View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4740-Insertion-9 (Length: 595)
Name: NF4740-Insertion-9
Description: NF4740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4740-Insertion-9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 33 - 595
Target Start/End: Original strand, 1572838 - 1573390
Alignment:
| Q |
33 |
aagatgatggtaggaacaggttaaaagcaatttaaagaatcaccttaggctgatattttaggctttattttgtctccaagagaagagttcaatgctataa |
132 |
Q |
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| T |
1572838 |
aagatgatggtaggaacaggttaaaagcaatttaaagaatcaccttaggctgatatttt------------gtctccaagagaagagttgaatgctataa |
1572925 |
T |
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| Q |
133 |
ttgtctatgtcaataattaaattgtccatttaaaatatacattgacnnnnnnntaaaatcatgactattaacatatcatgtttgattcagtaattcaatg |
232 |
Q |
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| T |
1572926 |
ttgtctatgtcaataattaaattgtccatttaaaatatacattgacaaaaaaataaaatcatgactattaacatatcatgtttgattcagtaattcaatg |
1573025 |
T |
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| Q |
233 |
agtaaaatgttagtaattcacttttaaaacactatttacaagtgattgaaattcatataggtctcatcattttataaattaattctgcactgtttaatat |
332 |
Q |
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| T |
1573026 |
agtaaaatgttagtaattcacttttaaaacactatttacaagtgactgaaattcatataagtctcatcattttataaattaattctgcactatttaatat |
1573125 |
T |
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| Q |
333 |
gattcacataaatttcaactaatagtgtattattggccaagaggtttatgcatggtatgttataatataaagtgtgaattttctcactttacaacagttn |
432 |
Q |
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| T |
1573126 |
gattcacataaatttcaactaatagtgtattattggccaagaggtttatgtatggtatgttataatataaagtgtgaattttctcactttacaacagtt- |
1573224 |
T |
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| Q |
433 |
nnnnnnnnnttacttaaatcatg---tacaaaatagagattaaatacataaaacagaatatggaactaaatgagtctatttccaaaaagacattattatg |
529 |
Q |
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| T |
1573225 |
aaaaaaaaattacttaaatcatgtactacaaaatagagattaaatatataaaacagaatatggaactaaatgagtctatttccaaaaagacattattatg |
1573324 |
T |
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| Q |
530 |
ttttgttattctgtccaagtcataaatggttaacattaaatgacaatctccctgtttcatcttctg |
595 |
Q |
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| T |
1573325 |
ttttgttattctgtccaagtcataaatggttaacattaaatgacaatctccctgtttcatcttctg |
1573390 |
T |
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