View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4741-Insertion-3 (Length: 745)
Name: NF4741-Insertion-3
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4741-Insertion-3 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 51039279 - 51039019
Alignment:
| Q |
16 |
cttcttctagaaatgaaatttgtttgtttcagttccgttgaccgtccaagttgcaaaaccagttgtgcataactctcctccatcagttgacgaggttttc |
115 |
Q |
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| T |
51039279 |
cttcttctagaaatgaaatttgtttgtttcagttccgttgaccgtccaagttgcaaaaccagttgtacataactctcctccatcagttgacgaggttttc |
51039180 |
T |
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| Q |
116 |
aagtttcaacactcattttcgtttttcttcttcatttgcttgtttaatccattaacaattttatagcaggtgattttgaagtcttgtccaaagaaagtca |
215 |
Q |
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| T |
51039179 |
aagtttcaacactcattttcgattttcttcttcatttgcttgtttaat-cattaacaattttatagcaggtgattttgaagtcttgtccaaagaaagtca |
51039081 |
T |
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| Q |
216 |
ttgtgaacttcacagatttgctcaaggaggagaacctctatctaacaatagaggtaattata |
277 |
Q |
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| T |
51039080 |
ttgtgaacttcacagatttgctcaaggaggagaacctctatctaacaatagaggtaattata |
51039019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 520 - 745
Target Start/End: Complemental strand, 51037411 - 51037186
Alignment:
| Q |
520 |
atgattagtattgtatctaatatctagagaataattatatttattgattttgagcgaaggtgatcaaggatggctgcctgtattgattttgagcttgaag |
619 |
Q |
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| T |
51037411 |
atgattagtattgtatctaatatctagagaataattatatttattgattttgagcgaaggtgatcaaggatggctgcctgtattgattttgagcttgaag |
51037312 |
T |
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| Q |
620 |
gaaagcgataagcagacaagaagacctgcagttgttttccttcacagtacaaattcgcataaagaatctctgcgtccattgcttgaggttattataccgc |
719 |
Q |
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| T |
51037311 |
gaaagcgataagcagacaagaagacctgcagttgttttccttcacagtacaaattcgcataaagaatctctgcgtccattgcttgaggttattataccgc |
51037212 |
T |
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| Q |
720 |
attttcactgcttcactcattgctca |
745 |
Q |
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| T |
51037211 |
attttcactgcttcactcattgctca |
51037186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 575 - 709
Target Start/End: Complemental strand, 51045256 - 51045122
Alignment:
| Q |
575 |
gaaggtgatcaaggatggctgcctgtattgattttgagcttgaaggaaagcgataagcagacaagaagacctgcagttgttttccttcacagtacaaatt |
674 |
Q |
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| T |
51045256 |
gaaggagatcaaggacggttgcctgtgttgattttgagcttgaaggaaagcgataagcagacaagaagacctgcagttgttttccttcacagtacaaaca |
51045157 |
T |
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| Q |
675 |
cgcataaagaatctctgcgtccattgcttgaggtt |
709 |
Q |
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| T |
51045156 |
agtataaagaatatctgcgtccgttgcttgaggtt |
51045122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 396 - 465
Target Start/End: Complemental strand, 51037535 - 51037466
Alignment:
| Q |
396 |
aaaagtatatcgattaattgagagagaattgccattacatacaataaagcctatttttcaatcagaacaa |
465 |
Q |
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| T |
51037535 |
aaaagtatatcgattaattgagagataattgccattacatacaataaagcctatttttcaatcagaacaa |
51037466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 344 - 404
Target Start/End: Complemental strand, 51038952 - 51038892
Alignment:
| Q |
344 |
ggtctagtatttacaattcttgatggaactcatagatgagagaaaagcatagaaaagtata |
404 |
Q |
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| T |
51038952 |
ggtctagtatttacaattcttgatggaactcatagatgagagaaaagcatagaaaaatata |
51038892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 51045481 - 51045417
Alignment:
| Q |
36 |
tgtttgtttcagttccgttgaccgtccaagttgcaaaaccagttgtgcataactctcctccatca |
100 |
Q |
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| T |
51045481 |
tgtttgtttcagttcctttaaccgtccaagtcgcaaaaccagtggtgcataactctcctccatca |
51045417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 276
Target Start/End: Complemental strand, 51045405 - 51045316
Alignment:
| Q |
187 |
gattttgaagtcttgtccaaagaaagtcattgtgaacttcacagatttgctcaaggaggagaacctctatctaacaatagaggtaattat |
276 |
Q |
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| T |
51045405 |
gattatgaaatcatgtccaaagaaagatattccgaacttcaatgatttgctaaagcaggagaatctctacttaacaatagaggtagttat |
51045316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 36711 - 36652
Alignment:
| Q |
354 |
ttacaattcttgatggaactcatagatgagagaaaagcatagaaaagtatatcgattaat |
413 |
Q |
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| T |
36711 |
ttacaattcttgatagaactcatacatgagagaaaagtatagaaaaatataatgattaat |
36652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 43182348 - 43182301
Alignment:
| Q |
354 |
ttacaattcttgatggaactcatagatgagagaaaagcatagaaaagt |
401 |
Q |
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| T |
43182348 |
ttacaattcttgatagaactcataattgagagaaaagtatagaaaagt |
43182301 |
T |
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