View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4740_high_8 (Length: 201)

Name: NF4740_high_8
Description: NF4740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4740_high_8
NF4740_high_8
[»] chr5 (11 HSPs)
chr5 (51-186)||(8547454-8547589)
chr5 (55-170)||(9074125-9074240)
chr5 (55-166)||(1599691-1599802)
chr5 (52-170)||(8529538-8529656)
chr5 (60-170)||(8536110-8536220)
chr5 (94-164)||(2844444-2844514)
chr5 (94-164)||(2856277-2856347)
chr5 (94-164)||(2873887-2873957)
chr5 (94-164)||(2904393-2904463)
chr5 (67-161)||(11353898-11353992)
chr5 (67-161)||(11373401-11373495)
[»] scaffold0627 (1 HSPs)
scaffold0627 (51-185)||(5284-5418)
[»] chr6 (1 HSPs)
chr6 (52-182)||(16716983-16717113)
[»] chr7 (2 HSPs)
chr7 (54-170)||(48361239-48361355)
chr7 (51-166)||(35780428-35780544)
[»] chr4 (1 HSPs)
chr4 (52-170)||(9443699-9443817)


Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 51 - 186
Target Start/End: Complemental strand, 8547589 - 8547454
Alignment:
Q  51 cgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547589 cgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactg 8547490  T
Q  151 caagaattcacaatatcaaaatgatcacgatctctg 186  Q
    ||||||||||||||||||||||||||||||||||||    
T  8547489 caagaattcacaatatcaaaatgatcacgatctctg 8547454  T

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Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 55 - 170
Target Start/End: Complemental strand, 9074240 - 9074125
Alignment:
Q  55 gtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaag 154  Q
    ||||||||| |||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| || ||| ||||||    
T  9074240 gtagcttcaggaagtcttatgaactcccctgtgactgggttgcagatcactgaagggtttccggtagttggttcagacaaacaaagtaaaccattgcaag 9074141  T
Q  155 aattcacaatatcaaa 170  Q
    ||||||||||||||||    
T  9074140 aattcacaatatcaaa 9074125  T

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Target: chr5; HSP #3
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 55 - 166
Target Start/End: Complemental strand, 1599802 - 1599691
Alignment:
Q  55 gtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaag 154  Q
    |||| |||| ||||||||||||||||||| |||||||| |||||||||||||| |||||||||  |  ||| |||||||||||||| || ||| ||||||    
T  1599802 gtagattcaggaagtcttatgaactccccagtgattgggttgcagatcactaatgggtttccgaaatatgggtcagacaaacaaagtaaaccattgcaag 1599703  T
Q  155 aattcacaatat 166  Q
    ||||||||||||    
T  1599702 aattcacaatat 1599691  T

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Target: chr5; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 8529538 - 8529656
Alignment:
Q  52 gtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgc 151  Q
    ||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||  ||||||||   || ||| |||||||||||||| || ||| |||    
T  8529538 gtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactattgggtttccaaaagatgggtcagacaaacaaagtaaaccattgc 8529637  T
Q  152 aagaattcacaatatcaaa 170  Q
    |||||||||||||||||||    
T  8529638 aagaattcacaatatcaaa 8529656  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 60 - 170
Target Start/End: Original strand, 8536110 - 8536220
Alignment:
Q  60 ttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattc 159  Q
    |||| |||||||||| |||||||| |||| ||| |||||||||||||| ||||||||   || ||| |||||||||||||| || ||| |||||||||||    
T  8536110 ttcaggaagtcttataaactccccagtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc 8536209  T
Q  160 acaatatcaaa 170  Q
    |||||||||||    
T  8536210 acaatatcaaa 8536220  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 2844514 - 2844444
Alignment:
Q  94 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 164  Q
    ||||| |||||||||||| ||||| ||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2844514 ttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2844444  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 2856347 - 2856277
Alignment:
Q  94 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 164  Q
    ||||| |||||||||||| ||||| ||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2856347 ttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2856277  T

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Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 2873957 - 2873887
Alignment:
Q  94 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 164  Q
    ||||| |||||||||||| ||||| ||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2873957 ttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2873887  T

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Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 2904463 - 2904393
Alignment:
Q  94 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 164  Q
    ||||| ||| |||||||| ||||||||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2904463 ttgcaaatcgctaaagggcttccggtagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2904393  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 11353992 - 11353898
Alignment:
Q  67 agtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcac 161  Q
    |||||||| ||||| ||| | ||||||||||| |  |||||| ||||| | |||  ||| ||||| ||||||||||||||| |||| ||||||||    
T  11353992 agtcttataaactcacctataattggattgcaaacaactaaatggtttacagtatatggctcagataaacaaagcaagccattgcaggaattcac 11353898  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 11373401 - 11373495
Alignment:
Q  67 agtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcac 161  Q
    |||||||| ||||| ||| | ||||||||||| |  |||||| ||||| | |||  ||| ||||| ||||||||||||||| |||| ||||||||    
T  11373401 agtcttataaactcacctataattggattgcaaacaactaaatggtttacagtatatggctcagataaacaaagcaagccattgcaggaattcac 11373495  T

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Target: scaffold0627 (Bit Score: 75; Significance: 9e-35; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 51 - 185
Target Start/End: Original strand, 5284 - 5418
Alignment:
Q  51 cgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactg 150  Q
    |||| |||||||| |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |     
T  5284 cgtattagcttcaggaagtcttatgaactcccccatgaatgggttgcagatcactaaagggtttccggtagttggttgagacaaacatagcaagccatta 5383  T
Q  151 caagaattcacaatatcaaaatgatcacgatctct 185  Q
    || ||||||||||||  ||||| ||| ||||||||    
T  5384 caggaattcacaatactaaaattatcgcgatctct 5418  T

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Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 16716983 - 16717113
Alignment:
Q  52 gtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgc 151  Q
    ||||||| |||| ||||||||||||| |||||  ||| ||| ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||| | |    
T  16716983 gtagtagtttcaggaagtcttatgaattcccccatgaatgggttgcagatcactatagggtttccagtagttggttcagacaaacatagcaagccattac 16717082  T
Q  152 aagaattcacaatatcaaaatgatcacgatc 182  Q
    | ||||||||||||| ||| | |||||||||    
T  16717083 atgaattcacaatattaaacttatcacgatc 16717113  T

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Target: chr7 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 54 - 170
Target Start/End: Complemental strand, 48361355 - 48361239
Alignment:
Q  54 agtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaa 153  Q
    ||||| |||| |||||||||||||||||||||||| ||| |||||||||||||| ||||||||   || ||| |||||||||||||| || ||| |||||    
T  48361355 agtagattcaggaagtcttatgaactcccctgtgactgggttgcagatcactaacgggtttcccaaagatggatcagacaaacaaagtaaaccattgcaa 48361256  T
Q  154 gaattcacaatatcaaa 170  Q
    |||||||||||||||||    
T  48361255 gaattcacaatatcaaa 48361239  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 51 - 166
Target Start/End: Original strand, 35780428 - 35780544
Alignment:
Q  51 cgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaaggg-tttccggtagttggttcagacaaacaaagcaagccact 149  Q
    ||||||||||||| ||||||||||||||||||| |||| ||| ||||| |||||||||||| ||| |||||  ||| | ||||||||||||||| ||| |    
T  35780428 cgtagtagcttcaggaagtcttatgaactcccccgtgactgggttgcaaatcactaaagggtttttcggtatatggattagacaaacaaagcaaaccatt 35780527  T
Q  150 gcaagaattcacaatat 166  Q
    ||||||||| |||||||    
T  35780528 gcaagaattgacaatat 35780544  T

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Target: chr4 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 9443699 - 9443817
Alignment:
Q  52 gtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgc 151  Q
    ||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||  ||||||||   || ||| |||||||||||||| || ||| |||    
T  9443699 gtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactattgggtttccaaaagatgggtcagacaaacaaagtaaaccattgc 9443798  T
Q  152 aagaattcacaatatcaaa 170  Q
    |||||||||||||||||||    
T  9443799 aagaattcacaatatcaaa 9443817  T

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