View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4740_high_6 (Length: 237)

Name: NF4740_high_6
Description: NF4740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4740_high_6
NF4740_high_6
[»] chr3 (2 HSPs)
chr3 (16-237)||(26655001-26655220)
chr3 (16-88)||(17384101-17384172)
[»] chr5 (2 HSPs)
chr5 (30-94)||(28319717-28319781)
chr5 (16-82)||(33487046-33487111)
[»] chr1 (1 HSPs)
chr1 (17-88)||(41967199-41967270)
[»] chr4 (2 HSPs)
chr4 (16-86)||(12765281-12765351)
chr4 (17-87)||(30969645-30969714)
[»] chr6 (1 HSPs)
chr6 (21-87)||(15914330-15914396)
[»] chr7 (2 HSPs)
chr7 (20-88)||(19156536-19156604)
chr7 (20-88)||(20755935-20756003)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 26655220 - 26655001
Alignment:
Q  16 gaaacaaacataagaatatatctttcctgctatcatattctcaggaatttttaaatatgacttgaaacaaacgttccctaagtgatggacatgacatcaa 115  Q
    ||||||||||||||||||||||||||||||||||||  ||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26655220 gaaacaaacataagaatatatctttcctgctatcat--tctcaagaatttccaaatatgacttgaaacaaacgttccctaagtgatggacatgacatcaa 26655123  T
Q  116 tcataggatataatatatgaaaaatgttaacttctacattaagaatgtctacaatggagcccttcttctaaagtgcatcatgctaaatagatacccttat 215  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26655122 tcataggatataatatatgaaaaatgttaacttctgcattaagaatgtctacaatggagcccttcttctaaagtgcatcatgctaaatagatacccttat 26655023  T
Q  216 aatatcaataatttaggttcct 237  Q
    ||||||||||||||||||||||    
T  26655022 aatatcaataatttaggttcct 26655001  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 17384172 - 17384101
Alignment:
Q  16 gaaacaaacataagaatatatctttcctgctatcatattctcaggaatttttaaatatgacttgaaacaaacg 88  Q
    |||||||||||| |||||||| ||| || ||||||||||| ||||||| |  | |||||||||||||||||||    
T  17384172 gaaacaaacatatgaatatatattttctactatcatattc-caggaatctccagatatgacttgaaacaaacg 17384101  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 28319781 - 28319717
Alignment:
Q  30 aatatatctttcctgctatcatattctcaggaatttttaaatatgacttgaaacaaacgttccct 94  Q
    ||||||||||||| ||||||||||||||  |||| || ||||||| |||||||||||||||||||    
T  28319781 aatatatctttccagctatcatattctcctgaatcttcaaatatggcttgaaacaaacgttccct 28319717  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 33487111 - 33487046
Alignment:
Q  16 gaaacaaacataagaatatatctttcctgctatcatattctcaggaatttttaaatatgacttgaaa 82  Q
    |||| |||||||| |||||||||||||| | ||||||||| |||||||||| |||||||||||||||    
T  33487111 gaaataaacataaaaatatatctttcctcc-atcatattcccaggaattttcaaatatgacttgaaa 33487046  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 41967270 - 41967199
Alignment:
Q  17 aaacaaacataagaatatatctttcctgctatcatattctcaggaatttttaaatatgacttgaaacaaacg 88  Q
    |||||||||||  ||||||||||| |||||||||||||  ||||||| ||||||||| |||| |||||||||    
T  41967270 aaacaaacatagaaatatatcttttctgctatcatatttccaggaatctttaaatataacttaaaacaaacg 41967199  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 12765281 - 12765351
Alignment:
Q  16 gaaacaaacataagaatatatctttcctgctatcatattctcaggaatttttaaatatgacttgaaacaaa 86  Q
    |||||||||||  |||||||||| || ||||| |||||||||| ||||||  |||||||||||||||||||    
T  12765281 gaaacaaacattggaatatatctatcttgctaccatattctcatgaatttccaaatatgacttgaaacaaa 12765351  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 30969714 - 30969645
Alignment:
Q  17 aaacaaacataagaatatatctttcctgctatcatattctcaggaatttttaaatatgacttgaaacaaac 87  Q
    ||||||||||| |||||| |||||||  ||||||||||||||||||| |  |||||| |||||||||||||    
T  30969714 aaacaaacataggaatatttctttcca-ctatcatattctcaggaatctccaaatataacttgaaacaaac 30969645  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 15914330 - 15914396
Alignment:
Q  21 aaacataagaatatatctttcctgctatcatattctcaggaatttttaaatatgacttgaaacaaac 87  Q
    |||||||  |||||||||||||||||| ||||||| ||  ||| | |||||||||||||||||||||    
T  15914330 aaacatagaaatatatctttcctgctaccatattcccataaatctctaaatatgacttgaaacaaac 15914396  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 19156536 - 19156604
Alignment:
Q  20 caaacataagaatatatctttcctgctatcatattctcaggaatttttaaatatgacttgaaacaaacg 88  Q
    ||||||||  ||||||||||||||| |||| ||||   |||||| |  |||||||||||||||||||||    
T  19156536 caaacatagaaatatatctttcctgatatcctatttctaggaatctccaaatatgacttgaaacaaacg 19156604  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 20755935 - 20756003
Alignment:
Q  20 caaacataagaatatatctttcctgctatcatattctcaggaatttttaaatatgacttgaaacaaacg 88  Q
    ||||||||  ||||||||||||||| |||| ||||   |||||| |  |||||||||||||||||||||    
T  20755935 caaacatagaaatatatctttcctgatatcctatttctaggaatctccaaatatgacttgaaacaaacg 20756003  T

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