View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4740_low_1 (Length: 490)
Name: NF4740_low_1
Description: NF4740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4740_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 36 - 458
Target Start/End: Complemental strand, 1572804 - 1572382
Alignment:
| Q |
36 |
ctaacataccaaacctagagcctataagtaacacttttatatacgctaagtctatgcaatcaacatacttagcagaggttgcacgtctagtggttcactt |
135 |
Q |
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| T |
1572804 |
ctaacataccaaacctagagcctataagtaacacttttatatacgctaagtctatgcaatcaacatacttagtagaggttgcacgtctagtggttcactt |
1572705 |
T |
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| Q |
136 |
tcagcatgaaaaacacgnnnnnnnattacacatattctaattttcaattacgaaatgaactttctactnnnnnnnnngtacaaaattaacaatatcaaac |
235 |
Q |
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| T |
1572704 |
tcagcatgaaaaacacgtttttttattacacatattctaattttcaattacgaaatgaactttctactaaaaaaaaagtacaaaattaacaatatcaaac |
1572605 |
T |
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| Q |
236 |
acacaattaaaaagttttaaggcgttgattaagaattggacatcaattttagtactttacannnnnnncaaattaattattttctatatatccttttcta |
335 |
Q |
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| T |
1572604 |
acacaattaaaaagttttaaggcgttgattaagaattggaaatcaattttagtactttacatttttttcaaattaattattttctatatatccttttcta |
1572505 |
T |
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| Q |
336 |
tcttgagactttttcgataaaatttggtatggtatttctagttgtctttgttttattacggtacatcccgctcatgttgcagatacaccatatacttcaa |
435 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1572504 |
tcttgagactttttggagaaaatttggtatggtatttctagttgtctttgttttattacggtacatcccactcatgttgcagatacaccatatacttcaa |
1572405 |
T |
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| Q |
436 |
tttggaatttgatgtgattttcc |
458 |
Q |
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| T |
1572404 |
tttggaatttgatgtgattttcc |
1572382 |
T |
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