View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4741-Insertion-1 (Length: 1054)
Name: NF4741-Insertion-1
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4741-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 5e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 36 - 209
Target Start/End: Original strand, 22007032 - 22007205
Alignment:
| Q |
36 |
taaactctatcatcttttcttcaattggtgctaccacaactttttctctaannnnnnnagtcctaattttatattgtcttgtgtccacttgtccatcata |
135 |
Q |
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| T |
22007032 |
taaactctgtcatcttttctttaattggtgctactgcgactttttctctaattcttttagtcctaattctatattgtattgtgtccactcgtccatcata |
22007131 |
T |
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| Q |
136 |
acattgtcatctcaagaacattggatttaattccttgttggctaattaacaaccaccatttagactatcctatt |
209 |
Q |
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| T |
22007132 |
acattgtcatctcaagaacattggatttaattccttgttggctaattaacaaccagcatttagactatcctatt |
22007205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 114 - 214
Target Start/End: Original strand, 22049489 - 22049589
Alignment:
| Q |
114 |
ttgtgtccacttgtccatcataacattgtcatctcaagaacattggatttaattccttgttggctaattaacaaccaccatttagactatcctattacaa |
213 |
Q |
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| T |
22049489 |
ttgtgtccactcgtccatcataacattgtcatctcaagaatattggattgaattccttgttggctaattaacaaccagcatttagactatcctattacaa |
22049588 |
T |
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| Q |
214 |
a |
214 |
Q |
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| T |
22049589 |
a |
22049589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 5e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 40 - 214
Target Start/End: Complemental strand, 538780 - 538608
Alignment:
| Q |
40 |
ctctatcatcttttcttcaattggtgctaccacaactttttctctaannnnnnnagtcctaattttatattgtctt------gtgtccacttgtccatca |
133 |
Q |
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| T |
538780 |
ctctatcatctttccttcaattggtgctaccgcaactttttct-taatacttttagtcctaattcaatattgtcttatgtgtgtgtccacttgtgcatca |
538682 |
T |
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| Q |
134 |
taacattgtcatctcaagaacattggatttaattccttgttggctaattaacaaccaccatttagactatcctattacaaa |
214 |
Q |
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| T |
538681 |
taa-------atctccagaacattggatttaattcctcgttggctagttaacatccagcatttagaccattctattacaaa |
538608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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