View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4741-Insertion-2 (Length: 754)
Name: NF4741-Insertion-2
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4741-Insertion-2 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 645; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 8 - 754
Target Start/End: Complemental strand, 34109952 - 34109204
Alignment:
| Q |
8 |
ctgcctatctttcaatatagacaatacctttttaacatcccttgccgtgttcatcggagtaacaagactactggatctagcaattttctcttctctatca |
107 |
Q |
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| T |
34109952 |
ctgcctatctttcaatatagacaatacctttttaacatcccttgccgtgttcatcggagtaacaagactgctggatctagcaattttctcttctctatca |
34109853 |
T |
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| Q |
108 |
taaatctctccttggaaacaaggtaaacaacaacatttccaccatgggactttggagtgtttgtttactgcatctttcccttgtatcagttcttctatta |
207 |
Q |
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| T |
34109852 |
taaatctctccttggaaacaaggtaaacaacaacatttccaccatgggactttggagtgtttgtttactgcatctttcccttgtatcagttcttctatta |
34109753 |
T |
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| Q |
208 |
acatctctgtttcttccatcggatgatccaatttctcatttaatagtctcatttcttcagctactggcgtgatccgatccaccagagagtcgaggttttt |
307 |
Q |
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| T |
34109752 |
acatctctgtttcttccatcggatgatccaatttctcgtttaatagtctcatttcttcagctactggcgtgatccgatccaccagagagtcgaggttttt |
34109653 |
T |
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| Q |
308 |
gcgtgaggttttgaacatgaaagctttggatatctggtttgtgactggttgcatcccttcttgaaccactgcgccaagaaatgcccctccaatcaactct |
407 |
Q |
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| T |
34109652 |
gcgtgaggttttgaacatgaaagctttggatatctggtttgtgactggttgcatcccttcttgaaccactgcgccaagaaatgcccctccaatcaactct |
34109553 |
T |
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| Q |
408 |
cctgccataactggatatctggtttgtgactggttgcatcccttcttgatgaagaaacttttcagttcaatgatttctctaggtttttctttcttccaat |
507 |
Q |
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| T |
34109552 |
cctgccataactggata--tgaaatg-aaatgggatcaacacctcttgatgaagaaacttttcagttcaatgatttctctaggtttttctttcttccaat |
34109456 |
T |
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| Q |
508 |
c-----aatgaaactaatataatatgagaatgcagtttctaggaaattcttgtctagtattgtttcgaattaaagattaaagaaatctattatttttggc |
602 |
Q |
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| T |
34109455 |
caatgaaatgaaactaatataatatgagaatgcagtttcaaggaaattcttgtctagtattgtttcgaattaaagattaaagaaatctattatttttggc |
34109356 |
T |
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| Q |
603 |
agaatttattaagaattaagaaaaaagagaccacaagtgtgaaagctcatagcatagtcaactcaataacatagtcagctcataacatagtcaactcatt |
702 |
Q |
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| T |
34109355 |
agaatttattaagaattaagaaaaaagagaccacaagtgtgaaagctcataacatagtcaactcaataacatagtcagctcataacatagtcaactcatt |
34109256 |
T |
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| Q |
703 |
aacatttcttaagagtttcttaaagatttctattaagaatttcttaatatag |
754 |
Q |
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| T |
34109255 |
aacatttctcaagagtttcttaaagatgtctattaagaatttcttaatatag |
34109204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 38 - 425
Target Start/End: Complemental strand, 34121766 - 34121379
Alignment:
| Q |
38 |
tttaacatcccttgccgtgttcatcggagtaacaagactactggatctagcaattttctcttctctatcataaatctctccttggaaacaaggtaaacaa |
137 |
Q |
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| T |
34121766 |
tttaacatctcttgccgtgttcatcggggtaacaaggctacaggttctagcaattttctcttccttagcttgaagttctccttggaagcaaggtagacaa |
34121667 |
T |
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| Q |
138 |
caacatttccaccatgggactttggagtgtttgtttactgcatctttcccttgtatcagttcttctattaacatctctgtttcttccatcggatgatcca |
237 |
Q |
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| T |
34121666 |
caaaatttccaccaaggaactttggagtgtttgttaactacctctttcccttgtttaagttcttccattagcacttttgtttcttcctttggacgatcca |
34121567 |
T |
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| Q |
238 |
atttctcatttaatagtctcatttcttcagctactggcgtgatccgatccaccagagagtcgaggtttttgcgtgaggttttgaacatgaaagctttgga |
337 |
Q |
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| T |
34121566 |
agttttcatttaatcgttcaatttcttctgctgctggcttgattcgttccacgagagagtcaacgatttttcgtgtttttttgaacttcaaacctttgga |
34121467 |
T |
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| Q |
338 |
tatctggtttgtgactggttgcatcccttcttgaaccactgcgccaagaaatgcccctccaatcaactctcctgccataactggatat |
425 |
Q |
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| T |
34121466 |
tatttgatttgtgaatggttttgctccttcttgaaccactgcgccaagaaatgcccctccaaccaactctcctgccataactggatat |
34121379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 507 - 668
Target Start/End: Complemental strand, 34121314 - 34121148
Alignment:
| Q |
507 |
tcaatgaaactaatataatatgagaatgcagtttctaggaaattcttgtctagtattgtttcgaattaaagattaaagaaatcta-ttatttttggcaga |
605 |
Q |
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| T |
34121314 |
tcaatgaaactaatataatatgaaaaggtagcttctaggaaattcttgtctaataatgctagtagtgaaagattaaagatgtttatttatttttggcaga |
34121215 |
T |
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| Q |
606 |
atttattaagaattaag--aaaaaagagac-cacaagtgtg-aaagctcatagcatagtcaactcaa |
668 |
Q |
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| T |
34121214 |
atttcttaagaattaaggaaaaaaatagacttacaagtgtgaaaagcacataacatagtcaactcaa |
34121148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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