View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4740_low_2 (Length: 333)

Name: NF4740_low_2
Description: NF4740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4740_low_2
NF4740_low_2
[»] chr2 (4 HSPs)
chr2 (13-317)||(17366153-17366460)
chr2 (250-311)||(25864094-25864155)
chr2 (253-293)||(6565692-6565732)
chr2 (253-293)||(4009627-4009667)
[»] chr3 (2 HSPs)
chr3 (14-62)||(42182524-42182572)
chr3 (253-307)||(4649716-4649770)
[»] scaffold0078 (1 HSPs)
scaffold0078 (253-317)||(13592-13656)
[»] chr1 (2 HSPs)
chr1 (253-293)||(18424470-18424510)
chr1 (253-293)||(32637964-32638004)
[»] chr7 (1 HSPs)
chr7 (259-293)||(24040373-24040407)
[»] chr8 (2 HSPs)
chr8 (253-293)||(8908451-8908491)
chr8 (253-293)||(15962543-15962583)
[»] chr6 (1 HSPs)
chr6 (253-293)||(16663029-16663069)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 317
Target Start/End: Original strand, 17366153 - 17366460
Alignment:
Q  13 tgagaatggtggcaacccataacacaatcataaatctctccattccaacatttgtcctctttgcacgtgtactccctctggtcctccatataagaaggnn 112  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||       
T  17366153 tgagaatggcggcaacccataacacaatcttaaatctctccattccaacatctgtcctctttacacatgtactccctctggtcctccatataagaagaaa 17366252  T
Q  113 nnnnnn-cagcttaacaatacaaactaaattccatgaatactcatgaaca---tagtaattaaaattagacatcttagaatacacccactacctacttct 208  Q
           ||||||||||||||||||||||||||||||||||||| |||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  17366253 aaaaaaacagcttaacaatacaaactaaattccatgaatactcacgaacaacatagtaattaaaattagacatcttagaatacacccactacctacttct 17366352  T
Q  209 ttcaattttccatgttctcgacctcttcaccaacatcaacatattgttaaaatttcttctaatattttgtggactgcaatcaattacactttttggtttt 308  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  17366353 ttcaattttccatgttctcgacctcttcaccaacatcgacatattgtt-aaagttcttctaatattttgtggactgcaatcaattacaccttttggtttt 17366451  T
Q  309 aatgaaaac 317  Q
    |||||||||    
T  17366452 aatgaaaac 17366460  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 25864155 - 25864094
Alignment:
Q  250 tattgttaaaatttcttctaatattttgtggactgcaatcaattacactttttggttttaat 311  Q
    |||||||| ||||| |||||||||||||||||||||||||||||  |  |||||||||||||    
T  25864155 tattgttagaattttttctaatattttgtggactgcaatcaattttaggttttggttttaat 25864094  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 6565692 - 6565732
Alignment:
Q  253 tgttaaaatttcttctaatattttgtggactgcaatcaatt 293  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  6565692 tgttagaatttcttctaatattttgtgggctgcaatcaatt 6565732  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 4009627 - 4009667
Alignment:
Q  253 tgttaaaatttcttctaatattttgtggactgcaatcaatt 293  Q
    ||||| |||||||||||||||||||||| || |||||||||    
T  4009627 tgttagaatttcttctaatattttgtgggctacaatcaatt 4009667  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 42182524 - 42182572
Alignment:
Q  14 gagaatggtggcaacccataacacaatcataaatctctccattccaaca 62  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42182524 gagaatggcggcaacccataacacaatcataaatctctccattccaaca 42182572  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 4649770 - 4649716
Alignment:
Q  253 tgttaaaatttcttctaatattttgtggactgcaatcaattacactttttggttt 307  Q
    ||||| ||||||||||||||||||||||  ||||||||||||  | |||||||||    
T  4649770 tgttagaatttcttctaatattttgtgggttgcaatcaattattcgttttggttt 4649716  T

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Target: scaffold0078 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 13592 - 13656
Alignment:
Q  253 tgttaaaatttcttctaatattttgtggactgcaatcaattacactttttggttttaatgaaaac 317  Q
    ||||| ||||||||||||||||||||||  |||||||||||     |||||||||||||||||||    
T  13592 tgttagaatttcttctaatattttgtgggatgcaatcaattgttggttttggttttaatgaaaac 13656  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 18424510 - 18424470
Alignment:
Q  253 tgttaaaatttcttctaatattttgtggactgcaatcaatt 293  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  18424510 tgttagaatttcttctaatattttgtgggctgcaatcaatt 18424470  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 32637964 - 32638004
Alignment:
Q  253 tgttaaaatttcttctaatattttgtggactgcaatcaatt 293  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  32637964 tgttagaatttcttctaatattttgtgggctgcaatcaatt 32638004  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 293
Target Start/End: Complemental strand, 24040407 - 24040373
Alignment:
Q  259 aatttcttctaatattttgtggactgcaatcaatt 293  Q
    |||||||||||||||||||||| ||||||||||||    
T  24040407 aatttcttctaatattttgtgggctgcaatcaatt 24040373  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 8908451 - 8908491
Alignment:
Q  253 tgttaaaatttcttctaatattttgtggactgcaatcaatt 293  Q
    ||||| |||||||||||||||||||||| || |||||||||    
T  8908451 tgttagaatttcttctaatattttgtgggctacaatcaatt 8908491  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 15962583 - 15962543
Alignment:
Q  253 tgttaaaatttcttctaatattttgtggactgcaatcaatt 293  Q
    ||||| |||||||||||||||||||||  ||||||||||||    
T  15962583 tgttagaatttcttctaatattttgtgtgctgcaatcaatt 15962543  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 16663029 - 16663069
Alignment:
Q  253 tgttaaaatttcttctaatattttgtggactgcaatcaatt 293  Q
    ||||| |||||||||||||||||||||| || |||||||||    
T  16663029 tgttagaatttcttctaatattttgtgggctacaatcaatt 16663069  T

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