View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4740_high_7 (Length: 228)
Name: NF4740_high_7
Description: NF4740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4740_high_7 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 24892882 - 24893103
Alignment:
| Q |
7 |
tgttggccattggagcttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaat |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24892882 |
tgttgaccattggagcttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaat |
24892981 |
T |
|
| Q |
107 |
tgctaaaccaaaacgaggaggaaccggagcccggcctccaagaataaccatttttgagaatgtcttttgcacgaatgattgctgcccatgaaggtgaatt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
24892982 |
tgctaaaccaaaacgaggaggaaccggagcccggcctccaagaataaccttgtttgagaatgtcttttgcacgaatgatagctgtccatgaaggtgaatt |
24893081 |
T |
|
| Q |
207 |
gctgccggaagctttcgcttga |
228 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
24893082 |
gttgccggaagctttcgcttga |
24893103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 24989716 - 24989929
Alignment:
| Q |
15 |
attggagcttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaac |
114 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| ||||||||||||||| || | | | || |||||||| |||||| | ||||||||||| ||| |
|
|
| T |
24989716 |
attggagcttatgacatccttaaccgttaggtgaatgacatgaatatcaataaccggaatcaaagacccaaggagtccatggtggcaccaattgctgaac |
24989815 |
T |
|
| Q |
115 |
caaaacgaggaggaaccggagcccggcctccaagaataaccatttttgagaatgtcttttgcacgaatgattgctgcccatgaaggtgaattgctgccgg |
214 |
Q |
| |
|
||||| ||||| ||||| ||||| |||| ||||| |||||||||||||||||| || || ||||||||||| |||||||| ||||||||| || | |||| |
|
|
| T |
24989816 |
caaaaggaggatgaacccgagcctggccgccaagcataaccatttttgagaatatccttagcacgaatgatagctgcccaagaaggtgaactgttaccgg |
24989915 |
T |
|
| Q |
215 |
aagctttcgcttga |
228 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
24989916 |
aagctttcgcttga |
24989929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 194
Target Start/End: Original strand, 32724603 - 32724697
Alignment:
| Q |
100 |
caccaattgctaaaccaaaacgaggaggaaccggagcccggcctccaagaataaccatttttgagaatgtcttttgcacgaatgattgctgccca |
194 |
Q |
| |
|
||||||||||| ||| |||| ||||| ||||| ||||| | | ||||||||| |||||||||||||||||||| ||||||||||| | |||||| |
|
|
| T |
32724603 |
caccaattgctgaacaaaaaggaggatgaacccgagccggcgcgccaagaatacccatttttgagaatgtctttggcacgaatgatagatgccca |
32724697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 23425605 - 23425384
Alignment:
| Q |
7 |
tgttggccattggagcttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23425605 |
tgttggccattggagcttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaagaaccaaggagaccatggggacaccaat |
23425506 |
T |
|
| Q |
107 |
tgctaaaccaaaacgaggaggaaccggagcccggcctccaagaataaccatttttgagaatgtcttttgcacgaatgattgctgcccatgaaggtgaatt |
206 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23425505 |
tgcttaaccaaaacgaggaggaaccggagcccggcctccaagaatagccatttttgaaaatgtcttttgcacgaatgatagctgcccatgaaggtgaatt |
23425406 |
T |
|
| Q |
207 |
gctgccggaagctttcgcttga |
228 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
23425405 |
gttgccggaagctttcgcttga |
23425384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 23206912 - 23207133
Alignment:
| Q |
7 |
tgttggccattggagcttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaat |
106 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
23206912 |
tgttggccatttgagcttatcacatcttttaccgtaaggtgaatgtcatgaatatcaataatggggaccaaagaaccaaggagaccatggggatgccaat |
23207011 |
T |
|
| Q |
107 |
tgctaaaccaaaacgaggaggaaccggagcccggcctccaagaataaccatttttgagaatgtcttttgcacgaatgattgctgcccatgaaggtgaatt |
206 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||| | |
|
|
| T |
23207012 |
tgctgaaccaaaaagaggaggaaccggagcccggcctccaagaataaccatttttgaaaatgtcttttgcacgaatgatagctgcccaggaaggtgaact |
23207111 |
T |
|
| Q |
207 |
gctgccggaagctttcgcttga |
228 |
Q |
| |
|
| |||||||| | ||||||||| |
|
|
| T |
23207112 |
gttgccggaaaccttcgcttga |
23207133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 43 - 194
Target Start/End: Complemental strand, 43299404 - 43299253
Alignment:
| Q |
43 |
aggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaaccaaaacgaggaggaaccggagcccggcc |
142 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||| | |||||||| | ||| || || ||||||||||| |||||||| ||||||||||| ||||| | | |
|
|
| T |
43299404 |
aggtgaatgtcatggatatcaataataggaaccaaagaaccaagaaaaccttgagggcaccaattgctgaaccaaaaggaggaggaacccgagccggcgc |
43299305 |
T |
|
| Q |
143 |
tccaagaataaccatttttgagaatgtcttttgcacgaatgattgctgccca |
194 |
Q |
| |
|
||||||||| |||||||||||||| ||||| ||||||||||| | |||||| |
|
|
| T |
43299304 |
gccaagaatacccatttttgagaatttctttggcacgaatgatagatgccca |
43299253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 10102732 - 10102941
Alignment:
| Q |
7 |
tgttggccattggagcttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaat |
106 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| ||||| || ||||| || ||||||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
10102732 |
tgttggccattgaagcttatcacatatctaaccgttaggtggatatcatggatgtcaataa------ccg--gaaccaaggaggccatggggacaccaat |
10102823 |
T |
|
| Q |
107 |
tgctaaaccaaaacgaggaggaaccggagcccggcctccaagaataaccatttttgagaatgtcttttgcacgaatgattgctgcccatgaaggtgaatt |
206 |
Q |
| |
|
|| | |||||||| ||||| |||| ||||| | | |||| ||||||||||||||| ||| ||||| ||||||||||| | |||||| || ||||| || |
|
|
| T |
10102824 |
tgttgaaccaaaaggaggattaacccgagcctgcgcgccaataataaccatttttgaaaatatctttggcacgaatgatagatgcccaagagggtgagtt |
10102923 |
T |
|
| Q |
207 |
gctgccggaagctttcgc |
224 |
Q |
| |
|
||| | ||||||||||| |
|
|
| T |
10102924 |
gcttcttgaagctttcgc |
10102941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 203
Target Start/End: Complemental strand, 50452986 - 50452806
Alignment:
| Q |
23 |
ttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaaccaaaacga |
122 |
Q |
| |
|
|||||||||| ||||||| || || | |||||||||||||||| ||||| | ||||||||| | |||||| |||||||||| ||||||||||| || |
|
|
| T |
50452986 |
ttatcacatctctaaccgtgagctggacatcatgaatatcaataacagggactaaagaaccaaggggcccatggtgacaccaattactaaaccaaaaaga |
50452887 |
T |
|
| Q |
123 |
ggaggaaccggagcccggcctccaagaataaccatttttgagaatgtcttttgcacgaatgattgctgcccatgaaggtga |
203 |
Q |
| |
|
||| ||||| || || ||||||||||| |||||| ||||| || ||||| ||||| ||||| | || ||| |||||||| |
|
|
| T |
50452886 |
ggaagaacccgaacctggcctccaagagtaaccaagtttgaagatatctttggcacggatgatagatgaccaagaaggtga |
50452806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 5192212 - 5192372
Alignment:
| Q |
23 |
ttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaaccaaaacga |
122 |
Q |
| |
|
|||||||||| || || || || ||||||||||| || |||||||| || ||| | || ||||| | ||| | | ||||||||||| |||||||| || |
|
|
| T |
5192212 |
ttatcacatctttgacggtgagatgaatgtcatggatgtcaataataggaaccaaagagccaagtaaacctcgagagcaccaattgctgaaccaaaagga |
5192311 |
T |
|
| Q |
123 |
ggaggaaccggagcccggcctccaagaataaccatttttgagaatgtcttttgcacgaatg |
183 |
Q |
| |
|
||||||| | || || | | ||||| ||| |||||||||||||||||||| ||||||||| |
|
|
| T |
5192312 |
ggaggaatccgatccggcgcgccaagcatacccatttttgagaatgtctttggcacgaatg |
5192372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 575485 - 575343
Alignment:
| Q |
43 |
aggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaaccaaaacgaggaggaaccggagcccggcc |
142 |
Q |
| |
|
|||||||| |||||||| || ||||| || ||| ||||||| || | ||||||| | ||||||||| | |||||||| ||||||||||| || || || | |
|
|
| T |
575485 |
aggtgaatatcatgaatgtctataataggaaccaaggaaccgagaaaaccatggtggcaccaattgttgaaccaaaaggaggaggaacctgaacctggtc |
575386 |
T |
|
| Q |
143 |
tccaagaataaccatttttgagaatgtcttttgcacgaatgat |
185 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
575385 |
gccaagaataaccatttttgagaatatctttagcacgtatgat |
575343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 203
Target Start/End: Complemental strand, 3882806 - 3882626
Alignment:
| Q |
23 |
ttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaaccaaaacga |
122 |
Q |
| |
|
|||||||||| ||||||| || || | |||||||||||||||| ||||| | || |||||| | |||||| |||||||||| ||||||||||| || |
|
|
| T |
3882806 |
ttatcacatctctaaccgtgagctggacatcatgaatatcaataacagggactaaagagccaagggggccatggtgacaccaattactaaaccaaaaaga |
3882707 |
T |
|
| Q |
123 |
ggaggaaccggagcccggcctccaagaataaccatttttgagaatgtcttttgcacgaatgattgctgcccatgaaggtga |
203 |
Q |
| |
|
||| ||||| || || ||||||||||| ||||| ||||| || ||||| ||||| ||||||| || ||| |||||||| |
|
|
| T |
3882706 |
ggaagaacccgaacctggcctccaagagtaacctagtttgaatatatctttggcacggatgattgatgaccaagaaggtga |
3882626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University