View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4741-Insertion-12 (Length: 275)
Name: NF4741-Insertion-12
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4741-Insertion-12 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 275
Target Start/End: Original strand, 38034042 - 38034309
Alignment:
| Q |
8 |
ctcagatgtaagataagtgtatataagtttgattgcttgagtgatttgtgattgttgtgaaggaggaccctatatttatagtttccaagagtttgttgaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38034042 |
ctcagatgtaagataagtgtatataagtttgattgcttgagtgatttgtgattgttgtgaaggaggaccctatatttatagtttccaagagtttgttgaa |
38034141 |
T |
|
| Q |
108 |
atccctttgctagagaaatgattgttaaaaggccggggcccatgagatgagagatcacatagtgttgtcttagatgccactattaaggatcagtaagttc |
207 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
38034142 |
atccctttgctagagaaatgattgttataaggccggggcccatgagatgagagatcacatggtgttgtcttagatgccactattaaggatcaataagttc |
38034241 |
T |
|
| Q |
208 |
tataagagtgaaaaccctatctttagaatgaaaggatcatgataaactcaatgcttgtacaatatcta |
275 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38034242 |
tataagagtgaaaaccctatctttagaatgaaaggctcatgataaactcaatgcttgtacaatatcta |
38034309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 38037056 - 38037319
Alignment:
| Q |
8 |
ctcagatgtaagataagtgtatataagtttgattgcttgagtgatttgtgattgttgtgaaggaggaccctatatttatagtttccaagagtttgttgaa |
107 |
Q |
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|||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
38037056 |
ctcaaatgtaagataaatgtatataagtttgtttgcttgagtgatttgtgattgttgtgaaggaggacattatatttatagtttccaagagttttttgaa |
38037155 |
T |
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| Q |
108 |
atccctttgctagagaaatgattgttaaaaggccggggcccatgagatgagagatcacatagtgttgtcttagatgccactattaaggatcagtaagttc |
207 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| |
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| T |
38037156 |
atccctttgctagagaaatgattgttaaaaggacggggcccatgagatgagagatcacatggtgttgtcttagatgcctctattaaggatcaataagttc |
38037255 |
T |
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| Q |
208 |
tataagagtgaaaaccctatctttagaatgaaaggatcatgataaactcaatgcttgtacaata |
271 |
Q |
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||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||||| |
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| T |
38037256 |
tataagagtgaaaaccctatcttcagcatgaaaggctcatggtaaactcaatgcttgtacaata |
38037319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 8 - 270
Target Start/End: Original strand, 38040343 - 38040605
Alignment:
| Q |
8 |
ctcagatgtaagataagtgtatataagtttgattgcttgagtgatttgtgattgttgtgaaggaggaccctatatttatagtttccaagagtttgttgaa |
107 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||| |
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| T |
38040343 |
ctcagatgtaagataaatgtatataagtttgattgtttgagtgatttgtgattgttgtgaaggaggacactatatttatagtttacaagagtttcttgaa |
38040442 |
T |
|
| Q |
108 |
atccctttgctagagaaatgattgttaaaaggccggggcccatgagatgagagatcacatagtgttgtcttagatgccactattaaggatcagtaagttc |
207 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||| ||||||| |
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| T |
38040443 |
atccctttgctagagaaataattgttaaaaggacggggcccatgagatgagagatcacatggtgttgtcttggatgccagtattaaggatcaataagttc |
38040542 |
T |
|
| Q |
208 |
tataagagtgaaaaccctatctttagaatgaaaggatcatgataaactcaatgcttgtacaat |
270 |
Q |
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|||||||||||||||| | ||| |||||||||| || || ||||||||| ||||||||||| |
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| T |
38040543 |
aataagagtgaaaaccccacttttggaatgaaaggttcctgttaaactcaaagcttgtacaat |
38040605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 8 - 266
Target Start/End: Complemental strand, 50909837 - 50909579
Alignment:
| Q |
8 |
ctcagatgtaagataagtgtatataagtttgattgcttgagtgatttgtgattgttgtgaaggaggaccctatatttatagtttccaagagtttgttgaa |
107 |
Q |
| |
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|||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||||||| |||||||| ||||| |
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| T |
50909837 |
ctcagatgtaagataaaagtatccaagtttgattgcttgagtgatttgtgagtgttgtgaatgaggacacaatatttatagtttctaagagtttcttgaa |
50909738 |
T |
|
| Q |
108 |
atccctttgctagagaaatgattgttaaaaggccggggcccatgagatgagagatcacatagtgttgtcttagatgccactattaaggatcagtaagttc |
207 |
Q |
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|
||||||||| |||||||||||||| ||||||| |||| ||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
50909737 |
atccctttgttagagaaatgattgctaaaaggatgggggccatgagatgagatatcacatggggttgtcttagatgccactattaaggatcagtaagttc |
50909638 |
T |
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| Q |
208 |
tataagagtgaaaaccctatctttagaatgaaaggatcatgataaactcaatgcttgta |
266 |
Q |
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|||||||||||||||| | |||| |||||||||| ||||| ||||||||||||||||| |
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| T |
50909637 |
aataagagtgaaaaccccacctttggaatgaaaggttcatgttaaactcaatgcttgta |
50909579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 38029028 - 38029242
Alignment:
| Q |
8 |
ctcagatgtaagataagtgtatataagtttgattgcttgagtgatttgtgattgttgtgaaggaggaccctatatttatagtttccaagagtttgttgaa |
107 |
Q |
| |
|
||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||| |
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| T |
38029028 |
ctcagatataagataagtgtataaaagattgattgcttgagtgatttgtgattgttgtgaaggaggacactgtatttatagtttccaagagttttttgaa |
38029127 |
T |
|
| Q |
108 |
atccctttgctagagaaatgattgttaaaaggccggggcccatgagatgagagatcacatagtgttgtcttagatgccactattaaggatcagtaagttc |
207 |
Q |
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||||||||||||| ||| ||||||||||||| |||||||||||| ||||||||||| | |||||||||||||| |||| |||||||| ||||||| |
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| T |
38029128 |
atccctttgctagggaattgattgttaaaagaatagggcccatgagacaagagatcacatgggattgtcttagatgcctctatcaaggatcaataagttc |
38029227 |
T |
|
| Q |
208 |
tataagagtgaaaac |
222 |
Q |
| |
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||||||||| |||| |
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| T |
38029228 |
aataagagtgcaaac |
38029242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 55084661 - 55084443
Alignment:
| Q |
9 |
tcagatgtaagataagtgtatataagtttgattgcttgagtgatttgtgattgttgtgaaggaggaccctatatttatagtttccaagagtttgttgaaa |
108 |
Q |
| |
|
|||||| ||||| || |||| ||| |||| |||| ||||| |||||||| |||||||| |||||| | |||||||||||| ||||||||| |||||| |
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| T |
55084661 |
tcagatttaagaaaaaggtatctaaatttgtttgcctgagtaatttgtgaa-gttgtgaaagaggacaatgtatttatagttttcaagagtttattgaaa |
55084563 |
T |
|
| Q |
109 |
tccctttgctagagaaatgattgttaaaaggccggggcccatgagatgagagatcacatagtgttgtcttagatgccactattaaggatcagtaagttct |
208 |
Q |
| |
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| | |||||| ||||||||| ||||||| | |||||| |||||| |||||| |||| ||||||||||||||||| |||| ||| |||| ||||||| |
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| T |
55084562 |
ttcatttgcttgagaaatgactgttaaattgatggggccaatgagacaagagatgacatggtgttgtcttagatgcctctatcaagaatcaataagttca |
55084463 |
T |
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| Q |
209 |
ataagagtgaaaaccctatc |
228 |
Q |
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||||||||| ||||| |||| |
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| T |
55084462 |
ataagagtgcaaaccatatc |
55084443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 177
Target Start/End: Original strand, 38031616 - 38031755
Alignment:
| Q |
35 |
tttgattgcttgagtgatttgtgattgttgtgaaggaggaccctatatttatagtttccaagagtttgttgaaatccctttgctagagaaatgattgtta |
134 |
Q |
| |
|
|||| |||||||| |||||||||| ||||||||| ||||| | ||||||||| || |||| | | ||||||| | |||| |||| |||||||||||| |
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| T |
38031616 |
tttgtttgcttgaatgatttgtgaa-gttgtgaagaaggacagtgtatttatagatttcaagtatct-ttgaaattcatttgttaga-aaatgattgtta |
38031712 |
T |
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| Q |
135 |
aaaggccggggcccatgagatgagagatcacatagtgttgtct |
177 |
Q |
| |
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||| | ||||||||||||| ||||||||||| || |||||| |
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| T |
38031713 |
aaatgatggggcccatgagacaagagatcacatggtattgtct |
38031755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 21605016 - 21605233
Alignment:
| Q |
8 |
ctcagatgtaagataagtgtatataagtttgattgcttgagtgatttgtgattgttgtgaaggagga---ccctatatttatagtttccaagagtttgtt |
104 |
Q |
| |
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||||||| |||||||| |||||| ||| | ||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||| || |
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| T |
21605016 |
ctcagatataagataaatgtataaaagatcgattgcttgagtgatttgtgattgttgtgaaggaggaggacactgtatttatagtttccaagagtttttt |
21605115 |
T |
|
| Q |
105 |
gaaatccctttgctagagaaatgattgttaaaaggccggggcccatgagatgagagatcacatagtgttgtcttagatgccactattaaggatcagtaag |
204 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| ||||| |||||| ||||||||||| | |||||||||||||| |||| |||||||| |||| |
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| T |
21605116 |
gaaatccctttgctagggaaatgattgttaaaagaatagggcctatgagacaagagatcacatgggattgtcttagatgcctctatcaaggatcaataag |
21605215 |
T |
|
| Q |
205 |
ttctataagagtgaaaac |
222 |
Q |
| |
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||| ||||||||| |||| |
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| T |
21605216 |
ttcaataagagtgcaaac |
21605233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 177
Target Start/End: Original strand, 21607585 - 21607725
Alignment:
| Q |
35 |
tttgattgcttgagtgatttgtgattgttgtgaaggaggaccctatatttatagtttccaagagtttgttgaaatccctttgctagagaaatgattgtta |
134 |
Q |
| |
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|||| |||||||| |||||||||| ||||||||||||||| | ||||||||| || |||| | | ||||||| | |||| |||| |||||||||||| |
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| T |
21607585 |
tttgtttgcttgaatgatttgtgaa-gttgtgaaggaggacagtgtatttatagatttcaagtatcttttgaaattcatttgttaga-aaatgattgtta |
21607682 |
T |
|
| Q |
135 |
aaaggccggggcccatgagatgagagatcacatagtgttgtct |
177 |
Q |
| |
|
||| | |||| |||||||| ||||||||||| || |||||| |
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| T |
21607683 |
aaatgatggggaccatgagacaagagatcacatggtattgtct |
21607725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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