View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4741-Insertion-4 (Length: 628)

Name: NF4741-Insertion-4
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4741-Insertion-4
NF4741-Insertion-4
[»] chr4 (29 HSPs)
chr4 (8-384)||(7739740-7740117)
chr4 (517-628)||(7739543-7739654)
chr4 (20-137)||(13999805-13999923)
chr4 (18-256)||(6162056-6162294)
chr4 (18-256)||(20192705-20192944)
chr4 (18-133)||(53981902-53982018)
chr4 (18-257)||(12659302-12659541)
chr4 (33-133)||(2924150-2924250)
chr4 (16-137)||(26996960-26997082)
chr4 (18-134)||(12746807-12746924)
chr4 (18-257)||(16325829-16326069)
chr4 (18-185)||(22748692-22748860)
chr4 (18-222)||(1874138-1874347)
chr4 (16-137)||(20275673-20275794)
chr4 (40-126)||(53529523-53529609)
chr4 (40-137)||(19570337-19570434)
chr4 (18-222)||(30673845-30674054)
chr4 (40-222)||(23200353-23200539)
chr4 (18-136)||(911079-911197)
chr4 (168-255)||(19581994-19582081)
chr4 (32-129)||(3166803-3166899)
chr4 (18-222)||(12435492-12435697)
chr4 (18-222)||(42410915-42411120)
chr4 (33-222)||(4393899-4394091)
chr4 (18-137)||(25691425-25691548)
chr4 (209-256)||(20198069-20198116)
chr4 (160-222)||(29333588-29333650)
chr4 (196-254)||(53982081-53982139)
chr4 (33-89)||(24858130-24858186)
[»] chr7 (19 HSPs)
chr7 (18-260)||(25498862-25499104)
chr7 (18-260)||(557981-558224)
chr7 (18-256)||(32148284-32148523)
chr7 (18-256)||(16648230-16648469)
chr7 (18-256)||(17622591-17622830)
chr7 (18-133)||(42162491-42162607)
chr7 (18-133)||(34326102-34326218)
chr7 (49-256)||(42208732-42208939)
chr7 (211-382)||(11726487-11726661)
chr7 (33-258)||(26456957-26457183)
chr7 (18-222)||(340439-340648)
chr7 (18-222)||(8247914-8248123)
chr7 (18-137)||(5998129-5998249)
chr7 (74-137)||(22477226-22477289)
chr7 (18-133)||(20125074-20125190)
chr7 (18-137)||(29185333-29185452)
chr7 (73-133)||(7578385-7578445)
chr7 (102-136)||(9506491-9506525)
chr7 (103-137)||(25830619-25830653)
[»] chr3 (22 HSPs)
chr3 (18-256)||(3110622-3110860)
chr3 (18-256)||(2168764-2169003)
chr3 (18-256)||(13990639-13990878)
chr3 (18-256)||(23344183-23344422)
chr3 (18-260)||(13980765-13981008)
chr3 (18-256)||(40800751-40800990)
chr3 (18-256)||(9724736-9724976)
chr3 (18-222)||(49486870-49487079)
chr3 (33-137)||(17032945-17033049)
chr3 (18-222)||(21883228-21883437)
chr3 (18-257)||(15752610-15752850)
chr3 (79-214)||(15636446-15636581)
chr3 (64-136)||(44122262-44122334)
chr3 (65-136)||(12990783-12990854)
chr3 (152-256)||(20454561-20454664)
chr3 (33-129)||(27547029-27547125)
chr3 (40-131)||(26831006-26831097)
chr3 (40-104)||(7462438-7462502)
chr3 (209-260)||(13992097-13992148)
chr3 (51-133)||(10941910-10941992)
chr3 (147-257)||(29225225-29225335)
chr3 (152-293)||(52555564-52555708)
[»] scaffold0004 (2 HSPs)
scaffold0004 (18-256)||(345784-346023)
scaffold0004 (305-362)||(345696-345754)
[»] chr2 (23 HSPs)
chr2 (18-256)||(636089-636328)
chr2 (18-256)||(22430155-22430394)
chr2 (18-256)||(22435749-22435988)
chr2 (18-256)||(7910076-7910315)
chr2 (18-256)||(14898590-14898829)
chr2 (18-256)||(43776799-43777037)
chr2 (40-133)||(21289782-21289875)
chr2 (18-222)||(19437683-19437891)
chr2 (18-222)||(25231790-25231996)
chr2 (40-137)||(34573899-34573995)
chr2 (18-137)||(43287625-43287744)
chr2 (18-137)||(11311857-11311975)
chr2 (20-134)||(16443565-16443680)
chr2 (72-184)||(19089325-19089437)
chr2 (79-225)||(5836221-5836370)
chr2 (71-137)||(7385087-7385153)
chr2 (18-137)||(19912070-19912190)
chr2 (40-137)||(17319748-17319844)
chr2 (40-257)||(24053399-24053616)
chr2 (18-137)||(25445290-25445413)
chr2 (196-256)||(1525628-1525688)
chr2 (207-256)||(7917531-7917580)
chr2 (207-256)||(14893223-14893272)
[»] chr1 (20 HSPs)
chr1 (18-256)||(15716431-15716670)
chr1 (40-256)||(27179083-27179299)
chr1 (18-256)||(33493050-33493288)
chr1 (18-219)||(11441842-11442042)
chr1 (20-137)||(40274666-40274784)
chr1 (33-222)||(29547563-29547753)
chr1 (18-222)||(18535125-18535334)
chr1 (18-137)||(26028494-26028615)
chr1 (18-222)||(31093093-31093302)
chr1 (18-257)||(37356844-37357084)
chr1 (18-260)||(17721524-17721768)
chr1 (18-136)||(28519082-28519200)
chr1 (40-137)||(145622-145719)
chr1 (18-137)||(11659982-11660105)
chr1 (74-137)||(22576105-22576168)
chr1 (18-219)||(16168570-16168772)
chr1 (18-133)||(15552671-15552787)
chr1 (18-136)||(38990908-38991026)
chr1 (160-222)||(28519226-28519288)
chr1 (33-90)||(27163475-27163532)
[»] scaffold0124 (1 HSPs)
scaffold0124 (40-259)||(39273-39491)
[»] chr5 (19 HSPs)
chr5 (18-256)||(28367094-28367333)
chr5 (18-256)||(30957710-30957949)
chr5 (16-137)||(19780247-19780369)
chr5 (18-136)||(17945555-17945674)
chr5 (18-222)||(35264686-35264895)
chr5 (18-222)||(21171333-21171541)
chr5 (18-131)||(18080192-18080306)
chr5 (18-222)||(23053525-23053733)
chr5 (18-219)||(12026447-12026649)
chr5 (79-137)||(24213548-24213606)
chr5 (160-257)||(25365505-25365602)
chr5 (209-256)||(1536668-1536715)
chr5 (205-255)||(14664069-14664119)
chr5 (147-258)||(34648037-34648152)
chr5 (208-256)||(30963285-30963333)
chr5 (40-129)||(19699172-19699261)
chr5 (103-136)||(25365627-25365660)
chr5 (103-136)||(25365900-25365933)
chr5 (18-89)||(16673313-16673385)
[»] chr6 (5 HSPs)
chr6 (21-260)||(6932849-6933090)
chr6 (71-256)||(14855797-14855983)
chr6 (18-184)||(25397723-25397890)
chr6 (71-136)||(17270422-17270487)
chr6 (18-222)||(23427290-23427495)
[»] scaffold0014 (1 HSPs)
scaffold0014 (18-222)||(111679-111888)
[»] scaffold0102 (1 HSPs)
scaffold0102 (18-222)||(13830-14038)
[»] chr8 (14 HSPs)
chr8 (18-257)||(30714326-30714571)
chr8 (18-257)||(30722103-30722348)
chr8 (33-134)||(10738791-10738891)
chr8 (40-133)||(41048689-41048782)
chr8 (18-137)||(17909553-17909673)
chr8 (18-133)||(23429339-23429455)
chr8 (149-256)||(12756275-12756382)
chr8 (18-137)||(37209518-37209638)
chr8 (33-134)||(16845935-16846036)
chr8 (18-222)||(21247484-21247689)
chr8 (18-222)||(27679770-27679975)
chr8 (33-97)||(2534573-2534637)
chr8 (40-134)||(8509612-8509705)
chr8 (160-222)||(37209663-37209725)
[»] scaffold0066 (1 HSPs)
scaffold0066 (18-137)||(11401-11521)
[»] scaffold0169 (1 HSPs)
scaffold0169 (208-260)||(8694-8746)
[»] scaffold0087 (1 HSPs)
scaffold0087 (49-94)||(35896-35941)


Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 384
Target Start/End: Complemental strand, 7740117 - 7739740
Alignment:
Q  8 gaagagacatatgtgttctgccctctttttctttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaa 107  Q
    ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||    
T  7740117 gaagatacatatgtgttctgccctcttttttcttaaccatagttttatctcattgagtttttatggtaatgtttttaatgagatagattaccacacaaaa 7740018  T
Q  108 ggatgttgtactctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggaga 207  Q
     ||||||||||| |||||||||||||||||       ||| |||||||||||||||||||||||||||||  |||||| ||||||||||| |||||||||    
T  7740017 agatgttgtactttttttccttcactagaatttttttcaagtgggtttttcattagtaaagttttaatgaaccatattctcgatgaatattcaatggaga 7739918  T
Q  208 gtgttataaatattataaatggatgttcatatatcaattgggttattgggtcactattaactcatgcatacaattatgcttgtttcgcaagtcgttggtg 307  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7739917 gtgttataaatattataagtggatgttcatatatcaattgggttattgggtcactattaactcatgcatacaattatgcttgtttcgcaagtcgttgatg 7739818  T
Q  308 cttactcagcaagtcattgtttttctctataaatatagttc-catgtaacctaattgacaatataatagaataataga 384  Q
    |||| ||||||||||||| | |||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||    
T  7739817 cttattcagcaagtcattatatttctctataaacatagttcacatgtaacctaattgacaatataagagaataataga 7739740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 517 - 628
Target Start/End: Complemental strand, 7739654 - 7739543
Alignment:
Q  517 aatgtgaatatataaagcgtccgagaataattgaaaagataaattacaacctataataattaaggataagtattgagaatgacacctttatagttctagt 616  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7739654 aatgtgaatatgtaaagcgtccgagaataattgaaaagataaattacaacctataataattaaggataagaattgagaatgacacctttatagttctagt 7739555  T
Q  617 ttgtactatctg 628  Q
    ||||||||||||    
T  7739554 ttgtactatctg 7739543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 13999805 - 13999923
Alignment:
Q  20 gtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtac 118  Q
    ||||||||| |||||||||  |||||||| |||||||| ||||| |||||| |||||||||||||||||||| ||||||  |||||||||||||||||||    
T  13999805 gtgttctgcactctttttcccttaaccatggttttatcccattgggtttttctggtaagatttttaacgagacagattataacacaaaaggatgttgtac 13999904  T
Q  119 tctttttccttcactagaa 137  Q
    |||||||||||||||||||    
T  13999905 tctttttccttcactagaa 13999923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 6162056 - 6162294
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  |||||||||||||||||    
T  6162056 atgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgt 6162155  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||||| |||       | | ||||||||||  |||||| || |||||||| |||||    |||| | |||||| || ||||||||| |    
T  6162156 actctttttccttcactggaattttttcc-actgggtttttctctagtaaggtgttaatgaggcatatccgagatggacatccaagggggagtgttatga 6162254  T
Q  217 atattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| || ||||| | ||||||  ||||||||||||||    
T  6162255 atattacaagtggatatccatatagaaattgggttattgg 6162294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 20192944 - 20192705
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||  |||||||||  |||||||| |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  |||||||| ||||||||    
T  20192944 atgtgttctgtactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaatgatgttgt 20192845  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    |||||||||||||||||  ||       | | ||||||||||  |||||| ||||||||||| |||||     ||| | |||||| || ||||||||| |    
T  20192844 actctttttccttcactgaaattttttcccactgggtttttctctagtaaggttttaatgaggcatatccgatatggacatccaagggggagtgttatga 20192745  T
Q  217 atattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| || ||||||| |||||| |||||||||||||||    
T  20192744 atattacaagtggatgtccatatagcaattgggttattgg 20192705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 53981902 - 53982018
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  |||||||||||||||||    
T  53981902 atgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgt 53982001  T
Q  117 actctttttccttcact 133  Q
    |||||||||||||||||    
T  53982002 actctttttccttcact 53982018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 12659541 - 12659302
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  ||||||||  |||| || ||||| |||||  ||||||| |||||||||||  |||||| || ||| ||| || ||||    
T  12659541 atgtgttctgcactctttttcccttaaccatgtttttgtcccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaag-atattgt 12659443  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    |||||||||||||||||||||       | ||| ||||||||  |||||| ||||||||||| ||||| ||| ||| | |||||| || |||||||||||    
T  12659442 actctttttccttcactagaattttctcctattaggtttttctctagtaaggttttaatgaggcatatcttcaatggacatccaagggggagtgttataa 12659343  T
Q  217 atattataaatggatgttcatatatcaattgggttattggg 257  Q
    ||||||  | ||||||| || ||| ||| || |||||||||    
T  12659342 atattaatagtggatgtccaaatagcaaatgtgttattggg 12659302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 2924250 - 2924150
Alignment:
Q  33 tttttctttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcac 132  Q
    |||||| ||||||||||||||||| || || |||||  ||||||| ||||||| |||  ||||||  |||||||||||||||||||||||||||||||||    
T  2924250 tttttccttaaccatagttttatcccactgggttttcctggtaaggtttttaatgaggcagattatgacacaaaaggatgttgtactctttttccttcac 2924151  T
Q  133 t 133  Q
    |    
T  2924150 t 2924150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 26996960 - 26997082
Alignment:
Q  16 atatgtgttctgccctctttttctt-taaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgtt 114  Q
    ||||||||||||  ||||||||| | ||||||| |||||||  ||||| |||||  ||||||| |||||||||||  | ||||  |||||||||||||||    
T  26996960 atatgtgttctgaactctttttcctctaaccatggttttattccattgggttttcctggtaaggtttttaacgaggcaaattatgacacaaaaggatgtt 26997059  T
Q  115 gtactctttttccttcactagaa 137  Q
    |||||||||||||||| ||||||    
T  26997060 gtactctttttccttcgctagaa 26997082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 12746924 - 12746807
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| || || |||||| ||||||| ||||||| |||  ||||||  |||||||| ||||||||    
T  12746924 atgtgttctgcactctttttcccttaaccatggttttatcccactgggtttttctggtaaggtttttaatgaggcagattatgacacaaaatgatgttgt 12746825  T
Q  117 actctttttccttcacta 134  Q
    |||||||||| |||||||    
T  12746824 actctttttcattcacta 12746807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 16326069 - 16325829
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| ||||| |  ||||| |||||  ||||||| |||||||||||  |||||| || ||| ||| || ||||    
T  16326069 atgtgttctgcactctttttcccttaaccatggttttgttccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaag-atattgt 16325971  T
Q  117 actctttttccttcactagaa-nnnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttata 215  Q
    |||||||| ||||||||||||        | ||| ||||||||  |||||| ||||||||||| ||||| ||| ||| | |||||| || ||||||||||    
T  16325970 actcttttaccttcactagaatttttctcctattaggtttttctctagtaaggttttaatgaggcatatcttcaatggacatccaagggggagtgttata 16325871  T
Q  216 aatattataaatggatgttcatatatcaattgggttattggg 257  Q
    |||||||  | ||||||| || ||| ||| || |||||||||    
T  16325870 aatattaatagtggatgtccaaatagcaaatgtgttattggg 16325829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 22748692 - 22748860
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||| ||| |||||||||  |||||||| |||||||| || || |||||  ||||||| ||||||| |||  | ||||  |||||||||| ||||||    
T  22748692 atgtgttatgcactctttttcccttaaccatggttttatcccactgggttttcctggtaaggtttttaatgaggcaaattaagacacaaaaggttgttgt 22748791  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatatt 185  Q
    |||||||||||||||||||||       | |||| |||||||  |||||| ||||||||||| ||||||    
T  22748792 actctttttccttcactagaatttttttccattgagtttttctctagtaaggttttaatgaggcatatt 22748860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 1874347 - 1874138
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacaca---aaaggatgt 113  Q
    ||||||||||| |||||||||  |||||||| ||||| || ||||| |||||  ||||||| |||||||||||  |||||| || |||   ||||||| |    
T  1874347 atgtgttctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaaaaaggatat 1874248  T
Q  114 tgtactctttttccttcactagaa-nnnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgtt 212  Q
    ||||||||||||||||||||||||        | ||| ||||||||  |||||| ||||||| ||| |||||  || ||| | |||||| || |||||||    
T  1874247 tgtactctttttccttcactagaatttttctcctattaggtttttctctagtaaggttttaacgaggcatatcctcaatggacatccaagggggagtgtt 1874148  T
Q  213 ataaatatta 222  Q
    ||||||||||    
T  1874147 ataaatatta 1874138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 20275673 - 20275794
Alignment:
Q  16 atatgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgtt 114  Q
    |||||| |||||| ||| |||||  |||||||| |||||||| |||  ||||||  ||||||| ||||||| |||| ||||||  |||||||||||||||    
T  20275673 atatgttttctgcactccttttcccttaaccattgttttatcccatc-agttttcctggtaaggtttttaatgagacagattatgacacaaaaggatgtt 20275771  T
Q  115 gtactctttttccttcactagaa 137  Q
    ||||||||||| |||||||||||    
T  20275772 gtactcttttttcttcactagaa 20275794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 53529523 - 53529609
Alignment:
Q  40 ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttc 126  Q
    ||||||| |||||||||||| ||||||||  ||||||| |||||||||||  ||||||  |||||||| ||||||||||||||||||    
T  53529523 ttaaccaaagttttatctcactgagttttcttggtaaggtttttaacgaggcagattatgacacaaaaagatgttgtactctttttc 53529609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 19570337 - 19570434
Alignment:
Q  40 ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcactagaa 137  Q
    ||||| || |||||||| |||| || |||||||||||| |||||||||||||||||||  ||| | ||  |||||||||||||||| |||||||||||    
T  19570337 ttaactatggttttatcccattcagcttttatggtaagttttttaacgagatagattatgacatagaaacatgttgtactcttttttcttcactagaa 19570434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 30674054 - 30673845
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattacca--cacaaaagg-atgt 113  Q
    ||||||||||| |||||||||  ||||||||  |||| || ||||| |||||  ||||||| |||||||||||  | |||| ||  ||||||||| || |    
T  30674054 atgtgttctgcactctttttcccttaaccatgtttttgtcccattgggttttcctggtaaggtttttaacgaggcaaattatcatacacaaaagggatat 30673955  T
Q  114 tgtactctttttccttcactagaa-nnnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgtt 212  Q
    ||||||||||||||||||||||||        | ||| ||||||||  |||||| ||||||||||| |||||  || ||| | |||||| || |||||||    
T  30673954 tgtactctttttccttcactagaatttttctcctattaggtttttctctagtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgtt 30673855  T
Q  213 ataaatatta 222  Q
    ||||||||||    
T  30673854 ataaatatta 30673845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 23200353 - 23200539
Alignment:
Q  40 ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattacca--cacaaaagg-atgttgtactctttttccttcactaga 136  Q
    |||||||| ||||| || ||||| |||||  ||||||| |||||||||||  |||||| ||  ||||||||| || ||||||||||||||||||||||||    
T  23200353 ttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaaaagggatattgtactctttttccttcactaga 23200452  T
Q  137 a-nnnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataaatatta 222  Q
    |        | ||| ||||||||  |||||| ||||||||||| |||||  || ||| | ||| || || |||||||||||||||||    
T  23200453 atttttctcctattaggtttttctctagtaaggttttaatgaggcatatcctcaatggacatctaagggggagtgttataaatatta 23200539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 911197 - 911079
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  || ||||  |||||||| ||||| |||||  ||||||| |||||||||||  | |||   || ||||||||| ||||    
T  911197 atgtgttctgcactctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgt 911099  T
Q  117 actctttttccttcactaga 136  Q
    ||||||||||||||||||||    
T  911098 actctttttccttcactaga 911079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 168 - 255
Target Start/End: Original strand, 19581994 - 19582081
Alignment:
Q  168 gttttaatgagtcatattttcgatgaatatccaatggagagtgttataaatattataaatggatgttcatatatcaattgggttattg 255  Q
    ||||||||||| ||||| || |||| | ||| || |  ||||||||| ||| |||||| ||||||| |||||||||||||||||||||    
T  19581994 gttttaatgagacatatctttgatggacatctaaggaggagtgttatgaattttataagtggatgtccatatatcaattgggttattg 19582081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 3166899 - 3166803
Alignment:
Q  32 ctttttctttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttcctt 129  Q
    |||| |||||||| ||||||||||| |||||| ||||| ||||  | ||||||| |||| ||||| | |||||||  |||||| ||||||||||||||    
T  3166899 ctttctctttaacaatagttttatcccattgaattttt-tggtttggtttttaaggagaaagatttcaacacaaaccgatgttatactctttttcctt 3166803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 12435697 - 12435492
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  || ||||  |||||||| ||||| |||||  ||||||| |||||||||||  | |||   || ||||||||| ||||    
T  12435697 atgtgttctgcactctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgt 12435599  T
Q  117 actctttttccttcactagaannnnnnnca-attgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttata 215  Q
    ||||||||||||||||||||        |  |  |||||||   ||||||| ||||||||||| |||||  |||||| | |||||| || ||||||||||    
T  12435598 actctttttccttcactagattttttttcccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttata 12435499  T
Q  216 aatatta 222  Q
    |||||||    
T  12435498 aatatta 12435492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 42410915 - 42411120
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  || ||||  |||||||| ||||| |||||  ||||||| |||||||||||  | |||   || ||||||||| ||||    
T  42410915 atgtgttctgcactctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgt 42411013  T
Q  117 actctttttccttcactagaannnnnnnca-attgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttata 215  Q
    ||||||||||||||||||||        |  |  |||||||   ||||||| ||||||||||| |||||  |||||| | |||||| || ||||||||||    
T  42411014 actctttttccttcactagattttttttcccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttata 42411113  T
Q  216 aatatta 222  Q
    |||||||    
T  42411114 aatatta 42411120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 222
Target Start/End: Complemental strand, 4394091 - 4393899
Alignment:
Q  33 tttttctttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagat--taccacacaaaag-gatgttgtactctttttcctt 129  Q
    |||||| |||||||| |||||||| ||||  ||||| |  ||||| |||||||||||  ||||  |  |||||||||| ||| ||||||| |||||||||    
T  4394091 tttttccttaaccatggttttatcacattaggttttaaatgtaaggtttttaacgaggcagatattcacacacaaaagcgatattgtactatttttcctt 4393992  T
Q  130 cactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataaatatta 222  Q
    |||||||        | | || | |||||  |||||| |||||| ||||  ||||  |||||| | |||||||||||||||||||||||||||    
T  4393991 cactagatattttttccactgagattttctctagtaaggttttattgaggtatatcctcgatggacatccaatggagagtgttataaatatta 4393899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 25691548 - 25691425
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattacca--cacaaaagg-atgt 113  Q
    ||||||||||| |||||||||  |||||||  ||||| || ||||| |||||  | ||||| |||||||||||  |||||| ||  ||||||||| || |    
T  25691548 atgtgttctgcactctttttcccttaaccaaggttttgtcccattgtgttttcctagtaaggtttttaacgaggcagattatcatacacaaaagggatat 25691449  T
Q  114 tgtactctttttccttcactagaa 137  Q
    ||||| ||||||||||||||||||    
T  25691448 tgtacgctttttccttcactagaa 25691425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 256
Target Start/End: Complemental strand, 20198116 - 20198069
Alignment:
Q  209 tgttataaatattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| ||||||| |||||||||| |||||| |||||||||||||||    
T  20198116 tgttatgaatattacaaatggatgtccatatagcaattgggttattgg 20198069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 29333588 - 29333650
Alignment:
Q  160 ttagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataaatatta 222  Q
    ||||||| ||||||||||| |||||  |||||| | |||||| || |||||||||||||||||    
T  29333588 ttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatatta 29333650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 53982081 - 53982139
Alignment:
Q  196 atccaatggagagtgttataaatattataaatggatgttcatatatcaattgggttatt 254  Q
    |||||| || ||||||||| ||||||| || ||||||| |||||| |||||||||||||    
T  53982081 atccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttatt 53982139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 24858186 - 24858130
Alignment:
Q  33 tttttctttaaccatagttttatctcattgagtttttatggtaagatttttaacgag 89  Q
    |||||| || ||||| ||||| || || ||||||||| |||||||||||||||||||    
T  24858186 tttttccttcaccatggttttctcccactgagtttttctggtaagatttttaacgag 24858130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 4e-46; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 25498862 - 25499104
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  ||||||||||||| |||    
T  25498862 atgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgctgt 25498961  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    |||||||||||||||||||||       | ||||||||||||  |||||| ||||||||||| |||||  |||||| | |||||| || ||||||||| |    
T  25498962 actctttttccttcactagaattttttcc-attgggtttttctctagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttatga 25499060  T
Q  217 atattataaatggatgttcatatatcaattgggttattgggtca 260  Q
    ||||||||| ||||||| |||||| ||||| |||||||||||||    
T  25499061 atattataagtggatgtccatatagcaattaggttattgggtca 25499104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 558224 - 557981
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| ||||| |||||  ||||||| |||||||||||| | ||||  |||||||||||||||||    
T  558224 atgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgagacaaattataacacaaaaggatgttgt 558125  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||||| |||       | | ||||||||||  |||||| ||||||||||| |||||  |||||| | |||||| || ||||||||| |    
T  558124 actctttttccttcactggaattttttcccactgggtttttctctagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttatga 558025  T
Q  217 atattataaatggatgttcatatatcaattgggttattgggtca 260  Q
    ||||||||| |||||||  ||||| ||||| |||||||||||||    
T  558024 atattataagtggatgtctatataacaattcggttattgggtca 557981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 32148284 - 32148523
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  |||||||||||||||||    
T  32148284 atgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgt 32148383  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||| | |||       | | ||||||||||  |||||| ||||||||||| |||||    |||| | |||||| || ||||||||| |    
T  32148384 actctttttccttcattggaattttttcccactgggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatga 32148483  T
Q  217 atattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| || ||||||| |||||| |||||||||||||||    
T  32148484 atattacaagtggatgtccatataacaattgggttattgg 32148523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 16648230 - 16648469
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  |||||||||||||||||    
T  16648230 atgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgt 16648329  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||||| |||       | | ||||||||||  |||||| ||||||||||| |||||     ||| | |||||| || || |||||| |    
T  16648330 actctttttccttcactggaattttttcccactgggtttttctctagtaaggttttaatgagacatatccgaaatggacatccaagggggaatgttatga 16648429  T
Q  217 atattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| || ||||||| |||||| |||||||||||||||    
T  16648430 atattacaagtggatgtccatatagcaattgggttattgg 16648469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 17622591 - 17622830
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  |||||||||||||||||    
T  17622591 atgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgt 17622690  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||||| |||       | | ||||||||||  |||||| ||||||||||| |||||     ||| | |||||| || || |||||| |    
T  17622691 actctttttccttcactggaattttttcccactgggtttttctctagtaaggttttaatgagacatatccgaaatggacatccaagggggaatgttatga 17622790  T
Q  217 atattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| || ||||||| |||||| |||||||||||||||    
T  17622791 atattacaagtggatgtccatatagcaattgggttattgg 17622830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 42162607 - 42162491
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| ||||| |||||| ||||||| |||||||||||  ||||||  |||||||||||||||||    
T  42162607 atgtgttctgcactctttttcccttaaccatggttttatcccattgggtttttctggtaaggtttttaacgaggcagattataacacaaaaggatgttgt 42162508  T
Q  117 actctttttccttcact 133  Q
    |||||||||||||||||    
T  42162507 actctttttccttcact 42162491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 34326102 - 34326218
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||| |||||||||||||||||| | || |||||| || |||| ||||||| |||  ||||||  |||||||||||||||||    
T  34326102 atgtgttctgcactctttttctcttaaccatagttttatcttactgggtttttctgataaggtttttaatgaggcagattatgacacaaaaggatgttgt 34326201  T
Q  117 actctttttccttcact 133  Q
    |||||||||||||||||    
T  34326202 actctttttccttcact 34326218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 49 - 256
Target Start/End: Original strand, 42208732 - 42208939
Alignment:
Q  49 gttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcactagaannnnnnncaat 148  Q
    |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  ||||||||||||||||||||||||||||||||||  ||       | |     
T  42208732 gttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactgaaattttttcccac 42208831  T
Q  149 tgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataaatattataaatggatgttcatatatcaattgg 248  Q
    ||| ||||||  |||||| ||||||||||| ||| |    | || | |||||| || ||||||||| ||||||| || ||||||| |||||| |||||||    
T  42208832 tggatttttctctagtaaggttttaatgaggcatgtccgaggtggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgg 42208931  T
Q  249 gttattgg 256  Q
    ||||||||    
T  42208932 gttattgg 42208939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 211 - 382
Target Start/End: Complemental strand, 11726661 - 11726487
Alignment:
Q  211 ttataaatattataaatggatgttcatatatcaattgggttattggg--tcactattaactcatgcatacaattatgcttgtttcgcaagtcgttggtgc 308  Q
    |||| |||||||||| ||||| | |||||| ||| ||||||||||||   |||||||| ||||||||||| ||| |||| |||||  ||||| ||| |||    
T  11726661 ttatgaatattataagtggatatccatataacaactgggttattgggccacactattagctcatgcatactattttgctagtttccgaagtcattgatgc 11726562  T
Q  309 ttactcagcaagtcattgtttttctctataaatatagttc-catgtaacctaattgacaatataatagaataata 382  Q
    ||  |   ||||| ||||| |||||||||||||| || || |||||||||| |||||||| |||| |||||||||    
T  11726561 ttgtttctcaagttattgtatttctctataaatagagctcacatgtaaccttattgacaacataagagaataata 11726487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 33 - 258
Target Start/End: Complemental strand, 26457183 - 26456957
Alignment:
Q  33 tttttctttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcac 132  Q
    |||||| |||||||| |||||||| ||||| |||||| ||  ||| |||||||||||  |||||| |||| |||| ||| ||| ||||||||| ||||||    
T  26457183 tttttcattaaccatggttttatcccattgggtttttctgaaaaggtttttaacgaggcagattatcacataaaatgatattgcactcttttt-cttcac 26457085  T
Q  133 tagaannnnnnncaattg-ggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataaatattataaatggat 231  Q
    |||||       | |||| | ||||||  || ||| |||||||||| ||||||  |||||| | |||||| | ||| |||||| |||||||||| |||||    
T  26457084 tagaattttttaccattgagttttttctctaataaggttttaatgaatcatatcctcgatggacatccaaggaagaatgttatgaatattataagtggat 26456985  T
Q  232 gttcatata-tcaattgggttattgggt 258  Q
    || ||||||  ||||||| |||||||||    
T  26456984 gtccatataggcaattggattattgggt 26456957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 340648 - 340439
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattacca--cacaaaagg-atgt 113  Q
    ||||||||||| |||||||||  |||||||| ||||| || ||||| |||||  ||||||| |||||||||||  |||||| ||  ||||||||| || |    
T  340648 atgtgttctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaaaagggatat 340549  T
Q  114 tgtactctttttccttcactagaa-nnnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgtt 212  Q
    ||||||||||||||||||||||||        | ||| ||||||||  || ||| ||||||||||| |||||  || ||| | |||||| || |||||||    
T  340548 tgtactctttttccttcactagaatttttctcctattaggtttttctctaataaggttttaatgaggcatatcctcaatggacatccaagggggagtgtt 340449  T
Q  213 ataaatatta 222  Q
    ||||||||||    
T  340448 ataaatatta 340439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 8247914 - 8248123
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattacca--cacaaaagg-atgt 113  Q
    ||||||||||| |||||||||  |||||||| ||||| || ||||| |||||  || |||| |||||||||||  |||||| ||  ||||||||| || |    
T  8247914 atgtgttctgcactctttttcccttaaccatggttttgtcccattgggttttcctgataaggtttttaacgaggcagattatcatacacaaaagggatat 8248013  T
Q  114 tgtactctttttccttcactagaa-nnnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgtt 212  Q
    ||||||||||||||||||||||||        | ||| ||||||||  |||||| ||||||||||| |||||  || ||| | |||||| || |||||||    
T  8248014 tgtactctttttccttcactagaatttttctcctattaggtttttctctagtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgtt 8248113  T
Q  213 ataaatatta 222  Q
    ||||||||||    
T  8248114 ataaatatta 8248123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 5998129 - 5998249
Alignment:
Q  18 atgtgttctgccctctttttcttt-aaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    |||| ||||||  ||||||||||| ||| || |||||||| |||||||||||  | ||||| |||||||||||  | |||| |||||||||||||  ||     
T  5998129 atgtcttctgcaatctttttcttttaacaatggttttatcccattgagttttcttagtaaggtttttaacgaggcaaattatcacacaaaaggattatgc 5998228  T
Q  117 actctttttccttcactagaa 137  Q
    | |||||||||||||||||||    
T  5998229 attctttttccttcactagaa 5998249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 22477289 - 22477226
Alignment:
Q  74 taagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcactagaa 137  Q
    |||| |||||||||||  ||||||  ||||||||||||||||||||||||||| ||||||||||    
T  22477289 taaggtttttaacgaggcagattatgacacaaaaggatgttgtactctttttctttcactagaa 22477226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 20125074 - 20125190
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||| ||| |||||||||  |||||||| |||||||| || || |||||  || |||| |||||||  ||  ||||||  |||||||||||||||||    
T  20125074 atgtgttatgcactctttttcccttaaccatggttttatcccactgggttttcctgataaggtttttaatcaggcagattataacacaaaaggatgttgt 20125173  T
Q  117 actctttttccttcact 133  Q
    |||||||||| ||||||    
T  20125174 actctttttctttcact 20125190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 29185333 - 29185452
Alignment:
Q  18 atgtgttctgccctcttttt-ctttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||| | || ||||  |||||||| ||||| |||||  ||||||| |||||||||||  | |||   || ||||||||| ||||    
T  29185333 atgtgttctgcactcttttttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgt 29185431  T
Q  117 actctttttccttcactagaa 137  Q
    |||||||||||||||||||||    
T  29185432 actctttttccttcactagaa 29185452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 7578385 - 7578445
Alignment:
Q  73 gtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcact 133  Q
    ||||| ||||||| |||| ||||||| |||||||| ||||| |||||||||||| ||||||    
T  7578385 gtaaggtttttaatgagacagattacgacacaaaaagatgtcgtactctttttcattcact 7578445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 136
Target Start/End: Original strand, 9506491 - 9506525
Alignment:
Q  102 acaaaaggatgttgtactctttttccttcactaga 136  Q
    ||||||||||||||||||||||| |||||||||||    
T  9506491 acaaaaggatgttgtactcttttaccttcactaga 9506525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 25830653 - 25830619
Alignment:
Q  103 caaaaggatgttgtactctttttccttcactagaa 137  Q
    ||||||||| |||||||||||||||||||||||||    
T  25830653 caaaaggatattgtactctttttccttcactagaa 25830619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 4e-46; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 3110860 - 3110622
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| ||||| |||||| ||||||| |||||||||||  ||||||  |||||||||||||||||    
T  3110860 atgtgttctgcactctttttcccttaaccatggttttatcccattgggtttttctggtaaggtttttaacgaggcagattataacacaaaaggatgttgt 3110761  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||||| |||       | |||||||||||| ||||||| ||||||||||| ||||| |  |||| | |||||| || ||||||||| |    
T  3110760 actctttttccttcactggaattttttcccattgggtttttc-ttagtaaggttttaatgaggcatatctgagatggacatccaagggggagtgttatga 3110662  T
Q  217 atattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| || ||||||| |||||| |||||||||||||||    
T  3110661 atattacaagtggatgtccatatagcaattgggttattgg 3110622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 2169003 - 2168764
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  |||||||||||||||||    
T  2169003 atgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgt 2168904  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||||| |||       | ||||||||||||  |||||| ||||||||||| |||||     ||| | |||||| || ||||||||| |    
T  2168903 actctttttccttcactggaattttttcccattgggtttttctctagtaaggttttaatgaggcatatccgatatggacatccaagggggagtgttatga 2168804  T
Q  217 atattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| || ||||||| |||||| |||||||||||||||    
T  2168803 atattacaagtggatgtccatatagcaattgggttattgg 2168764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 13990639 - 13990878
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  |||||||||||||||||    
T  13990639 atgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgt 13990738  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||||| |||       | | ||||||||||  |||||| ||||||||||| |||||    |||| | |||||| || ||||||||| |    
T  13990739 actctttttccttcactggaattttttcccactgggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatga 13990838  T
Q  217 atattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| || ||||||| |||||| |||||||||||||||    
T  13990839 atattacaagtggatgtccatatagcaattgggttattgg 13990878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 23344183 - 23344422
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  |||||||||||||||||    
T  23344183 atgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgt 23344282  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||||| |||       | | ||||||||||  |||||| ||||||||||| |||||    |||| | |||||| || ||||||||| |    
T  23344283 actctttttccttcactggaattttttcccactgggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatga 23344382  T
Q  217 atattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| || ||||||| |||||| |||||||||||||||    
T  23344383 atattacaagtggatgtccatatagcaattgggttattgg 23344422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 13981008 - 13980765
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||| ||| |||||||||  |||||||| ||||| || ||||| |||||| ||||||| |||||||||||  ||||||  | |||||||||||||||    
T  13981008 atgtgttatgcactctttttcccttaaccatggttttttcccattgggtttttctggtaaggtttttaacgaggcagattataatacaaaaggatgttgt 13980909  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||| | |||       | | | |||||||| ||||||| ||||||||||| |||||  |||||| | |||||| | |||||||||| |    
T  13980908 actctttttccttcaatggaattttttcccactaggtttttctttagtaaggttttaatgaggcatatcctcgatggacatccaaggaagagtgttatga 13980809  T
Q  217 atattataaatggatgttcatatatcaattgggttattgggtca 260  Q
    ||||||||| |||||||  |||||  ||||||||||||||||||    
T  13980808 atattataagtggatgtctatataggaattgggttattgggtca 13980765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 40800990 - 40800751
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||| ||| |||||||||  |||||||| |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  |||||||||||||||||    
T  40800990 atgtgttatgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgt 40800891  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||||| |||       | | ||||||||||  |||||| ||||||||||| |||||    |||| | |||||| || ||||||||| |    
T  40800890 actctttttccttcactggaattttttcccactgggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatga 40800791  T
Q  217 atattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| || ||||||| |||||| |||||||||||||||    
T  40800790 atattacaagtggatgtccatatagcaattgggttattgg 40800751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 9724976 - 9724736
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| ||||  |||||  ||||||| |||||||||||  ||||||  |||||||||||||||||    
T  9724976 atgtgttctgcactctttttcccttaaccatggttttatcccatttggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgt 9724877  T
Q  117 actctttttccttcactagaa-nnnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttata 215  Q
    |||||||||||||||||||||        || | |||||||||  |||||| ||||||||||| |||||    |||| | |||||| || |||||||||     
T  9724876 actctttttccttcactagaattttttcccactggggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatg 9724777  T
Q  216 aatattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||||  | ||||||| |||||| |||||||||||||||    
T  9724776 aatattactagtggatgtccatatagcaattgggttattgg 9724736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 49487079 - 49486870
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattacca--cacaaaagg-atgt 113  Q
    ||||||||||| |||||||||  |||||||| ||||| || ||||| |||||  ||||||| |||||||||||  |||||| ||  ||||||||| || |    
T  49487079 atgtgttctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaaaagggatat 49486980  T
Q  114 tgtactctttttccttcactagaa-nnnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgtt 212  Q
    ||||||||||||||||||||||||        | ||| ||||||||  |||||| ||||||||||| |||||  || ||| | |||||| || |||||||    
T  49486979 tgtactctttttccttcactagaatttttcttctattaggtttttctctagtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgtt 49486880  T
Q  213 ataaatatta 222  Q
    ||||||||||    
T  49486879 ataaatatta 49486870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 17032945 - 17033049
Alignment:
Q  33 tttttctttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcac 132  Q
    |||||| |||||||| |||||||| ||||  |||||  ||||||| |||||||||||   |||||  ||||||| |||||||||||||||||||||||||    
T  17032945 tttttccttaaccatggttttatcccattaggttttcttggtaaggtttttaacgaggcggattatgacacaaagggatgttgtactctttttccttcac 17033044  T
Q  133 tagaa 137  Q
    |||||    
T  17033045 tagaa 17033049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 21883228 - 21883437
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattacca--cacaaaagg-atgt 113  Q
    ||||||||||| |||||||||  |||||||| ||||| || ||||| |||||  ||||||| |||||||||||  |||||| ||  ||||||||| || |    
T  21883228 atgtgttctgcactctttttcccttaaccatggttttgtcccattgggttttcttggtaaggtttttaacgaggcagattatcatacacaaaagggatat 21883327  T
Q  114 tgtactctttttccttcactagaa-nnnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgtt 212  Q
    ||||||||||||||||||||||||        | ||| ||||||||  || ||| ||||||||||| |||||  || ||| | |||||| || |||||||    
T  21883328 tgtactctttttccttcactagaatttttctcctattaggtttttctctaataaggttttaatgaggcatatcctcaatggacatccaagggggagtgtt 21883427  T
Q  213 ataaatatta 222  Q
    ||||||||||    
T  21883428 ataaatatta 21883437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 15752850 - 15752610
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||| ||| |||||||||  |||| ||| ||||| || ||||| |||||  ||||||| |||||||||||  |||||| || ||| ||| || ||||    
T  15752850 atgtgttatgcactctttttcccttaatcatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaag-atattgt 15752752  T
Q  117 actctttttccttcactagaa-nnnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttata 215  Q
    |||||||||||||||||||||        | ||| ||||||||  |||||| ||||||||||| ||||| ||| ||| | |||||| || || |||||||    
T  15752751 actctttttccttcactagaatttttctcctattaggtttttctctagtaaggttttaatgaggcatatcttcaatggacatccaagggggaatgttata 15752652  T
Q  216 aatattataaatggatgttcatatatcaattgggttattggg 257  Q
    |||||||  | ||||||| || ||| ||| || |||||||||    
T  15752651 aatattaatagtggatgtccaaatagcaaatgtgttattggg 15752610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 79 - 214
Target Start/End: Complemental strand, 15636581 - 15636446
Alignment:
Q  79 tttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgag 178  Q
    ||||||| |||  ||||||  ||||||||| ||||||||||||||||||||||||||||       | ||||||||||||  |||||| |||||||||||    
T  15636581 tttttaatgaggcagattatgacacaaaagtatgttgtactctttttccttcactagaatttttccccattgggtttttctctagtaaggttttaatgag 15636482  T
Q  179 tcatattttcgatgaatatccaatggagagtgttat 214  Q
     |||||  | || ||| |||||| || |||||||||    
T  15636481 acatatccttgacgaacatccaagggggagtgttat 15636446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 44122334 - 44122262
Alignment:
Q  64 gtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcactaga 136  Q
    |||||| || |||| ||||||| |||  ||||||  |||||||||||||||||||||||||||||||||||||    
T  44122334 gtttttctgataaggtttttaatgaggcagattatgacacaaaaggatgttgtactctttttccttcactaga 44122262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 12990783 - 12990854
Alignment:
Q  65 tttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcactaga 136  Q
    ||||| ||||||| ||||||| |||   |||||  |||||||||||||||||||||||||||||||||||||    
T  12990783 tttttctggtaaggtttttaatgaggcggattatgacacaaaaggatgttgtactctttttccttcactaga 12990854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 256
Target Start/End: Original strand, 20454561 - 20454664
Alignment:
Q  152 gtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataaatattataaatggatgttcatatatcaattgggtt 251  Q
    |||||||  ||||||||||||||| || |||||  | |||| | ||||| ||  |||||||| ||||||||||| ||||||| |||||| ||||||||||    
T  20454561 gtttttctctagtaaagttttaattagccatatccttgatggacatcca-tgatgagtgttacaaatattataagtggatgtccatatagcaattgggtt 20454659  T
Q  252 attgg 256  Q
    |||||    
T  20454660 attgg 20454664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 129
Target Start/End: Original strand, 27547029 - 27547125
Alignment:
Q  33 tttttctttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttcctt 129  Q
    |||||| |||||||| ||||||||  |||  |||||| ||||| | |||||||| ||  ||||||  |||||||| |||||||||||||||||||||    
T  27547029 tttttcattaaccatggttttatcctattaggtttttctggtatggtttttaacaaggcagattatgacacaaaaagatgttgtactctttttcctt 27547125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 26831006 - 26831097
Alignment:
Q  40 ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttca 131  Q
    |||||||||||||||||||||| | ||||| | |||| |||||||||||   | |||| ||||||||| |||  ||||||||||||| ||||    
T  26831006 ttaaccatagttttatctcattaaatttttttagtaaaatttttaacgaaggatattatcacacaaaaagattatgtactctttttctttca 26831097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 7462438 - 7462502
Alignment:
Q  40 ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacaca 104  Q
    ||||||||  ||||||||||| ||||||||||| |||| |||||||||||| | |||| ||||||    
T  7462438 ttaaccatgattttatctcatcgagtttttatgataaggtttttaacgagacaaattatcacaca 7462502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 13992148 - 13992097
Alignment:
Q  209 tgttataaatattataaatggatgttcatatatcaattgggttattgggtca 260  Q
    |||||| |||||||||| |||||||  ||||| |||||||||||||||||||    
T  13992148 tgttatgaatattataagtggatgtctatatagcaattgggttattgggtca 13992097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 10941992 - 10941910
Alignment:
Q  51 tttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcact 133  Q
    ||||| |||||| ||||| |||| ||| |||| | ||||  ||||||  |||||||| |||||||||| ||||||||||||||    
T  10941992 tttatttcattgggttttcatggcaaggttttaagcgaggcagattatgacacaaaatgatgttgtaccctttttccttcact 10941910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 147 - 257
Target Start/End: Original strand, 29225225 - 29225335
Alignment:
Q  147 attgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataaatattataaatggatgttcatatatcaatt 246  Q
    |||| |||||||  || ||| ||||||||||| ||||| ||||||| | ||||||  |||||| |||| |||||||| | || |||| |||||| ||| |    
T  29225225 attgagtttttctctaataaggttttaatgaggcatatcttcgatggacatccaagagagagtattatgaatattatgagtgaatgtccatataacaaat 29225324  T
Q  247 gggttattggg 257  Q
    |||||| ||||    
T  29225325 gggttaatggg 29225335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 293
Target Start/End: Original strand, 52555564 - 52555708
Alignment:
Q  152 gtttttcattagtaaag-ttttaatgagtcatattttcgatgaatatccaatggagagtgttataaatattataaatggatgttcatatatcaattgggt 250  Q
    |||||||  |||||||| |||||| ||| ||||| || || | | |||||||| ||||||||||||| || |||| ||||||| ||| || |||||| ||    
T  52555564 gtttttctctagtaaaggttttaacgagacatatctttgacggacatccaatgaagagtgttataaacatcataagtggatgtccatttaacaattgagt 52555663  T
Q  251 tattgggtca--ctattaactcatgcatacaattatgcttgtttc 293  Q
    | | ||||||  ||||||  |||||||||| ||| || |||||||    
T  52555664 tgtggggtcatgctattagttcatgcatactattgtgtttgtttc 52555708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 83; Significance: 5e-39; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 346023 - 345784
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  |||||||||||||||||    
T  346023 atgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgt 345924  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||||| |||       | | ||||||||||  |||||| ||||||||||| |||||    |||| | |||||| || ||||||||| |    
T  345923 actctttttccttcactggaattttttcccactgggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatga 345824  T
Q  217 atattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| || ||||||| |||||| |||||||||||||||    
T  345823 atattacaagtggatgtccatatagcaattgggttattgg 345784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 345754 - 345696
Alignment:
Q  305 gtgcttactcagcaagtcattgtttttctctataaatatagttc-catgtaacctaatt 362  Q
    ||||||||||  ||||||||||| |||||||||||||| || || ||||||||||||||    
T  345754 gtgcttactccccaagtcattgtatttctctataaatagagctcacatgtaacctaatt 345696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 5e-39; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 636089 - 636328
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  |||||||||||||||||    
T  636089 atgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgt 636188  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||||| |||       | | ||||||||||  |||||| ||||||||||| |||||    |||| | |||||| || ||||||||| |    
T  636189 actctttttccttcactggaattttttcccactgggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatga 636288  T
Q  217 atattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| || ||||||| |||||| |||||||||||||||    
T  636289 atattacaagtggatgtccatataacaattgggttattgg 636328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 22430155 - 22430394
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  |||||||||||||||||    
T  22430155 atgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgt 22430254  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||||| |||       | | ||||||||||  |||||| ||||||||||| |||||    |||| | |||||| || ||||||||| |    
T  22430255 actctttttccttcactggaattttttcccactgggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatga 22430354  T
Q  217 atattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| || ||||||| |||||| |||||||||||||||    
T  22430355 atattacaagtggatgtccatatagcaattgggttattgg 22430394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 22435749 - 22435988
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  |||||||||||||||||    
T  22435749 atgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgt 22435848  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||||| |||       | | ||||||||||  |||||| ||||||||||| |||||    |||| | |||||| || ||||||||| |    
T  22435849 actctttttccttcactggaattttttcccactgggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatga 22435948  T
Q  217 atattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| || ||||||| |||||| |||||||||||||||    
T  22435949 atattacaagtggatgtccatatagcaattgggttattgg 22435988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 7910315 - 7910076
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| || ||||||  |||||||| |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  |||||||||||||||||    
T  7910315 atgtgttctgcactatttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgt 7910216  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||||| |||       | | ||||||||||  |||||| ||||||||||| |||||    |||| | |||||| || ||||||||| |    
T  7910215 actctttttccttcactggaattttttcccactgggtttttctctagtaaggttttaatgagacatatccgagatggacatccaagggggagtgttatga 7910116  T
Q  217 atattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| || ||||||| |||||| |||||||||||||||    
T  7910115 atattacaagtggatgtccatataacaattgggttattgg 7910076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 14898590 - 14898829
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||| | |||||||||  |||||||| |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  |||||||||||||||||    
T  14898590 atgtgttctacactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgt 14898689  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||||| |||       | | ||||||||||  |||||| ||||||||||| ||||||   |||| | |||||| || ||||||||| |    
T  14898690 actctttttccttcactggaattttttcccactgggtttttctctagtaaggttttaatgaggcatattcgagatggacatccaagggggagtgttatga 14898789  T
Q  217 atattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| |  ||||||| |||||| |||||||||||||||    
T  14898790 atattacaggtggatgtccatatagcaattgggttattgg 14898829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 43776799 - 43777037
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| ||||| |||||  ||||||  |||||||||||  ||||||  |||||||||||| ||||    
T  43776799 atgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaagtttttaacgaggcagattataacacaaaaggatattgt 43776898  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||||| |||       | | ||||||||||  |||||| ||||||||||| |||||    |||| | |||||| || ||||||||| |    
T  43776899 actctttttccttcactggaatttttccc-actgggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatga 43776997  T
Q  217 atattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| || ||||||| |||||| |||||||||||||||    
T  43776998 atattacaagtggatgtccatatagcaattgggttattgg 43777037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 21289875 - 21289782
Alignment:
Q  40 ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcact 133  Q
    |||||||| |||||||| || ||||||||  ||||||| ||||||| ||| |||||||  ||||||||||||||||||||||||||||||||||    
T  21289875 ttaaccatggttttatcccactgagttttcctggtaaggtttttaatgaggtagattatgacacaaaaggatgttgtactctttttccttcact 21289782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 19437891 - 19437683
Alignment:
Q  18 atgtgttctgccctcttttt-ctttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattacc--acacaaaa-ggatgt 113  Q
    ||||||||||| |||||||| | |||||||| ||||| || ||||| |||||  ||||||| |||||||||||  |||||| |  |||||||| |||| |    
T  19437891 atgtgttctgcactctttttgccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaaaagggatat 19437792  T
Q  114 tgtactctttttccttcactagaa-nnnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgtt 212  Q
    ||||||| ||||||||||||||||        | ||| ||||||||  |||||| ||||||||||| ||||| ||| ||| | |||||| || |||||||    
T  19437791 tgtactc-ttttccttcactagaatttttctcctattaggtttttctctagtaaggttttaatgaggcatatcttcaatggacatccaagggggagtgtt 19437693  T
Q  213 ataaatatta 222  Q
    ||||||||||    
T  19437692 ataaatatta 19437683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 25231790 - 25231996
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||| ||| |||||||||  |||||||| |||||||| || |   ||||  ||||||| ||||||| |||  |||| |  |||||||||||||||||    
T  25231790 atgtgttttgcactctttttcccttaaccatggttttatcccactagattttcctggtaaggtttttaatgaggaagatcatgacacaaaaggatgttgt 25231889  T
Q  117 actctttttccttcactagaannnnnnnc-aattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttata 215  Q
    |||| ||||||||||||||||       |  || |||||||||  |||||| ||||||||||| ||||| || |||| |||||||| || || ||||||     
T  25231890 actcattttccttcactagaatttttttctcatcgggtttttctctagtaaggttttaatgaggcatatctttgatggatatccaagggggaatgttatg 25231989  T
Q  216 aatatta 222  Q
    |||||||    
T  25231990 aatatta 25231996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 34573995 - 34573899
Alignment:
Q  40 ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcactagaa 137  Q
    ||||||||||||||||||||||| |||||| |||| || |||||||  || | ||||| |||| || |||||||||||| |||||||||||| |||||    
T  34573995 ttaaccatagttttatctcattgggtttttctggt-aggtttttaataaggttgattatcacataataggatgttgtaccctttttccttcaatagaa 34573899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 43287744 - 43287625
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| ||||| || |||||||||||  ||||||| |||||||||||  |||||| || ||| || ||| |||     
T  43287744 atgtgttctgcactctttttcccttaaccatggttttgtcccattgagttttcctggtaaggtttttaacgaggcagattatcatacacaa-gatattgc 43287646  T
Q  117 actctttttccttcactagaa 137  Q
    ||||||||| |||||||||||    
T  43287645 actcttttttcttcactagaa 43287625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 11311857 - 11311975
Alignment:
Q  18 atgtgttctgccctctttttctttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgta 117  Q
    |||||||||||  | |||| | |||||||| |||||||| || || |||||  ||||||| ||||||| |||  ||||||  |||||||||| |||||||    
T  11311857 atgtgttctgcatttttttccattaaccatggttttatcccactg-gttttcctggtaaggtttttaatgaggcagattaagacacaaaaggttgttgta 11311955  T
Q  118 ctctttttccttcactagaa 137  Q
    || |||||||||||||||||    
T  11311956 ctttttttccttcactagaa 11311975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 16443680 - 16443565
Alignment:
Q  20 gtgttctgccctctttttctttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtac- 118  Q
    ||||| ||| ||| ||||| |||||||| |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  |||||||| |||||| |||     
T  16443680 gtgttatgcactccttttccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaatgatgttatact 16443581  T
Q  119 tctttttccttcacta 134  Q
    | ||||||||||||||    
T  16443580 tttttttccttcacta 16443565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 19089325 - 19089437
Alignment:
Q  72 ggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttt 171  Q
    |||||| ||| |||||||  | ||||| |||||||||||||||||||||||||| |||||||||||       | || |||||||||  |||||| ||||    
T  19089325 ggtaaggtttataacgaggcaaattacgacacaaaaggatgttgtactcttttttcttcactagaatttttttccatcgggtttttctctagtaaggttt 19089424  T
Q  172 taatgagtcatat 184  Q
    ||||||| |||||    
T  19089425 taatgaggcatat 19089437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 225
Target Start/End: Complemental strand, 5836370 - 5836221
Alignment:
Q  79 tttttaacgagatagattaccacacaaaag---gatgttgtactctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaat 175  Q
    |||||||||||| | |||| |||||||||    ||| |||||||||||||||||||||| ||       | |||| |||||||  |||||| ||||||||    
T  5836370 tttttaacgagacaaattatcacacaaaaaaaagatattgtactctttttccttcactaaaattttttcctattgagtttttctctagtaaggttttaat 5836271  T
Q  176 gagtcatattttcgatgaatatccaatggagagtgttataaatattataa 225  Q
    ||| |||||  |||||| | |||||| || ||||||||| ||||||||||    
T  5836270 gaggcatatcctcgatggacatccaagggggagtgttatgaatattataa 5836221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 7385153 - 7385087
Alignment:
Q  71 tggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcactagaa 137  Q
    ||||||| ||||||| |||  ||||||  |||||||||| |||||||||||||||||||||||||||    
T  7385153 tggtaaggtttttaatgaggcagattaagacacaaaaggttgttgtactctttttccttcactagaa 7385087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 19912070 - 19912190
Alignment:
Q  18 atgtgttctgccctcttttt--ctttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttg 115  Q
    ||||||||||| ||||||||  | |||||||| |||||||  ||||| |||||  |||||||||||| || |||    ||||  ||||||||||||||||    
T  19912070 atgtgttctgcactcttttttcccttaaccatggttttattccattgggttttcctggtaagatttt-aatgaggctcattatgacacaaaaggatgttg 19912168  T
Q  116 tactctttttccttcactagaa 137  Q
    |||||||||||| |||||||||    
T  19912169 tactctttttccatcactagaa 19912190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 17319844 - 17319748
Alignment:
Q  40 ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcactagaa 137  Q
    ||||||||||||||||| ||||  |||||  || |||| |||||||||||  ||||||  ||||||| ||||| |||||| |||||||||||||||||    
T  17319844 ttaaccatagttttatcccattatgttttcctgataaggtttttaacgaggcagattataacacaaa-ggatgatgtactatttttccttcactagaa 17319748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 40 - 257
Target Start/End: Complemental strand, 24053616 - 24053399
Alignment:
Q  40 ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcactagaann 139  Q
    ||||||||  |||| || ||||| |||||  || |||| |||||||||||  |||||| || ||| ||| || |||||||||||||||||||||||||      
T  24053616 ttaaccatgattttgtcccattgggttttcctgataaggtttttaacgaggcagattatcatacacaag-atattgtactctttttccttcactagaatt 24053518  T
Q  140 nnnnnca-attgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataaatattataaatggatgttcata 238  Q
         |  ||| ||||||||  |||||| ||||||||||| ||||| ||| ||| | ||| || || |||||||||||||||||  | ||||||| || |    
T  24053517 tttctcttattaggtttttctctagtaaggttttaatgaggcatatcttcaatggacatctaagggggagtgttataaatattaatagtggatgtccaaa 24053418  T
Q  239 tatcaattgggttattggg 257  Q
    || ||| || |||||||||    
T  24053417 tagcaaatgtgttattggg 24053399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 25445413 - 25445290
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattacca--cacaaaagg-atgt 113  Q
    ||||||| ||| |||||||||  |||||||| ||||| |  ||||| |||||  ||||||  |||||||||||| |||||| ||  ||||||||| || |    
T  25445413 atgtgttgtgcactctttttcccttaaccatggttttgttccattgggttttcctggtaaagtttttaacgagacagattatcatacacaaaagggatat 25445314  T
Q  114 tgtactctttttccttcactagaa 137  Q
    ||||||||||||||||||||||||    
T  25445313 tgtactctttttccttcactagaa 25445290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 1525628 - 1525688
Alignment:
Q  196 atccaatggagagtgttataaatattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| || ||||||||| |||||||||| ||||||| ||||||  ||||||||||||||    
T  1525628 atccaagggggagtgttatgaatattataagtggatgtccatatagaaattgggttattgg 1525688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 7917580 - 7917531
Alignment:
Q  207 agtgttataaatattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||||| ||||||| || ||||||| |||||| |||||||||||||||    
T  7917580 agtgttatgaatattacaagtggatgtccatataacaattgggttattgg 7917531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 14893223 - 14893272
Alignment:
Q  207 agtgttataaatattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||||| ||||||| || ||||||| |||||| |||||||||||||||    
T  14893223 agtgttatgaatattacaagtggatgtccatatagcaattgggttattgg 14893272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 5e-39; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 15716431 - 15716670
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  |||||||||||||||||    
T  15716431 atgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgt 15716530  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||||| |||       | | || |||||||  |||||| ||||||||||| |||||    |||||| |||||| || ||||||||| |    
T  15716531 actctttttccttcactggaattttttcccactgagtttttctctagtaaggttttaatgaggcatatccgagatgaacatccaagggggagtgttatga 15716630  T
Q  217 atattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| || ||||||| |||||| |||||||||||||||    
T  15716631 atattacaagtggatgtccatatagcaattgggttattgg 15716670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 40 - 256
Target Start/End: Complemental strand, 27179299 - 27179083
Alignment:
Q  40 ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcactagaann 139  Q
    |||||||| |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  |||||||||||||||||||||||||||||||||| |||      
T  27179299 ttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgtactctttttccttcactggaatt 27179200  T
Q  140 nnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataaatattataaatggatgttcatat 239  Q
         | | ||||||||||  |||||| ||||||||||| |||||    |||| | |||||| || ||||||||| ||||||| || ||||||| |||||    
T  27179199 ttttcccactgggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaatattacaagtggatgtccatat 27179100  T
Q  240 atcaattgggttattgg 256  Q
    | |||||||||||||||    
T  27179099 aacaattgggttattgg 27179083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 33493288 - 33493050
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| ||||| ||||   ||||||| |||||||||||  ||||||  |||||||||||||||||    
T  33493288 atgtgttctgcactctttttcccttaaccatggttttatcccattgggtttcc-tggtaaggtttttaacgaggcagattataacacaaaaggatgttgt 33493190  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||||| |||       | | ||||||||||  |||||| ||||||||||| |||||    |||| | |||||| || ||||||||| |    
T  33493189 actctttttccttcactggaatttttttccactgggtttttctctagtaaggttttaatgaggcatatccaagatggacatccaagggggagtgttatga 33493090  T
Q  217 atattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| || ||||||| |||||| |||||| ||| ||||    
T  33493089 atattacaagtggatgtccatatagcaattgagttgttgg 33493050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 11442042 - 11441842
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  ||||||||  ||||||| || || |||||| ||||||| ||||||| |||  ||||||  |||||||||||||||||    
T  11442042 atgtgttctgcactctttttcccttaaccatgattttatc-cactgggtttttctggtaaggtttttaatgaggcagattataacacaaaaggatgttgt 11441944  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||| |||||       | |||| |||||||  |||||| ||||||||||| ||||| || |||| | |||||| |||||||||||| |    
T  11441943 actctttttccttcattagaatttttttccattgagtttttctatagtaaggttttaatgaggcatatctt-gatggacatccaagggagagtgttatga 11441845  T
Q  217 ata 219  Q
    |||    
T  11441844 ata 11441842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 40274784 - 40274666
Alignment:
Q  20 gtgttctgccctcttttt-ctttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtac 118  Q
    ||||||||| |||||||| | |||||||| |||||||| ||||| |||||  || |||| ||||||||||   ||||||  |||||||||||||||||||    
T  40274784 gtgttctgcactcttttttccttaaccatggttttatcccattgggttttcctgataaggtttttaacgaagcagattatgacacaaaaggatgttgtac 40274685  T
Q  119 tctttttccttcactagaa 137  Q
    |||||||||||||||||||    
T  40274684 tctttttccttcactagaa 40274666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 33 - 222
Target Start/End: Original strand, 29547563 - 29547753
Alignment:
Q  33 tttttctttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcac 132  Q
    |||||| |||||||| |||||||| || || |||||  || |||| ||||||| |||  ||||||  |||||||||||||||||||||||||||||||||    
T  29547563 tttttccttaaccatggttttatcccactgtgttttcctgataaggtttttaatgaggcagattatgacacaaaaggatgttgtactctttttccttcac 29547662  T
Q  133 tag-aannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataaatatta 222  Q
    ||| ||       | || |||||||||  |||||| ||||||||||| |||||  |||||| | |||||| || ||||||||| |||||||    
T  29547663 tagaaatttttttccatcgggtttttccatagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttatgaatatta 29547753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 18535334 - 18535125
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattacca--cacaaaagg-atgt 113  Q
    ||||||||||| |||||||||  |||||||| ||||| || |||||||||||  ||||||| |||||||||||  |||||| ||  ||||||||| || |    
T  18535334 atgtgttctgcactctttttcccttaaccatggttttgtcccattgagttttcctggtaaggtttttaacgaggcagattatcatacacaaaagggatat 18535235  T
Q  114 tgtactctttttccttcactagaa-nnnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgtt 212  Q
    ||||||||||||||||||||||||        | ||| ||||||||   ||||| ||||||||||| |||||  || ||| | |||||| || |||||||    
T  18535234 tgtactctttttccttcactagaatttttctcctattaggtttttctccagtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgtt 18535135  T
Q  213 ataaatatta 222  Q
    ||||||||||    
T  18535134 ataaatatta 18535125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 26028494 - 26028615
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  ||||| || |||||||| || ||||||||| ||||||| |||||||||||  ||||||  |||||||||| ||||||    
T  26028494 atgtgttctgcactctttttcccttaactatggttttatcccactgagtttttctggtaaggtttttaacgaggcagattaagacacaaaaggttgttgt 26028593  T
Q  117 actc-tttttccttcactagaa 137  Q
    |||| ||||||||| |||||||    
T  26028594 actcttttttcctttactagaa 26028615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 31093302 - 31093093
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattacca--cacaaaagg-atgt 113  Q
    ||||||||||| |||||||||  |||||||| ||||| || ||||| |||||  ||||||| |||||||||||  |||||| ||  ||||||||| || |    
T  31093302 atgtgttctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaaaagggatat 31093203  T
Q  114 tgtactctttttccttcactagaa-nnnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgtt 212  Q
    ||||||||||||||||||||||||        | ||| ||||||||  |||||| ||||||||||| |||||  || ||| | |||||| || |||||||    
T  31093202 tgtactctttttccttcactagaatttttctcctattaggtttttctctagtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgtt 31093103  T
Q  213 ataaatatta 222  Q
    ||||||||||    
T  31093102 ataaatatta 31093093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 37357084 - 37356844
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    |||| |||||| |||||||||  |||||||| ||||| || ||||| |||||  ||||||| |||||||||||  |||||| || ||| ||| || ||||    
T  37357084 atgtcttctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaag-atattgt 37356986  T
Q  117 actctttttccttcactagaa-nnnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttata 215  Q
    |||||||||||||||||| ||        | ||| ||||||||  |||||| ||||||||||| ||||| ||| ||| | |||||| || ||||||||||    
T  37356985 actctttttccttcactaaaatttttctcctattaggtttttctctagtaaggttttaatgaggcatatcttcaatggacatccaagggggagtgttata 37356886  T
Q  216 aatattataaatggatgttcatatatcaattgggttattggg 257  Q
    |||||||  | ||||||| || ||| ||| || |||||||||    
T  37356885 aatattaatagtggatgtccaaatagcaaatgtgttattggg 37356844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 17721524 - 17721768
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    |||| |||||| |||||||||| |||| ||| |||||||| |||||  ||||  ||||||  ||||||| ||   ||||||  |||||||||||||||||    
T  17721524 atgttttctgcactctttttctcttaatcatggttttatcccattggtttttcctggtaatgtttttaatgaagcagattatgacacaaaaggatgttgt 17721623  T
Q  117 actctttttccttcactagaa-nnnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttata 215  Q
    |||||||||||||||||||||        |  |||| | ||||  |||||| ||||||||||| | |||  |||||| | || ||| || |||||||||     
T  17721624 actctttttccttcactagaatttattttcctttggttatttctatagtaaggttttaatgaggcgtatcatcgatggacattcaagggggagtgttatg 17721723  T
Q  216 aatattataaatggatgttcatatatcaattgggttattgggtca 260  Q
    |||||||||| ||||||| ||| ||  |||| |||||||||||||    
T  17721724 aatattataagtggatgtccatgtaagaatttggttattgggtca 17721768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 28519082 - 28519200
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||| || ||||  |||||||| ||||| |||||  |||||||||||||||||||  | |||   || ||||||||| ||||    
T  28519082 atgtgttctgcactctttttctcttcaccaaggttttatcccattgggttttcctggtaagatttttaacgag-gaaattcaaactcaaaaggatattgt 28519180  T
Q  117 actctttttccttcactaga 136  Q
    ||||||||||||||||||||    
T  28519181 actctttttccttcactaga 28519200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 145719 - 145622
Alignment:
Q  40 ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcactagaa 137  Q
    |||||||| |||||||  || || |||||  || |||| ||||||| |||  ||||||  ||||||||||||||||||||||||||||||||||||||    
T  145719 ttaaccatggttttattccactgggttttcctgataaggtttttaatgaggcagattatgacacaaaaggatgttgtactctttttccttcactagaa 145622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 11659982 - 11660105
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattacca--cacaaaagg-atgt 113  Q
    ||||||||||| |||||||||  |||||||| ||||| || ||||| |||||  || |||| |||||||||||  |||||| ||  ||||||||| || |    
T  11659982 atgtgttctgcactctttttcccttaaccatggttttgtcccattgggttttcctgataaggtttttaacgaggcagattatcatacacaaaagggatat 11660081  T
Q  114 tgtactctttttccttcactagaa 137  Q
    ||||||||||||||||||||||||    
T  11660082 tgtactctttttccttcactagaa 11660105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 22576168 - 22576105
Alignment:
Q  74 taagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcactagaa 137  Q
    |||| ||||||| |||| ||||||  ||||||||||| ||||||||||||||||||||||||||    
T  22576168 taaggtttttaatgagacagattatgacacaaaaggacgttgtactctttttccttcactagaa 22576105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 16168570 - 16168772
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    |||| |||||| |||||||||  |||||||| |||||||| |||||||||||| ||||||  ||||||||||   | ||||  |||||||| ||||||||    
T  16168570 atgtattctgcactctttttcccttaaccatggttttatcccattgagtttttctggtaatgtttttaacgatgcaaattataacacaaaatgatgttgt 16168669  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    | | |||||   ||| |||||       | || ||||||||  ||||||||||||||||||| |||||  | |||||| |||||| |  ||||||||| |    
T  16168670 aatttttttttctcaatagaatttatttccatcgggtttttttttagtaaagttttaatgaggcatatccttgatgaacatccaaggaggagtgttatga 16168769  T
Q  217 ata 219  Q
    |||    
T  16168770 ata 16168772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 15552671 - 15552787
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||| ||| |||||||||  |||||||| |||||||| || ||  ||||  ||||||| |||||||  ||  | ||||  |||||||||||||||||    
T  15552671 atgtgttatgcactctttttcccttaaccatggttttatcccactggattttcctggtaaggtttttaatcaggcatattatgacacaaaaggatgttgt 15552770  T
Q  117 actctttttccttcact 133  Q
    |||||||||||||||||    
T  15552771 actctttttccttcact 15552787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 38990908 - 38991026
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  || ||||  |||||||| ||||| |||||  ||||||| |||||||||||  | |||   || ||||||||| ||||    
T  38990908 atgtgttctgcgctctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgt 38991006  T
Q  117 actctttttccttcactaga 136  Q
    ||||||||||||||||||||    
T  38991007 actctttttccttcactaga 38991026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 28519226 - 28519288
Alignment:
Q  160 ttagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataaatatta 222  Q
    ||||||| ||||||||||| |||||  |||||| | |||||| || |||||||||||||||||    
T  28519226 ttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatatta 28519288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 27163532 - 27163475
Alignment:
Q  33 tttttctttaaccatagttttatctcattgagtttttatggtaagatttttaacgaga 90  Q
    |||||| |||||||| ||||| ||||||||||| ||  ||||||||||||||| ||||    
T  27163532 tttttccttaaccatggttttctctcattgagtattactggtaagatttttaaggaga 27163475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 40 - 259
Target Start/End: Original strand, 39273 - 39491
Alignment:
Q  40 ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcactagaann 139  Q
    |||||||| |||||||| ||||| |||||  ||||||| ||||||||||   ||||||  |||||||||||||||||||||||||||||||||| |||      
T  39273 ttaaccatggttttatcccattgggttttcttggtaaggtttttaacgatgcagattataacacaaaaggatgttgtactctttttccttcactggaatt 39372  T
Q  140 nnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataaatattataaatggatgttcatat 239  Q
         | | ||||||||||  |||||| ||||||||||| |||||  |||||| | || ||| || ||||||||| |||||||||| ||||||| |||||    
T  39373 ttttcccactgggtttttctctagtaaggttttaatgaggcatatcctcgatggacat-caagggggagtgttatgaatattataagtggatgtccatat 39471  T
Q  240 atcaattgggttattgggtc 259  Q
    | ||||| ||||||||||||    
T  39472 aacaattaggttattgggtc 39491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 28367333 - 28367094
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  |||||||||||||||||    
T  28367333 atgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgt 28367234  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||||| |||       | | ||||||||||  |||||| ||||||||||| |||||    |||| | |||||| || ||||||||| |    
T  28367233 actctttttccttcactggaattttttcccactgggtttttctctagtaaggttttaatgaggcatatccgagatggacatccaagggggagtgttatga 28367134  T
Q  217 atattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| || |||||||  ||||| |||||| ||||||||    
T  28367133 atattacaagtggatgtcaatatagcaattgagttattgg 28367094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 30957949 - 30957710
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||| | |||||||||  |||||||| |||||||| ||||| |||||  ||||||| |||||||||||  ||||||  |||||||||||||||||    
T  30957949 atgtgttctacactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagattataacacaaaaggatgttgt 30957850  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    ||||||||||||||||| |||       | | ||||||||||  | |||| || |||||||| |||||    |||| | |||||| || ||||||||| |    
T  30957849 actctttttccttcactggaattttttcccactgggtttttctctcgtaaggtattaatgaggcatatccgagatggacatccaagggggagtgttatga 30957750  T
Q  217 atattataaatggatgttcatatatcaattgggttattgg 256  Q
    |||||| || ||||||| |||||| |||||||||||||||    
T  30957749 atattacaagtggatgtccatatagcaattgggttattgg 30957710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 19780369 - 19780247
Alignment:
Q  16 atatgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgtt 114  Q
    ||||||||||||| |||||||||  |||||||| |||||||| |||||  ||||| ||||||| |||||||||||  ||||||  |||||||||||||||    
T  19780369 atatgtgttctgcactctttttcccttaaccatggttttatcccattggatttttctggtaaggtttttaacgaggcagattatgacacaaaaggatgtt 19780270  T
Q  115 gtactctttttccttcactagaa 137  Q
    ||| |||||||||||||||||||    
T  19780269 gtaatctttttccttcactagaa 19780247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 17945555 - 17945674
Alignment:
Q  18 atgtgttctgccctcttttt-ctttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||| | |||||| | |||||||| ||||| |||||| | ||||| |||||||||||| ||||||  |||||||||| ||||||    
T  17945555 atgtgttctgcactcttttttccttaaccgtggttttatcccattgggtttttcttgtaaggtttttaacgagacagattaagacacaaaaggttgttgt 17945654  T
Q  117 actctttttccttcactaga 136  Q
    ||||||||||||||||||||    
T  17945655 actctttttccttcactaga 17945674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 35264895 - 35264686
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacaca---aaaggatgt 113  Q
    ||||||||||| |||||||||  |||||||| ||||| || ||||| |||||  ||||||| |||||||||||  |||||| || |||   ||||||| |    
T  35264895 atgtgttctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaaaaaggatat 35264796  T
Q  114 tgtactctttttccttcactagaa-nnnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgtt 212  Q
    ||||||||||||||||||||||||        | ||| ||||||||  |||||| ||||||||||| |||||  || ||| | |||||| || |||||||    
T  35264795 tgtactctttttccttcactagaatttttcttccattaggtttttctctagtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgtt 35264696  T
Q  213 ataaatatta 222  Q
    ||||||||||    
T  35264695 ataaatatta 35264686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 21171541 - 21171333
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattacca--cacaaaagg-atgt 113  Q
    ||||||||||| |||||||||  |||||||| ||||| || ||||| |||||| ||||||| |||||||||||  |||||| ||  ||||||||| || |    
T  21171541 atgtgttctgcactctttttcccttaaccatggttttgtcccattgggtttttctggtaag-tttttaacgaggcagattatcatacacaaaagggatat 21171443  T
Q  114 tgtactctttttccttcactagaa-nnnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgtt 212  Q
    ||||||||||||||||||||||||        | ||| ||||||||  |||||| ||||||||||| |||||  || ||| | |||||| || |||||||    
T  21171442 tgtactctttttccttcactagaatttttctcctattaggtttttctctagtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgtt 21171343  T
Q  213 ataaatatta 222  Q
    ||||||||||    
T  21171342 ataaatatta 21171333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 18080306 - 18080192
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  |||||||| |||||||| || || |||||  ||||||  ||||||| |||  ||||||  |||||||||||||||||    
T  18080306 atgtgttctgcactctttttcccttaaccatggttttatcccactgggttttcctggtaaagtttttaatgaggcagattatgacacaaaaggatgttgt 18080207  T
Q  117 actctttttccttca 131  Q
    |||||||||||||||    
T  18080206 actctttttccttca 18080192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 23053733 - 23053525
Alignment:
Q  18 atgtgttctgccctcttttt-ctttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattacc--acacaaaa-ggatgt 113  Q
    ||||||||||| |||||||| | |||||||| ||||| || ||||| |||||  ||||||| |||||||||||  |||||| |  |||||||| |||| |    
T  23053733 atgtgttctgcactctttttgccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagattatcatacacaaaagggatat 23053634  T
Q  114 tgtactctttttccttcactagaa-nnnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgtt 212  Q
    ||||||| ||||||||||||||||        | ||| ||||||||  |||||| ||||||||||| ||||| ||| ||| | |||||| || |||||||    
T  23053633 tgtactc-ttttccttcactagaatttttctcctattaggtttttctctagtaaggttttaatgaggcatatcttcaatggacatccaagggggagtgtt 23053535  T
Q  213 ataaatatta 222  Q
    ||||||||||    
T  23053534 ataaatatta 23053525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 12026649 - 12026447
Alignment:
Q  18 atgtgttctgccctctttttctttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgta 117  Q
    ||||||||||| ||||||| | ||||||||  |||||||  ||||||||||  |  |||| |||||||||||  ||||||  |||||||| |||||||||    
T  12026649 atgtgttctgcactcttttcccttaaccatgattttatcctattgagttttcctaataaggtttttaacgaggcagattatgacacaaaatgatgttgta 12026550  T
Q  118 ctctttttccttcactagaa-nnnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataa 216  Q
    || |||||| ||||||  ||        | ||  ||||||||  |||||| ||||||||||  |||||  | |||||||||||||||||||||||||| |    
T  12026549 ctttttttctttcactgtaattttttttccatccggtttttctctagtaaggttttaatgaagcatatccttgatgaatatccaatggagagtgttatga 12026450  T
Q  217 ata 219  Q
    |||    
T  12026449 ata 12026447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 24213606 - 24213548
Alignment:
Q  79 tttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcactagaa 137  Q
    ||||||| ||| |||||||  |||||||||||| |||||||||||||||||||||||||    
T  24213606 tttttaatgaggtagattatgacacaaaaggattttgtactctttttccttcactagaa 24213548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 160 - 257
Target Start/End: Complemental strand, 25365602 - 25365505
Alignment:
Q  160 ttagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataaatattataaatggatgttcatatatcaattgggttattggg 257  Q
    ||||||| ||||||||||| |||||  |||||| | |||||| || |||||||||||||||||  | |||||||||| ||| ||| || |||||||||    
T  25365602 ttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatagtggatgttcaaatagcaaatgtgttattggg 25365505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 209 - 256
Target Start/End: Complemental strand, 1536715 - 1536668
Alignment:
Q  209 tgttataaatattataaatggatgttcatatatcaattgggttattgg 256  Q
    ||||||||||||||||| ||||||| |||||| |||||||||||||||    
T  1536715 tgttataaatattataagtggatgtccatatagcaattgggttattgg 1536668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 14664119 - 14664069
Alignment:
Q  205 agagtgttataaatattataaatggatgttcatatatcaattgggttattg 255  Q
    |||||||||| |||||||||| ||||||| |||||| ||||||||||||||    
T  14664119 agagtgttatgaatattataagtggatgtccatatagcaattgggttattg 14664069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 34648152 - 34648037
Alignment:
Q  147 attgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataaatattataa----atggatgttcatatatc 242  Q
    ||||||||||||  ||| || ||||||||||| |||||  | |||| | |||||| || ||| ||||| ||||||||||    |||||||| |||||| |    
T  34648152 attgggtttttctctagaaaggttttaatgaggcatatccttgatggacatccaagggggagagttatgaatattataagtggatggatgtccatatagc 34648053  T
Q  243 aattgggttattgggt 258  Q
    ||||||||||||||||    
T  34648052 aattgggttattgggt 34648037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 30963333 - 30963285
Alignment:
Q  208 gtgttataaatattataaatggatgttcatatatcaattgggttattgg 256  Q
    ||||||| |||||||||| ||||||| |||||| |||||||||||||||    
T  30963333 gtgttatgaatattataagtggatgtccatataacaattgggttattgg 30963285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 19699172 - 19699261
Alignment:
Q  40 ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttcctt 129  Q
    ||||||||  ||||||| || ||||||||  ||||||  ||||||| |||  ||||||  |||||||||| ||||||| |||||||||||    
T  19699172 ttaaccatgattttatcccactgagttttcctggtaaagtttttaatgaggcagattaagacacaaaaggttgttgtaatctttttcctt 19699261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 25365660 - 25365627
Alignment:
Q  103 caaaaggatgttgtactctttttccttcactaga 136  Q
    ||||||||| ||||||||||||||||||||||||    
T  25365660 caaaaggatattgtactctttttccttcactaga 25365627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 25365933 - 25365900
Alignment:
Q  103 caaaaggatgttgtactctttttccttcactaga 136  Q
    ||||||||| ||||||||||||||||||||||||    
T  25365933 caaaaggatattgtactctttttccttcactaga 25365900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 16673313 - 16673385
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgag 89  Q
    ||||||||||| |||||||||  |||||||| ||||| || ||||| |||||  ||||||| |||||||||||    
T  16673313 atgtgttctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgag 16673385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 7e-29; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 21 - 260
Target Start/End: Original strand, 6932849 - 6933090
Alignment:
Q  21 tgttctgccctctttttc-tttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagat-taccacacaaaaggatgttgtac 118  Q
    |||||||| ||||||||| |||||| |||||||||||||| ||||||||  ||||||| ||||||| ||| || || ||  |||||||| |||| |||||    
T  6932849 tgttctgcactctttttcctttaactatagttttatctcactgagttttcctggtaaggtttttaatgaggtatatatatgacacaaaatgatgatgtac 6932948  T
Q  119 tctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggag-agtgttataaa 217  Q
    |||||||| ||||||| ||         |||||||||||   |||||| ||||||||||| ||||| ||||| | | |||||| ||||  ||||||| ||    
T  6932949 tctttttcattcactataattttttctcattgggtttttatctagtaaggttttaatgaggcatatcttcgacggacatccaa-ggagctgtgttatgaa 6933047  T
Q  218 tattataaatggatgttcatatatcaattgggttattgggtca 260  Q
    |||||||| ||||||| |||||| |||||||||||||||||||    
T  6933048 tattataagtggatgtccatatagcaattgggttattgggtca 6933090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 71 - 256
Target Start/End: Original strand, 14855797 - 14855983
Alignment:
Q  71 tggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcact-agaannnnnnncaattgggtttttcattagtaaagt 169  Q
    ||||||| ||||||||||| |||||||  |||||||||||||||||||||||||||||||| | | |        | | ||||||||||  |||||| ||    
T  14855797 tggtaaggtttttaacgaggtagattataacacaaaaggatgttgtactctttttccttcattgaaatttttttcccactgggtttttctctagtaaggt 14855896  T
Q  170 tttaatgagtcatattttcgatgaatatccaatggagagtgttataaatattataaatggatgttcatatatcaattgggttattgg 256  Q
    ||||||||| |||||    |||| | |||||| || ||||||||| ||||||| || ||||||| |||||| |||||||||||||||    
T  14855897 tttaatgaggcatatccgagatggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattgg 14855983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 25397723 - 25397890
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||| | |||||||||  ||||||||  ||||||| || ||  ||||  ||||||| ||||||| |||  ||||||  |||||||| ||||||||    
T  25397723 atgtgttctacactctttttcccttaaccatgattttatcccactggattttcctggtaaggtttttaatgaggcagattatgacacaaaatgatgttgt 25397822  T
Q  117 actctttttccttcactagaannnnnnncaattgggtttttcattagtaaagttttaatgagtcatat 184  Q
    | ||||||||||||||||||        | ||||| ||||||| |||||| ||||||||||| |||||    
T  25397823 aatctttttccttcactagattttttttccattggatttttcactagtaaggttttaatgaggcatat 25397890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 17270487 - 17270422
Alignment:
Q  71 tggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcactaga 136  Q
    ||||||| ||||||||||   ||||||  ||||||||||||||| |||||||||||||||| ||||    
T  17270487 tggtaaggtttttaacgaagcagattatgacacaaaaggatgttttactctttttccttcattaga 17270422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 23427290 - 23427495
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  || ||||  |||||||| ||||| |||||  ||||||| |||||||||||  | |||   || ||||||||| ||||    
T  23427290 atgtgttctgcactctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgt 23427388  T
Q  117 actctttttccttcactagaannnnnnnca-attgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttata 215  Q
    ||||||||||||||||||||        |  |  |||||||   ||||||| ||||||||||| |||||  |||||| | |||||| || ||||||||||    
T  23427389 actctttttccttcactagattttttttcccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttata 23427488  T
Q  216 aatatta 222  Q
    |||||||    
T  23427489 aatatta 23427495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 111679 - 111888
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattacc--acacaaaa-ggatgt 113  Q
    ||||||||||| |||||||||  |||||||| ||||| || ||||| |||||| ||||||| |||||||||||  |||||| |  |||||||| |||| |    
T  111679 atgtgttctgcactctttttcccttaaccatggttttgtcccattgggtttttctggtaaggtttttaacgaggcagattatcatacacaaaagggatat 111778  T
Q  114 tgtactctttttccttcactagaa-nnnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgtt 212  Q
    ||||||||||||||||||||||||        | ||| ||||||||  |||||| ||||||||||| |||||  || ||| | |||||| || |||||||    
T  111779 tgtactctttttccttcactagaatttttctcctattaggtttttctctagtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgtt 111878  T
Q  213 ataaatatta 222  Q
    ||||||||||    
T  111879 ataaatatta 111888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 13830 - 14038
Alignment:
Q  18 atgtgttctgccctctttttctttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacac---aaaaggatgtt 114  Q
    ||||||||||| ||||||||| |||||||| ||||| || ||||| |||||   |||||| |||||||||||  |||||| |||||   ||| |||| ||    
T  13830 atgtgttctgcactctttttccttaaccatggttttgtcccattgggttttccgggtaaggtttttaacgaggcagattatcacacacaaaacggatatt 13929  T
Q  115 gtactctttttccttcactagaa-nnnnnnncaattgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgtta 213  Q
    |||||||||||||||||||||||        | ||| | ||||||  |||||| ||||||||||| |||||  || ||| | |||||| || ||||||||    
T  13930 gtactctttttccttcactagaatttttctcctattagatttttctctagtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgtta 14029  T
Q  214 taaatatta 222  Q
    |||||||||    
T  14030 taaatatta 14038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 30714571 - 30714326
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattacca--cacaaaagg-atgt 113  Q
    ||||||| ||| |||||||||  |||||||| ||||| || ||||| |||||| ||||||| |||||||||||  |||||| ||  ||||||||| || |    
T  30714571 atgtgttatgcactctttttcccttaaccatggttttgtcccattgggtttttctggtaaggtttttaacgaggcagattatcatacacaaaagggatat 30714472  T
Q  114 tgtactctttttccttcactagaa-nnnnnnncaattgggtttt-tcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgt 211  Q
    ||||||||||||||||||||||||        | ||| |||||| ||  |||||| ||||||||||| |||||  || ||| | |||||| || ||||||    
T  30714471 tgtactctttttccttcactagaatttttctcctattaggttttctctatagtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgt 30714372  T
Q  212 tataaatattataaatggatgttcatatatcaattgggttattggg 257  Q
    |||||||||||  | ||||||| || ||| |||||| |||| ||||    
T  30714371 tataaatattaatagtggatgtccaaatagcaattgtgttagtggg 30714326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 30722348 - 30722103
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattacca--cacaaaagg-atgt 113  Q
    ||||||| ||| |||||||||  |||||||| ||||| || ||||| |||||| ||||||| |||||||||||  |||||| ||  ||||||||| || |    
T  30722348 atgtgttatgcactctttttcccttaaccatggttttgtcccattgggtttttctggtaaggtttttaacgaggcagattatcatacacaaaagggatat 30722249  T
Q  114 tgtactctttttccttcactagaa-nnnnnnncaattgggtttt-tcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgt 211  Q
    ||||||||||||||||||||||||        | ||| |||||| ||  |||||| ||||||||||| |||||  || ||| | |||||| || ||||||    
T  30722248 tgtactctttttccttcactagaatttttctcctattaggttttctctatagtaaggttttaatgaggcatatcctcaatggacatccaagggggagtgt 30722149  T
Q  212 tataaatattataaatggatgttcatatatcaattgggttattggg 257  Q
    |||||||||||  | ||||||| || ||| |||||| |||| ||||    
T  30722148 tataaatattaatagtggatgtccaaatagcaattgtgttagtggg 30722103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 10738791 - 10738891
Alignment:
Q  33 tttttctttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcac 132  Q
    |||||| |||||||| |||||||| || || |||||   |||||||||||||| |||  ||||||  |||||||||| ||||||||||||||||||||||    
T  10738791 tttttccttaaccatggttttatcccactg-gttttcccggtaagatttttaatgaggcagattaaaacacaaaaggttgttgtactctttttccttcac 10738889  T
Q  133 ta 134  Q
    ||    
T  10738890 ta 10738891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 41048689 - 41048782
Alignment:
Q  40 ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcact 133  Q
    |||||||| |||||||| ||||| |||||  ||| ||| |||||||  ||  ||||||  ||||||||||||||||||||||||||||||||||    
T  41048689 ttaaccatggttttatcccattgggttttcctggaaaggtttttaataaggcagattataacacaaaaggatgttgtactctttttccttcact 41048782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 17909553 - 17909673
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| || ||||||  |||||| |  ||||||| ||||| ||||   ||||||| |||||||||||  ||||||  |||||||||| ||||||    
T  17909553 atgtgttctgcactatttttcccttaaccgtgattttatcccattgggtttccctggtaaggtttttaacgaggcagattaagacacaaaaggttgttgt 17909652  T
Q  117 actctttttccttcactagaa 137  Q
     ||||||||||||||||||||    
T  17909653 gctctttttccttcactagaa 17909673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 23429339 - 23429455
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||| | |||||||||  |||||||| | |||||| || || |||||  ||||||| ||||||| |||  ||||||  ||||||||| |||||||    
T  23429339 atgtgttctacactctttttcccttaaccatggatttatcccactgggttttcctggtaaggtttttaatgaggcagattatgacacaaaagaatgttgt 23429438  T
Q  117 actctttttccttcact 133  Q
    |||||||||||||||||    
T  23429439 actctttttccttcact 23429455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 12756382 - 12756275
Alignment:
Q  149 tgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataaatattataaatggatgttcatatatcaattgg 248  Q
    ||||||||||  |||||| ||||||||||| |||||    |||| | |||||| || ||||||||| ||||||| || ||||||| |||||| |||||||    
T  12756382 tgggtttttctctagtaaggttttaatgagacatatccgagatggacatccaagggggagtgttatgaatattacaagtggatgtccatataacaattgg 12756283  T
Q  249 gttattgg 256  Q
    ||||||||    
T  12756282 gttattgg 12756275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 37209518 - 37209638
Alignment:
Q  18 atgtgttctgccctctttttct--ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttg 115  Q
    ||||||||||| |||||||| |  || ||||  |||||||| ||||| |||||| ||||||| |||||||||||  | |||   || ||||||||| |||    
T  37209518 atgtgttctgcactctttttttccttcaccaaggttttatcccattgggtttttctggtaaggtttttaacgaggca-attcaaactcaaaaggatattg 37209616  T
Q  116 tactctttttccttcactagaa 137  Q
    ||||||||||||||||||||||    
T  37209617 tactctttttccttcactagaa 37209638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 33 - 134
Target Start/End: Complemental strand, 16846036 - 16845935
Alignment:
Q  33 tttttctttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcac 132  Q
    |||||||||||||||  ||||||||||||| |||||| ||| ||| ||||||| |||  ||||||   ||| |||  || ||||||||||||| ||||||    
T  16846036 tttttctttaaccatgattttatctcattgggtttttctggcaaggtttttaatgaggcagattatggcacgaaaacatattgtactcttttttcttcac 16845937  T
Q  133 ta 134  Q
    ||    
T  16845936 ta 16845935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 21247484 - 21247689
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  || ||||  |||||||| ||||| |||||  ||||||| |||||||||||  | |||   || ||||||||| ||||    
T  21247484 atgtgttctgcactctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgt 21247582  T
Q  117 actctttttccttcactagaannnnnnnca-attgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttata 215  Q
    ||||||||||||||||||||        |  |  |||||||   ||||||| ||||||||||| |||||  |||||| | |||||| || ||||||||||    
T  21247583 actctttttccttcactagattttttttcccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttata 21247682  T
Q  216 aatatta 222  Q
    |||||||    
T  21247683 aatatta 21247689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 27679975 - 27679770
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||||||| |||||||||  || ||||  |||||||| ||||| |||||  ||||||| |||||||||||  | |||   || ||||||||| ||||    
T  27679975 atgtgttctgcactctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca-attcaaactcaaaaggatattgt 27679877  T
Q  117 actctttttccttcactagaannnnnnnca-attgggtttttcattagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttata 215  Q
    ||||||||||||||||||||        |  |  |||||||   ||||||| ||||||||||| |||||  |||||| | |||||| || ||||||||||    
T  27679876 actctttttccttcactagattttttttcccacggggttttattttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttata 27679777  T
Q  216 aatatta 222  Q
    |||||||    
T  27679776 aatatta 27679770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 2534637 - 2534573
Alignment:
Q  33 tttttctttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagatta 97  Q
    |||||| ||||||||||||||||| | |||||||||  || |||||||||||| |||||| ||||    
T  2534637 tttttccttaaccatagttttatcccgttgagttttcctgataagatttttaatgagatatatta 2534573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 8509612 - 8509705
Alignment:
Q  40 ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgtactctttttccttcacta 134  Q
    |||||||| |||||||| |||||  ||||  ||||||| |||||||||||  | ||||  | || ||||||||||||||||||||||||| ||||    
T  8509612 ttaaccatggttttatcccattggattttcttggtaaggtttttaacgaggcaaattatgatac-aaaggatgttgtactctttttcctttacta 8509705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 37209663 - 37209725
Alignment:
Q  160 ttagtaaagttttaatgagtcatattttcgatgaatatccaatggagagtgttataaatatta 222  Q
    ||||||| ||||||||||| |||||  |||||| | |||||| || |||||||||||||||||    
T  37209663 ttagtaaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatatta 37209725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 11401 - 11521
Alignment:
Q  18 atgtgttctgccctctttttct-ttaaccatagttttatctcattgagtttttatggtaagatttttaacgagatagattaccacacaaaaggatgttgt 116  Q
    ||||||| ||| |||||||||  |||| ||| |||||||| || || |||||| ||||||| ||||||| |||  ||||||  | |||||||||| ||||    
T  11401 atgtgttatgcactctttttcccttaaacatggttttatcccactgggtttttctggtaaggtttttaatgaggcagattatgatacaaaaggatattgt 11500  T
Q  117 actctttttccttcactagaa 137  Q
    |||||||||||||||||||||    
T  11501 actctttttccttcactagaa 11521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 8694 - 8746
Alignment:
Q  208 gtgttataaatattataaatggatgttcatatatcaattgggttattgggtca 260  Q
    ||||||| |||||||||| |||||||  ||||| |||||||||||||||||||    
T  8694 gtgttatgaatattataagtggatgtctatatagcaattgggttattgggtca 8746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 35941 - 35896
Alignment:
Q  49 gttttatctcattgagtttttatggtaagatttttaacgagataga 94  Q
    |||||||||||||||| |||| | |||||||||||||| |||||||    
T  35941 gttttatctcattgagcttttttagtaagatttttaacaagataga 35896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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