 |
T |
|
| Q |
144 |
ttacattgatcggctctgttgtctcatggaaactcgagttgacaagactttgaacagc |
201 |
Q |
| |
|
|||||||||| || || ||||||||||||| || |||||| |||| |||||||||| |
|
|
| T |
1508075 |
ttacattgattggttccattgtctcatggaagcttaagttgagaagagtttgaacagc |
1508018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University