View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4741-Insertion-5 (Length: 611)

Name: NF4741-Insertion-5
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4741-Insertion-5
NF4741-Insertion-5
[»] chr1 (29 HSPs)
chr1 (334-611)||(23472391-23472667)
chr1 (7-279)||(23472063-23472336)
chr1 (53-185)||(36794616-36794750)
chr1 (53-227)||(43105106-43105284)
chr1 (53-231)||(40118603-40118785)
chr1 (53-174)||(48390026-48390146)
chr1 (53-158)||(21854429-21854534)
chr1 (53-202)||(24158651-24158803)
chr1 (95-227)||(37947112-37947248)
chr1 (60-200)||(26760570-26760713)
chr1 (102-197)||(43757638-43757734)
chr1 (184-235)||(3159372-3159423)
chr1 (184-227)||(35369704-35369747)
chr1 (184-227)||(45333574-45333617)
chr1 (53-167)||(3919301-3919415)
chr1 (53-203)||(6396328-6396481)
chr1 (142-231)||(18610862-18610952)
chr1 (53-176)||(23399934-23400059)
chr1 (53-151)||(39815347-39815445)
chr1 (53-138)||(22674713-22674798)
chr1 (53-167)||(23554752-23554868)
chr1 (106-231)||(29094636-29094763)
chr1 (53-231)||(41564768-41564950)
chr1 (53-114)||(42843353-42843414)
chr1 (53-133)||(11038263-11038343)
chr1 (53-133)||(34157521-34157600)
chr1 (184-232)||(37685330-37685378)
chr1 (184-232)||(37700140-37700188)
chr1 (53-129)||(45350089-45350165)
[»] chr5 (22 HSPs)
chr5 (106-231)||(11306752-11306878)
chr5 (53-135)||(267014-267096)
chr5 (53-137)||(3031835-3031919)
chr5 (53-158)||(24329947-24330052)
chr5 (184-227)||(611868-611912)
chr5 (60-228)||(2863558-2863728)
chr5 (95-227)||(4434514-4434649)
chr5 (53-133)||(20985519-20985599)
chr5 (184-227)||(1079976-1080019)
chr5 (117-232)||(12203212-12203329)
chr5 (55-202)||(17489351-17489501)
chr5 (53-231)||(25585344-25585526)
chr5 (142-231)||(37821029-37821120)
chr5 (53-234)||(39032489-39032674)
chr5 (53-133)||(582857-582937)
chr5 (184-232)||(1764223-1764271)
chr5 (61-109)||(3167328-3167376)
chr5 (184-232)||(5721841-5721889)
chr5 (184-232)||(15479468-15479516)
chr5 (53-133)||(18729279-18729359)
chr5 (184-232)||(28306156-28306204)
chr5 (53-133)||(34693206-34693286)
[»] chr4 (28 HSPs)
chr4 (53-233)||(29577322-29577506)
chr4 (53-227)||(29863552-29863730)
chr4 (53-203)||(4949151-4949304)
chr4 (142-231)||(8487727-8487818)
chr4 (53-195)||(54803255-54803398)
chr4 (53-174)||(48791548-48791667)
chr4 (53-233)||(22893870-22894053)
chr4 (53-233)||(22945538-22945721)
chr4 (55-177)||(34114061-34114185)
chr4 (184-233)||(46634098-46634147)
chr4 (53-186)||(32901330-32901465)
chr4 (145-228)||(43307256-43307340)
chr4 (184-227)||(10250539-10250582)
chr4 (184-227)||(26724993-26725036)
chr4 (53-177)||(36947036-36947162)
chr4 (92-231)||(42915108-42915250)
chr4 (95-233)||(45678306-45678448)
chr4 (53-203)||(1987630-1987783)
chr4 (55-133)||(2788558-2788636)
chr4 (59-133)||(17805459-17805533)
chr4 (53-110)||(31995928-31995986)
chr4 (180-232)||(37380215-37380268)
chr4 (184-233)||(37997254-37997303)
chr4 (184-232)||(5622457-5622505)
chr4 (179-227)||(27964991-27965039)
chr4 (55-135)||(30250288-30250368)
chr4 (53-133)||(39449174-39449253)
chr4 (61-133)||(48650246-48650318)
[»] chr3 (29 HSPs)
chr3 (53-233)||(34208268-34208452)
chr3 (53-203)||(9158953-9159106)
chr3 (54-196)||(38471644-38471789)
chr3 (53-232)||(33971884-33972067)
chr3 (60-176)||(1261320-1261438)
chr3 (61-231)||(9027622-9027796)
chr3 (53-232)||(29705904-29706086)
chr3 (184-227)||(41505495-41505538)
chr3 (53-151)||(28300287-28300385)
chr3 (53-106)||(21239095-21239148)
chr3 (53-129)||(7351632-7351708)
chr3 (55-151)||(17118400-17118496)
chr3 (145-235)||(43149227-43149319)
chr3 (53-133)||(45517647-45517727)
chr3 (53-112)||(10347484-10347543)
chr3 (145-203)||(16295559-16295618)
chr3 (53-176)||(30664504-30664627)
chr3 (53-176)||(34145484-34145608)
chr3 (53-131)||(36799399-36799477)
chr3 (184-233)||(42477959-42478008)
chr3 (53-138)||(47276227-47276312)
chr3 (53-133)||(1295333-1295413)
chr3 (53-133)||(1834507-1834587)
chr3 (187-227)||(20548017-20548057)
chr3 (184-232)||(26014811-26014859)
chr3 (53-133)||(32151889-32151969)
chr3 (145-231)||(35368706-35368794)
chr3 (53-133)||(48205046-48205126)
chr3 (54-110)||(52381184-52381240)
[»] chr8 (21 HSPs)
chr8 (53-231)||(21649058-21649238)
chr8 (60-133)||(32234442-32234515)
chr8 (145-228)||(42651015-42651100)
chr8 (53-231)||(18549980-18550162)
chr8 (53-227)||(22203107-22203285)
chr8 (53-231)||(22836027-22836209)
chr8 (53-203)||(27300347-27300500)
chr8 (53-151)||(37784346-37784444)
chr8 (53-129)||(10591867-10591943)
chr8 (53-196)||(5742581-5742727)
chr8 (117-232)||(13924076-13924193)
chr8 (145-231)||(21273599-21273686)
chr8 (195-234)||(42768204-42768243)
chr8 (142-231)||(7678824-7678914)
chr8 (53-203)||(32674149-32674302)
chr8 (142-203)||(35701760-35701822)
chr8 (60-138)||(42688435-42688513)
chr8 (184-233)||(27325756-27325805)
chr8 (184-232)||(7271851-7271899)
chr8 (184-235)||(33451586-33451638)
chr8 (184-236)||(43397776-43397828)
[»] chr2 (25 HSPs)
chr2 (391-511)||(35796044-35796164)
chr2 (53-231)||(35705805-35705986)
chr2 (52-233)||(37076657-37076838)
chr2 (52-133)||(9384375-9384456)
chr2 (53-133)||(12208443-12208523)
chr2 (145-231)||(35518370-35518458)
chr2 (53-200)||(13850104-13850254)
chr2 (142-231)||(16463384-16463475)
chr2 (95-225)||(24491571-24491705)
chr2 (193-233)||(3838913-3838953)
chr2 (53-133)||(19637230-19637310)
chr2 (53-133)||(19835823-19835903)
chr2 (53-231)||(27529530-27529710)
chr2 (184-227)||(9207594-9207637)
chr2 (184-227)||(9990695-9990738)
chr2 (145-231)||(13711156-13711243)
chr2 (52-107)||(37878892-37878946)
chr2 (142-231)||(3091833-3091923)
chr2 (106-231)||(8757598-8757727)
chr2 (53-203)||(40721772-40721925)
chr2 (53-138)||(34373006-34373091)
chr2 (53-133)||(8352836-8352916)
chr2 (53-174)||(12256902-12257025)
chr2 (425-453)||(18706805-18706833)
chr2 (53-140)||(28494860-28494948)
[»] scaffold0514 (1 HSPs)
scaffold0514 (53-231)||(1735-1915)
[»] chr7 (19 HSPs)
chr7 (52-233)||(17039157-17039342)
chr7 (53-196)||(11070229-11070375)
chr7 (52-235)||(23034197-23034384)
chr7 (53-203)||(37969932-37970087)
chr7 (53-203)||(2600451-2600604)
chr7 (55-196)||(640395-640539)
chr7 (53-138)||(16567317-16567402)
chr7 (53-138)||(16598260-16598345)
chr7 (184-233)||(38861094-38861143)
chr7 (54-138)||(35590764-35590848)
chr7 (53-174)||(48522157-48522280)
chr7 (60-232)||(41910072-41910248)
chr7 (142-203)||(384643-384705)
chr7 (53-114)||(33341134-33341195)
chr7 (145-201)||(47379655-47379712)
chr7 (428-464)||(27846025-27846061)
chr7 (53-133)||(28548211-28548291)
chr7 (184-236)||(30941381-30941433)
chr7 (62-138)||(47379586-47379662)
[»] scaffold0058 (1 HSPs)
scaffold0058 (53-228)||(2944-3123)
[»] chr6 (12 HSPs)
chr6 (53-231)||(10557410-10557592)
chr6 (55-127)||(3401087-3401159)
chr6 (53-126)||(11635618-11635691)
chr6 (184-227)||(5080591-5080634)
chr6 (184-234)||(8098619-8098669)
chr6 (102-231)||(9395225-9395358)
chr6 (55-129)||(31934151-31934225)
chr6 (53-114)||(11742991-11743052)
chr6 (184-232)||(18065113-18065162)
chr6 (184-232)||(25811862-25811910)
chr6 (53-231)||(32253781-32253963)
chr6 (184-232)||(34047386-34047434)
[»] scaffold0592 (1 HSPs)
scaffold0592 (53-203)||(911-1064)
[»] scaffold0199 (1 HSPs)
scaffold0199 (184-227)||(8672-8715)
[»] scaffold0024 (1 HSPs)
scaffold0024 (55-231)||(48657-48837)
[»] scaffold0115 (1 HSPs)
scaffold0115 (145-231)||(15078-15164)
[»] scaffold0036 (1 HSPs)
scaffold0036 (145-231)||(18099-18185)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 334 - 611
Target Start/End: Original strand, 23472391 - 23472667
Alignment:
Q  334 gtactatccaattttggataatgtccatataaaaatagtactattgttctgattctccttcgtcactgttggcgcaattgttttcattcaggtcttcagg 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||| |||||| ||||||||||||||||||||||||||    
T  23472391 gtactatccaattttggataatgtccatataaaaatagtactattgttccgattcgtcttcgtcaccgttggcacaattgttttcattcaggtcttcagg 23472490  T
Q  434 ttgtttcctctcatatttttcgagaaggcaatgcttaagctgataagctagctaatcatggtcactcggttcatggtgtctggtggtcggattctttacc 533  Q
    |||||| | |||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||    
T  23472491 ttgtttgc-ctcatatttttcgagaaggcaatgcttgcgctgataagctagctaattatggtcactcggttcacggtgtctgatggtcggattctttacc 23472589  T
Q  534 ggagattatatgtgatcccttctattgaaacggttttgatttgtcttcttttagatttccataatcttttctttcttt 611  Q
    |||||||||| |||| ||||||| | || || |||||| |||| ||||||||||||||||||||||||||||||||||    
T  23472590 ggagattatacgtgagcccttctttcgagaccgttttggtttgccttcttttagatttccataatcttttctttcttt 23472667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 23472063 - 23472336
Alignment:
Q  7 attatcaattagatatcatcataaaaagtagtttgaaaaacgaagaagaaattatatttgtacaactatttttatataaattttgaataattttttcttt 106  Q
    |||||||||||||| |||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||| |||||||    
T  23472063 attatcaattagatgtcatcatagaaagtagtttgaaaaacgaaggagaaatgatatttgtacaactatttttatacaaattttgaataattgtttcttt 23472162  T
Q  107 catactcaagttatgttcttattctctttctaaacttttctctctattgtttctaaccaataacaagagagtataacaa-gttgtctcaaaagttgtaaa 205  Q
    |||| |||   | | |||||||| ||| ||| |  |||||||| ||||||||||||||||||||||||||||| | ||| ||||||  ||||||||||||    
T  23472163 catattcaccctgtattcttattttctctcttactttttctctttattgtttctaaccaataacaagagagtaaagcaaggttgtcctaaaagttgtaaa 23472262  T
Q  206 aagtaattgttcaaatatcattactcaaaacttattgtatgtatatttagagtgattaaaaacatttacaaccc 279  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23472263 aagtatttgttcaaatatcattactcaaaacttattgtatgtatatttagagtgattaaaaacatgtacaaccc 23472336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 185
Target Start/End: Original strand, 36794616 - 36794750
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttt--tctctc 150  Q
    |||||| |||||||||||| ||||||  ||||| ||||| |||| ||| |||||||||||||  |||| ||||||||||||||||  | |||  ||||||    
T  36794616 agaaatgatatttgtacaattattttggtataatttttggataaatttctctttcatactcagattatattcttattctctttcttcatttttctctctc 36794715  T
Q  151 tattgtttctaaccaataacaagagagtataacaa 185  Q
    |||||||| | |||||  | ||||||| |||||||    
T  36794716 tattgtttttgaccaacgaaaagagagaataacaa 36794750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 43105106 - 43105284
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct- 151  Q
    |||||| |||||||||||| ||||||| ||||| ||||  | |||||| ||| |||||||||  |||| |||||||||||| |||  | ||||||||||     
T  43105106 agaaatgatatttgtacaattatttttgtataatttttatacaattttctctctcatactcatattatcttcttattctctctcttcatttttctctctc 43105205  T
Q  152 -attgtttctaaccaataacaagagagtataa-caagttgtctcaaaagttgta-aaaagtaattgttcaaatatcatt 227  Q
     ||| ||| | |||||||| ||||||| | ||  |||||||| ||||| |||||  ||| |||||||||||||||||||    
T  43105206 cattatttttgaccaataaaaagagagaacaataaagttgtcccaaaaattgtaccaaaataattgttcaaatatcatt 43105284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 231
Target Start/End: Complemental strand, 40118785 - 40118603
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctct--c 150  Q
    |||||| ||||||||||||  |||||| ||||| ||||| | |||||| ||| |||||||||  |||| |||||||||||| |||    ||||||||  |    
T  40118785 agaaatgatatttgtacaatcatttttgtataatttttgtacaattttctctctcatactcacattatcttcttattctctctcttcttttttctctccc 40118686  T
Q  151 tattgtttctaaccaataacaagagagtataacaa-gttgtctcaaaagttgta-aaaagtaattgttcaaatatcattactc 231  Q
     |||| || |||||||||| |||| || | ||||| |||||| ||||| |||||  |||  ||||||||||||||||||||||    
T  40118685 cattgattttaaccaataaaaagaaagcacaacaaggttgtcccaaaaattgtagcaaaaaaattgttcaaatatcattactc 40118603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 48390146 - 48390026
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctcta 152  Q
    |||||||||||| ||||||| |||||| || || ||||| | ||  || ||| |||||||||  |||| ||||||||||||||||    |||||||||||    
T  48390146 agaaattatatt-gtacaaccatttttgtacaacttttgtacaaacttctctctcatactcacattatcttcttattctctttctttctttttctctcta 48390048  T
Q  153 ttgtttctaaccaataacaaga 174  Q
    |||||| |||||||||| ||||    
T  48390047 ttgtttttaaccaataaaaaga 48390026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 53 - 158
Target Start/End: Complemental strand, 21854534 - 21854429
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctcta 152  Q
    |||||| |||||||||||| ||||||  || || ||||| | || ||| ||| |||||||||  ||||||||||||| ||| ||||   |||||||||||    
T  21854534 agaaatgatatttgtacaattattttggtacaacttttgtacaactttctctctcatactcatattatgttcttattttctctctacctttttctctcta 21854435  T
Q  153 ttgttt 158  Q
    ||||||    
T  21854434 ttgttt 21854429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 53 - 202
Target Start/End: Original strand, 24158651 - 24158803
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctc-- 150  Q
    |||||| ||||||||||||| ||||   || || ||||  | || ||| |||||||||||||  ||||||||||||||||| ||||   |||||||||      
T  24158651 agaaatgatatttgtacaaccatttcggtacaacttttatacaactttatctttcatactcacattatgttcttattctctctctacctttttctctctt 24158750  T
Q  151 tattgtttctaaccaataacaagagagtataac-aagttgtctcaaaagttgt 202  Q
    |||||||| | |||||||| |||| || | ||| ||||||||||||| |||||    
T  24158751 tattgttttttaccaataagaagacagaacaacaaagttgtctcaaaggttgt 24158803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 95 - 227
Target Start/End: Complemental strand, 37947248 - 37947112
Alignment:
Q  95 aattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct--attgtttctaaccaataacaagagagtataacaa-gttgtc 191  Q
    |||||| ||| |||||||||  |||| |||||||||||| |||    ||||||||||  ||||||| | |||||| | ||||||| | ||||| ||||||    
T  37947248 aattttctctatcatactcacattatcttcttattctctctcttcctttttctctctccattgtttttgaccaatgagaagagagaacaacaaggttgtc 37947149  T
Q  192 tcaaaagttgtaa-aaagtaattgttcaaatatcatt 227  Q
     |||||||||||| ||| || ||||||||||||||||    
T  37947148 ccaaaagttgtaacaaaatagttgttcaaatatcatt 37947112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 200
Target Start/End: Original strand, 26760570 - 26760713
Alignment:
Q  60 atatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct--attgtt 157  Q
    ||||||||||||| |||||| || || ||||| | ||  |||||| ||||| |||  |||| |||||||||||| |||    ||||||||||  ||||||    
T  26760570 atatttgtacaaccatttttgtacaatttttgtacaacattttctctcataatcatattattttcttattctctctcttcttttttctctctccattgtt 26760669  T
Q  158 tctaaccaataacaagagagtataacaa-gttgtctcaaaagtt 200  Q
    | | |||||||| ||||||| | ||||| |||||||||||||||    
T  26760670 tttgaccaataaaaagagagcacaacaaggttgtctcaaaagtt 26760713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 43757638 - 43757734
Alignment:
Q  102 tctttcatactcaagttatgttcttattctctttctaaacttttctctctattgtttctaaccaataacaagagagtataac-aagttgtctcaaaa 197  Q
    |||||||||||||  ||||||| ||||||||| |||    ||||||| ||||||||| |||||||| | ||||||| | ||| ||||||||||||||    
T  43757638 tctttcatactcacattatgtttttattctctctctttctttttctccctattgtttttaaccaatgaaaagagagaacaacaaagttgtctcaaaa 43757734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 3159423 - 3159372
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactcaaaa 235  Q
    |||||||| ||||||||||||||| |  |||||||||||||||| |||||||    
T  3159423 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcaaaa 3159372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 35369747 - 35369704
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcatt 227  Q
    |||||||| ||||||||||||||| | |||||||||||||||||    
T  35369747 aagttgtcacaaaagttgtaaaaaatgattgttcaaatatcatt 35369704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 45333617 - 45333574
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcatt 227  Q
    |||||||| ||||||||||||||| | |||||||||||||||||    
T  45333617 aagttgtcacaaaagttgtaaaaaatgattgttcaaatatcatt 45333574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 167
Target Start/End: Original strand, 3919301 - 3919415
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctcta 152  Q
    |||||| ||||||||||||| |||||  ||||| ||||| | || ||| ||| ||||||||   |||| |||||||||||| |||  | |||| ||||||    
T  3919301 agaaatgatatttgtacaaccattttgttataatttttggacaactttctctctcatactcgcattatattcttattctctctctttatttttttctcta 3919400  T
Q  153 ttgtttctaaccaat 167  Q
    |||||| | ||||||    
T  3919401 ttgtttttgaccaat 3919415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 203
Target Start/End: Original strand, 6396328 - 6396481
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctc--tc 150  Q
    |||||| ||||| ||||||| |||||  || || ||||| | || ||| |||||||||||||  || |||| ||||||||| |||    |||||||  ||    
T  6396328 agaaatgatattggtacaaccattttggtacaacttttgtacaactttctctttcatactcacattgtgtttttattctctctcttcctttttctctttc 6396427  T
Q  151 tattgtttctaaccaataacaagagagtataac-aagttgtctcaaaagttgta 203  Q
    |||||||| |||||||| | ||||||| | ||| ||||||||||||| ||||||    
T  6396428 tattgtttttaaccaatgagaagagagaacaacaaagttgtctcaaatgttgta 6396481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 18610862 - 18610952
Alignment:
Q  142 ttttctctctattgtttctaaccaataacaagagagtata-acaagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactc 231  Q
    ||||||||||||||||| | |||||||| ||||||| | |   |||||||| ||||||||||   || ||||||||||||||||| |||||    
T  18610862 ttttctctctattgtttttgaccaataaaaagagaggaaaggaaagttgtcacaaaagttgtcttaattaattgttcaaatatcactactc 18610952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 176
Target Start/End: Complemental strand, 23400059 - 23399934
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctc--tc 150  Q
    |||||| ||||||||||||| ||||||||| || ||||| | ||| || ||| |||||||||  || | |||||||||||| |||    |||||||  ||    
T  23400059 agaaatgatatttgtacaaccatttttatacaacttttgtacaatcttctctctcatactcatattttcttcttattctctctcttcctttttctctttc 23399960  T
Q  151 tattgtttctaaccaataacaagaga 176  Q
    |||||||| | |||||||| ||||||    
T  23399959 tattgtttttgaccaataagaagaga 23399934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 39815347 - 39815445
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct 151  Q
    |||||||||||||||||||| |||||  || || ||||| | || ||| ||| |||||||||  |||| |||||||||||| |||  | ||||||||||    
T  39815347 agaaattatatttgtacaaccattttgctacaacttttggacaactttctctctcatactcacattatattcttattctctctctttatttttctctct 39815445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 22674713 - 22674798
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttcta 138  Q
    |||||| |||||||||||||||||||| || || ||||| | || ||| ||| |||||||||  |||| ||| |||||||| ||||    
T  22674713 agaaatgatatttgtacaactatttttgtacaatttttgtacaactttctctctcatactcacattattttcatattctctctcta 22674798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 167
Target Start/End: Original strand, 23554752 - 23554868
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct- 151  Q
    |||||| ||||||||||||| ||||||  |||| |||| || || ||| ||| |||||||||  |||| |||||||||||| |||    ||||||||||     
T  23554752 agaaatgatatttgtacaaccattttttgataatttttaaacaactttatctctcatactcacattatattcttattctctctcttcctttttctctctc 23554851  T
Q  152 -attgtttctaaccaat 167  Q
     ||||||| ||||||||    
T  23554852 cattgtttttaaccaat 23554868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 231
Target Start/End: Complemental strand, 29094763 - 29094636
Alignment:
Q  106 tcatactcaagttatgttcttattctctttctaaacttttctctctattgtttctaaccaataacaagagagtataacaag-ttgtctcaaaagttgta- 203  Q
    |||||||||  |||| |||||||||||| |||    |||||||||||||| || | |||||||| ||||||  | || ||| ||||| |||||||||||     
T  29094763 tcatactcacattatcttcttattctctctctttctttttctctctattgattttgaccaataagaagagaacacaataaggttgtcccaaaagttgtat 29094664  T
Q  204 -aaaagtaattgttcaaatatcattactc 231  Q
     ||||| | ||||||||||||||||||||    
T  29094663 caaaag-agttgttcaaatatcattactc 29094636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 231
Target Start/End: Complemental strand, 41564950 - 41564768
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctc-- 150  Q
    |||||| ||||||||||||| |||||| || || ||||| | ||  |||||||| |||||||  |||| |||||||| ||| |||    |||||||||      
T  41564950 agaaatgatatttgtacaaccatttttgtacaacttttgtacaaccttttcttttatactcacattatcttcttattttctctcttcctttttctctctg 41564851  T
Q  151 tattgtttctaaccaataacaagagagtataacaa-gttgtctcaaaagttgta--aaaagtaattgttcaaatatcattactc 231  Q
    |||||||| | |||||||| ||||||  | ||||| |||||| ||||| |||||  ||||| | |||||||||||||| |||||    
T  41564850 tattgtttttgaccaataagaagagaacacaacaaggttgtcccaaaaattgtaccaaaag-agttgttcaaatatcactactc 41564768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 42843414 - 42843353
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactca 114  Q
    |||||| ||||||||||||| ||||||  |||| ||||| |||||||||||| | |||||||    
T  42843414 agaaatgatatttgtacaacaattttttgataacttttgcataattttttctcttatactca 42843353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 11038263 - 11038343
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctct 133  Q
    |||||| |||||| |||||| |||||  ||||| ||||| | || ||| |||||||||||||  ||||||| |||||||||    
T  11038263 agaaatgatatttatacaaccattttggtataatttttgtacaactttctctttcatactcacattatgtttttattctct 11038343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 34157521 - 34157600
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctct 133  Q
    |||||| ||||||||||||| ||||||| |||| |||| || || ||| ||| |||||||||  |||| ||||||||||||    
T  34157521 agaaatgatatttgtacaaccattttta-ataattttttaacaactttatctctcatactcacattatcttcttattctct 34157600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 37685378 - 37685330
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactca 232  Q
    |||||||| ||||||||||||||| |  |||||||||||||||| ||||    
T  37685378 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 37685330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 37700140 - 37700188
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactca 232  Q
    |||||||| ||||||||||||||| |  |||||||||||||||| ||||    
T  37700140 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 37700188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 45350165 - 45350089
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttatt 129  Q
    |||||| |||||||||||| ||||||   |||| ||||  |||||||||||| |||||||||  |||| ||||||||    
T  45350165 agaaatgatatttgtacaattattttgtgataatttttagataattttttctctcatactcacattatattcttatt 45350089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 11306752 - 11306878
Alignment:
Q  106 tcatactcaagttatgttcttattctctttctaaacttttctctctattgtttctaaccaataacaagagag-tataacaagttgtctcaaaagttgtaa 204  Q
    ||||||||| |||||  ||||||||||| |||  | ||||||||||||||||| |||||||| | |||||||  | || ||||||||||||||||||||     
T  11306752 tcatactcacgttatactcttattctctatctttatttttctctctattgtttttaaccaatgaaaagagagaaaaaagaagttgtctcaaaagttgtat 11306851  T
Q  205 aaagtaattgttcaaatatcattactc 231  Q
     || || |||||||||||||| |||||    
T  11306852 caaatagttgttcaaatatcactactc 11306878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 267096 - 267014
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctcttt 135  Q
    |||||| |||||||||| || ||||| |||||| ||||| |||||||| || ||| |||||| |||||||| |||||||||||    
T  267096 agaaatgatatttgtactaccattttgatataatttttgtataattttctccttcgtactcacgttatgttattattctcttt 267014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 3031835 - 3031919
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttct 137  Q
    |||||| ||||||||||||| |||||| || || ||||| | || ||| |||||||||||||  |||| ||||||||||||||||    
T  3031835 agaaatgatatttgtacaaccatttttgtacaacttttgtacaactttctctttcatactcacattatcttcttattctctttct 3031919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 53 - 158
Target Start/End: Complemental strand, 24330052 - 24329947
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctcta 152  Q
    |||||| |||||||||||| ||||||  || || ||||| | || ||| ||| |||||||||  ||||||||||||| ||| ||||   |||||||||||    
T  24330052 agaaatgatatttgtacaattattttggtacaacttttgtacaactttctctctcatactcatattatgttcttattttctctctacctttttctctcta 24329953  T
Q  153 ttgttt 158  Q
    ||||||    
T  24329952 ttgttt 24329947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 611912 - 611868
Alignment:
Q  184 aagttgtctcaaaagttgt-aaaaagtaattgttcaaatatcatt 227  Q
    |||||||| |||||||||| |||||||||||||||||||||||||    
T  611912 aagttgtcacaaaagttgtcaaaaagtaattgttcaaatatcatt 611868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 228
Target Start/End: Original strand, 2863558 - 2863728
Alignment:
Q  60 atatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct--attgtt 157  Q
    ||||||| ||||| |||||||||||| ||||| | |||||| ||| | |||||||  |||| ||||||||||||||||    ||||||||||  ||| ||    
T  2863558 atatttgaacaaccatttttatataacttttgtacaattttctctct-atactcacattattttcttattctctttcttcctttttctctctccattatt 2863656  T
Q  158 tctaaccaataacaagagagtataacaa-gttgtctcaaaagttgtaaaaagtaattgttcaaatatcatta 228  Q
    | | |||||| | ||||||  | ||||| |||||| ||||| |||||  || |||||||| |||||||||||    
T  2863657 tttgaccaatgaaaagagataacaacaaggttgtcccaaaaattgtactaaataattgtttaaatatcatta 2863728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 227
Target Start/End: Original strand, 4434514 - 4434649
Alignment:
Q  95 aattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct--attgtttctaaccaataacaagagagtataacaagttgtct 192  Q
    |||||||||| |||||||||  ||||  ||||||||||| |||  | ||||||||||  ||||||| |||||||| | || |||| | || ||| ||||     
T  4434514 aattttttctctcatactcacattattatcttattctctctcttcatttttctctctccattgtttttaaccaatgaaaaaagagaaaaaaaagctgtca 4434613  T
Q  193 c-aaaagttgtaaaaagtaattgttcaaatatcatt 227  Q
    | ||||||||||  || |||||||||||||||||||    
T  4434614 ccaaaagttgtatgaaataattgttcaaatatcatt 4434649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 20985599 - 20985519
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctct 133  Q
    |||||| ||||||||||||| |||||| ||||| ||||| | || ||| ||| |||||||||  |||| ||||||||||||    
T  20985599 agaaatgatatttgtacaaccatttttgtataatttttgtacaactttctctctcatactcacattatcttcttattctct 20985519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 1079976 - 1080019
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcatt 227  Q
    |||||||| ||||| ||||||||| |||||||||||||||||||    
T  1079976 aagttgtcacaaaaattgtaaaaaataattgttcaaatatcatt 1080019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 12203212 - 12203329
Alignment:
Q  117 ttatgttcttattctctttctaaacttttctctctattgtttctaaccaataacaagagagtataacaag-ttgtctcaaaagttgta--aaaagtaatt 213  Q
    |||| |||||||||||| |||    |||||||||||||| || |||||||| | ||||||| | |||||| ||||| |||||||||||  ||||| | ||    
T  12203212 ttatcttcttattctctctcttcttttttctctctattggttttaaccaatgagaagagaggacaacaagattgtcacaaaagttgtaccaaaag-agtt 12203310  T
Q  214 gttcaaatatcattactca 232  Q
    |||||||||| ||||||||    
T  12203311 gttcaaatattattactca 12203329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 202
Target Start/End: Original strand, 17489351 - 17489501
Alignment:
Q  55 aaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct--a 152  Q
    |||| ||||||||||||||||||||  |||| ||||  | |||||| ||| |||||||||  | |  |||||||| ||| ||| || ||||||||||  |    
T  17489351 aaatgatatttgtacaactattttttgataatttttacacaattttctctctcatactcacatgacattcttattatctctcttaatttttctctctcca 17489450  T
Q  153 ttgtttctaaccaataacaagagagtataacaag-ttgtctcaaaagttgt 202  Q
    |||||| | |||||||| ||||||| | |||||| ||||| | ||||||||    
T  17489451 ttgtttttgaccaataagaagagagaaaaacaagattgtcaccaaagttgt 17489501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 231
Target Start/End: Complemental strand, 25585526 - 25585344
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctc-- 150  Q
    |||||| ||||||||||||| |||||| || || ||||| | || ||| ||| |||||||||  ||||||||||||||| | |||    |||||||||      
T  25585526 agaaatgatatttgtacaaccatttttgtacaacttttgtacaaatttctctctcatactcacattatgttcttattctttctcttcctttttctctcta 25585427  T
Q  151 tattgtttctaaccaataacaagagagtataac-aagttgtctcaaaagttgtaa-aaagtaattgttcaaatatcattactc 231  Q
    |||||||| | | |||||| |||| |  | ||| ||||| || |||||||||||| ||| || |||||||||||| |||||||    
T  25585426 tattgtttttgatcaataaaaagataacacaacaaagttctcccaaaagttgtaacaaaatagttgttcaaatattattactc 25585344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 37821120 - 37821029
Alignment:
Q  142 ttttctctctattgtttctaaccaataacaagagagtataacaa-gttgtctcaaaagttgta-aaaagtaattgttcaaatatcattactc 231  Q
    ||||||||||||||||| | |||||||| ||||||  | ||||| |||||| |||||||||||  ||| || |||||||||||||| |||||    
T  37821120 ttttctctctattgtttttgaccaataagaagagaacacaacaaggttgtcccaaaagttgtaccaaaatagttgttcaaatatcactactc 37821029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 234
Target Start/End: Complemental strand, 39032674 - 39032489
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttc-taaacttt-tctctc 150  Q
    |||||| ||||||||||||| |||||| || || ||||| | ||  || ||| |||||||||  |||| |||||||||||| || |   |||| ||||||    
T  39032674 agaaatgatatttgtacaaccatttttgtacaacttttgtacaaccttctctctcatactcatattatcttcttattctctctcttcctctttctctctc 39032575  T
Q  151 tattgtttctaaccaataacaagagagtataacaa-gttgtctcaaaagttgta--aaaagtaattgttcaaatatcattactcaaa 234  Q
    |||||||| | |||||||| ||||||  | ||||| |||||| ||||| |||||  ||||| | |||||||||||||| ||||||||    
T  39032574 tattgtttttgaccaataagaagagaacacaacaaggttgtcccaaaaattgtatcaaaag-agttgttcaaatatcactactcaaa 39032489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 582937 - 582857
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctct 133  Q
    |||||| |||||| ||||||||||||   |||| |||| || |||||| ||| |||||||||  |||| ||||||||||||    
T  582937 agaaatgatatttttacaactattttgtgataacttttaaacaattttctctctcatactcatattatattcttattctct 582857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 1764271 - 1764223
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactca 232  Q
    |||||||| || |||||||||||| | ||||||||||||||||| ||||    
T  1764271 aagttgtcacagaagttgtaaaaaatgattgttcaaatatcatttctca 1764223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 3167328 - 3167376
Alignment:
Q  61 tatttgtacaactatttttatataaattttgaataattttttctttcat 109  Q
    ||||| ||||||||||||  ||||| ||||||| |||||||||||||||    
T  3167328 tatttatacaactattttattataatttttgaacaattttttctttcat 3167376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 5721841 - 5721889
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactca 232  Q
    |||||||| ||||| ||||||||| || |||||||||||||||| ||||    
T  5721841 aagttgtcacaaaaattgtaaaaaatagttgttcaaatatcatttctca 5721889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 15479516 - 15479468
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactca 232  Q
    ||||||||  |||||||||||||| | ||||||||||||||||| ||||    
T  15479516 aagttgtcataaaagttgtaaaaaatgattgttcaaatatcatttctca 15479468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 18729359 - 18729279
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctct 133  Q
    |||||| ||||||||||||| |||||| || || ||||| | ||  || |||||||||||||  |||| ||||||||||||    
T  18729359 agaaatgatatttgtacaaccatttttgtacaacttttgtacaaccttctctttcatactcacattatcttcttattctct 18729279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 28306156 - 28306204
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactca 232  Q
    |||||||| ||||||||||||||| |  |||||||||||||||| ||||    
T  28306156 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 28306204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 34693286 - 34693206
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctct 133  Q
    |||||| ||||||||||||  |||||| ||||| ||||| | ||| || ||| |||||||||  |||| ||||||||||||    
T  34693286 agaaatgatatttgtacaatcatttttgtataatttttgtacaatcttctctctcatactcacattatcttcttattctct 34693206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 53 - 233
Target Start/End: Complemental strand, 29577506 - 29577322
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct- 151  Q
    |||||| |||||||||||||||||||| || || ||||| | || ||| | | |||||||||  |||| |||||||||||| |||  | ||||||||||     
T  29577506 agaaatgatatttgtacaactatttttgtacaatttttgtacaactttctttctcatactcacattatcttcttattctctctcttcatttttctctctc 29577407  T
Q  152 -attgtttctaaccaataacaagagagtataacaa-gttgtctcaaaagttgta-aaaagtaattgttcaaatatcattactcaa 233  Q
     ||||||| | |||||| | ||||||| | ||||| |||||| ||||| ||||| |||||||  ||||||||||| |||||||||    
T  29577406 cattgtttttgaccaatgaaaagagagaacaacaaggttgtcccaaaaattgtacaaaagtagatgttcaaatataattactcaa 29577322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 29863552 - 29863730
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct- 151  Q
    |||||| ||||||||||||| |||||  ||||| ||||| | || ||| ||||||||||| |  |||| || ||||||||| ||| |  | ||||||||     
T  29863552 agaaatgatatttgtacaaccattttggtataacttttgtacaactttctctttcatacttacattatatttttattctctctcttatttattctctctc 29863651  T
Q  152 -attgtttctaaccaataacaagagagtataacaa-gttgtctcaaaagttgta-aaaagtaattgttcaaatatcatt 227  Q
     ||| ||| |||||||||| ||| |||   ||||| ||||||||||||||||||  ||| |||||||||||||||||||    
T  29863652 cattatttttaaccaataagaagggagagcaacaatgttgtctcaaaagttgtaccaaaataattgttcaaatatcatt 29863730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 53 - 203
Target Start/End: Complemental strand, 4949304 - 4949151
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctc--tc 150  Q
    |||||| |||||||||||||||||||  || || ||||  |||| ||| ||| |||||||||  ||||||| ||||||||| |||    |||||||  ||    
T  4949304 agaaatgatatttgtacaactattttggtacaacttttctataactttatctctcatactcacattatgtttttattctctctcttcctttttctctttc 4949205  T
Q  151 tattgtttctaaccaataacaagagagtataac-aagttgtctcaaaagttgta 203  Q
    |||||||| |||||||| | |||| || | ||| ||||||||||||||||||||    
T  4949204 tattgtttttaaccaatgagaagaaagaacaacaaagttgtctcaaaagttgta 4949151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 8487727 - 8487818
Alignment:
Q  142 ttttctctctattgtttctaaccaataacaagagagtataacaag-ttgtctcaaaagttgtaa-aaagtaattgttcaaatatcattactc 231  Q
    ||||||||| ||| ||| | |||||||| ||||||| | |||||| |||||||||||||||||  |||  ||||||||||||||||||||||    
T  8487727 ttttctctccattatttttgaccaataaaaagagagcacaacaaggttgtctcaaaagttgtagcaaaaaaattgttcaaatatcattactc 8487818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 53 - 195
Target Start/End: Complemental strand, 54803398 - 54803255
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctcta 152  Q
    |||||| |||||||||||||||||||  |  || ||||| | || ||| ||| |||||||||  ||||||||||||||||| ||||   ||||||||| |    
T  54803398 agaaatgatatttgtacaactattttggtgcaatttttgtacaactttctctctcatactcacattatgttcttattctctctctacctttttctctcca 54803299  T
Q  153 ttgtttctaaccaataacaagagagtataac-aagttgtctcaa 195  Q
    || ||| | |||||| | ||||||| | ||| ||||||||||||    
T  54803298 ttttttttgaccaatgaaaagagagaacaacaaagttgtctcaa 54803255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 48791667 - 48791548
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctcta 152  Q
    |||||| |||||||||||||||||||| ||||| ||||  | || |||| || |||||||||  ||||||| ||||||||| |||   | ||| |||||     
T  48791667 agaaatgatatttgtacaactatttttgtataatttttagacaacttttactctcatactcacattatgttattattctctctct--tcctttttctctc 48791570  T
Q  153 ttgtttctaaccaataacaaga 174  Q
    |||||| | |||||||||||||    
T  48791569 ttgtttttgaccaataacaaga 48791548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 53 - 233
Target Start/End: Original strand, 22893870 - 22894053
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct- 151  Q
    |||||| ||||||||||||  |||||| || || |||| |  || ||| |||||||||||||  |||| |||||||||||| |||    || |||||||     
T  22893870 agaaatgatatttgtacaatcatttttgtacaattttttac-aactttctctttcatactcacattatcttcttattctctctctttctttgtctctctc 22893968  T
Q  152 -attgtttctaaccaataacaagagagtataacaag-ttgtctcaaaagttgta-aaaagtaattgttcaaatatcattactcaa 233  Q
     ||||||| | |||||||| ||||||| | |||||| ||||| |||||||||||  |||  | ||||||||||||||||||||||    
T  22893969 cattgtttttgaccaataaaaagagagcacaacaagattgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactcaa 22894053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 53 - 233
Target Start/End: Original strand, 22945538 - 22945721
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct- 151  Q
    |||||| ||||||||||||  |||||| || || |||| |  || ||| |||||||||||||  |||| |||||||||||| |||    || |||||||     
T  22945538 agaaatgatatttgtacaatcatttttgtacaattttttac-aactttctctttcatactcacattatcttcttattctctctctttctttgtctctctc 22945636  T
Q  152 -attgtttctaaccaataacaagagagtataacaag-ttgtctcaaaagttgta-aaaagtaattgttcaaatatcattactcaa 233  Q
     ||||||| | |||||||| ||||||| | |||||| ||||| |||||||||||  |||  | ||||||||||||||||||||||    
T  22945637 cattgtttttgaccaataaaaagagagcacaacaagattgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactcaa 22945721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 34114185 - 34114061
Alignment:
Q  55 aaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctc--ta 152  Q
    |||| |||||||||||||||||||  ||||| ||||  | || ||||||| ||||||||| ||||| |||| ||||||| |||  | |||||||||  ||    
T  34114185 aaatgatatttgtacaactattttattataactttttgacaactttttctctcatactcacgttatattctcattctctctcttcatttttctctccata 34114086  T
Q  153 ttgtttctaaccaataacaagagag 177  Q
    ||||||   |||||||| |||||||    
T  34114085 ttgttttggaccaataagaagagag 34114061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 46634147 - 46634098
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactcaa 233  Q
    |||||||| ||||||||||||||| | ||||||||||||||||| |||||    
T  46634147 aagttgtcacaaaagttgtaaaaaatgattgttcaaatatcatttctcaa 46634098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 186
Target Start/End: Original strand, 32901330 - 32901465
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct- 151  Q
    |||||| ||||||||||||||||||||  |||| ||||| | || ||| |||||||||||||  | |  |||||||| ||| ||| |  ||||||||||     
T  32901330 agaaatgatatttgtacaactattttttgataatttttgcacaactttctctttcatactcacatgacattcttattatctctcttactttttctctctc 32901429  T
Q  152 -attgtttctaaccaataacaagagagtataacaag 186  Q
     ||||||| | |||||||| ||||||| | ||||||    
T  32901430 cattgtttttgaccaataaaaagagagaaaaacaag 32901465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 43307340 - 43307256
Alignment:
Q  145 tctctctattgtttctaaccaataacaagagagtataacaa-gttgtctcaaaagttgtaaaaagtaattgttcaaatatcatta 228  Q
    |||||||||||||| |||||||||| ||||||| | ||||| ||| || ||||| |||||||||  | |||||||||||| ||||    
T  43307340 tctctctattgtttttaaccaataaaaagagagcacaacaaggttatcccaaaaattgtaaaaaaaagttgttcaaatataatta 43307256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 10250539 - 10250582
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcatt 227  Q
    |||||||| ||||||||||||||| || ||||||||||||||||    
T  10250539 aagttgtcacaaaagttgtaaaaaatagttgttcaaatatcatt 10250582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 26724993 - 26725036
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcatt 227  Q
    |||||||| |||||||| |||||| |||||||||||||||||||    
T  26724993 aagttgtcacaaaagttataaaaaataattgttcaaatatcatt 26725036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 177
Target Start/End: Complemental strand, 36947162 - 36947036
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttt--tctctc 150  Q
    |||||| |||||||||||||||||||  ||  | ||||| |||| ||| ||| |||||| ||  ||||||| ||||||||| |||| | |||  ||||||    
T  36947162 agaaatgatatttgtacaactattttggtaatatttttgtataactttctctctcatacccacattatgtttttattctctctctacatttttctctctc 36947063  T
Q  151 tattgtttctaaccaataacaagagag 177  Q
    |||||||| | | |||||| |||||||    
T  36947062 tattgtttttgatcaataaaaagagag 36947036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 42915250 - 42915108
Alignment:
Q  92 aataattttttctttcatactcaagttatgttcttattctctttctaaacttttctct--ctattgtttctaaccaataacaagagagtataac-aagtt 188  Q
    ||||| ||| ||| ||||||||| |||||  ||||||||||| |||    ||||||||  ||||||||| |||||||| | ||||||| | ||  |||||    
T  42915250 aataaatttctctctcatactcacgttatactcttattctctctcttcctttttctctttctattgtttttaaccaatgaaaagagagaaaaaagaagtt 42915151  T
Q  189 gtctcaaaagttgtaaaaagtaattgttcaaatatcattactc 231  Q
    ||| |||||||||||  || || |||||||||||||| |||||    
T  42915150 gtcacaaaagttgtatcaaatagttgttcaaatatcactactc 42915108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 233
Target Start/End: Original strand, 45678306 - 45678448
Alignment:
Q  95 aattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct--attgtttctaaccaataacaagagagtataacaag-ttgtc 191  Q
    |||||| ||| |||||| ||  |||| |||||||||||| |||    ||||||||||  ||||||| | |||||||| ||||||| | |||||| ||||     
T  45678306 aattttatctctcatacccacattatcttcttattctctctcttcctttttctctctccattgtttttgaccaataaaaagagagaacaacaaggttgta 45678405  T
Q  192 tcaaaagttgtaa-aaagtaattgttcaaatatcattactcaa 233  Q
     |||||||||||  ||| || ||||||||||||||||||||||    
T  45678406 ccaaaagttgtaccaaaatagttgttcaaatatcattactcaa 45678448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 203
Target Start/End: Complemental strand, 1987783 - 1987630
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct- 151  Q
    |||||| ||||||||||||| |||||  || || ||||| | || ||| ||| ||| |||||  ||||||| ||||||||| ||||   ||||||||||     
T  1987783 agaaatgatatttgtacaaccattttagtacaatttttgtacaactttctctctcacactcacattatgtttttattctctctctacctttttctctctc 1987684  T
Q  152 -attgtttctaaccaataacaagagagtataac-aagttgtctcaaaagttgta 203  Q
     ||||||| | |||||| | ||||||| | ||| ||||||||||||| ||||||    
T  1987683 cattgtttttgaccaatgaaaagagagaacaacaaagttgtctcaaaggttgta 1987630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 2788636 - 2788558
Alignment:
Q  55 aaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctct 133  Q
    |||| ||||||||||||  |||||  ||||| |||| ||| ||||| ||||||||||| | ||| ||||||||||||||    
T  2788636 aaatgatatttgtacaatcattttagtataatttttaaatcattttctctttcatactaatgttgtgttcttattctct 2788558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 17805459 - 17805533
Alignment:
Q  59 tatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctct 133  Q
    |||||||||||||||||||||  |||| ||||  | |||||| ||| |||||||||  |||| ||||||||||||    
T  17805459 tatatttgtacaactattttttaataattttttgacaattttctctctcatactcacattattttcttattctct 17805533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 31995986 - 31995928
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttg-aataattttttctttcata 110  Q
    |||||| ||||||||||||||||||||  ||||||||||  |||||||| |||||||||    
T  31995986 agaaatgatatttgtacaactattttttgataaattttgtgataattttatctttcata 31995928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 37380268 - 37380215
Alignment:
Q  180 taacaagttgtctcaaaagttgtaaaaag-taattgttcaaatatcattactca 232  Q
    |||||| |||| |||||||||||| |||  ||||||||||||||||||||||||    
T  37380268 taacaaattgtttcaaaagttgtacaaatataattgttcaaatatcattactca 37380215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 37997303 - 37997254
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactcaa 233  Q
    |||||||| ||||||||||||||| |  |||||||||||||||| |||||    
T  37997303 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcaa 37997254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 5622505 - 5622457
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactca 232  Q
    |||||||| ||||||||||||||| |  |||||||||||||||| ||||    
T  5622505 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 5622457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 27965039 - 27964991
Alignment:
Q  179 ataacaagttgtctcaaaagttgtaaaaagtaattgttcaaatatcatt 227  Q
    |||| |||||||| ||||||| ||||||| || ||||||||||||||||    
T  27965039 ataaaaagttgtcacaaaagtcgtaaaaaatagttgttcaaatatcatt 27964991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 30250368 - 30250288
Alignment:
Q  55 aaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctcttt 135  Q
    |||| |||||||||||||||||||  || || | ||| | || ||||||| |||||||||  ||||||| |||||||||||    
T  30250368 aaatgatatttgtacaactattttggtaaaactattgtacaactttttctctcatactcacattatgtttttattctcttt 30250288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 39449174 - 39449253
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctct 133  Q
    |||||| |||||| ||||||||||||   |||| ||||||  |||||||||| |||||||||  | |||||||||||||||    
T  39449174 agaaatgatatttatacaactattttgtgataacttttgac-aattttttctctcatactcacatcatgttcttattctct 39449253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 133
Target Start/End: Complemental strand, 48650318 - 48650246
Alignment:
Q  61 tatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctct 133  Q
    ||||||||||||||||||| || || ||||| | || ||| ||| |||||||||  |||| ||||||||||||    
T  48650318 tatttgtacaactatttttgtaaaacttttgtacaactttctctctcatactcatattatcttcttattctct 48650246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 53 - 233
Target Start/End: Original strand, 34208268 - 34208452
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttt--tctctc 150  Q
    |||||| |||||||||||| |||||| ||| || ||||  |||||||| ||||||||| |||  ||||||| ||||||||| |||  | |||  ||||||    
T  34208268 agaaatgatatttgtacaattattttgatacaacttttatataattttctctttcatattcatattatgtttttattctctctcttcatttttctctctc 34208367  T
Q  151 tattgtttctaaccaataacaagagagtataac-aagttgtctcaaaagttgta-aaaagtaattgttcaaatatcattactcaa 233  Q
    |||||||| ||| |||| | ||||||| | ||| |||||||||||||| |||||  ||| |||||||  |||||||| |||||||    
T  34208368 tattgtttttaatcaatgagaagagagaaaaacaaagttgtctcaaaaattgtattaaaataattgtcaaaatatcactactcaa 34208452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 53 - 203
Target Start/End: Complemental strand, 9159106 - 9158953
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct- 151  Q
    |||||| ||||||||||||| |||||| || || ||||| | |||||| |||||||||||||  |||| |||||||| ||| |||    ||||||||||     
T  9159106 agaaatgatatttgtacaaccatttttgtacaatttttgtacaattttctctttcatactcacattatcttcttattttctgtctttctttttctctctt 9159007  T
Q  152 -attgtttctaaccaataacaagagagtataacaa-gttgtctcaaaagttgta 203  Q
     ||||||| | |||||| | ||||||| | ||||| |||||| |||||||||||    
T  9159006 cattgtttttgaccaatgaaaagagagcacaacaaggttgtcccaaaagttgta 9158953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 38471644 - 38471789
Alignment:
Q  54 gaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaactttt--ctctct 151  Q
    ||||| ||||||||||||| |||||  || || ||||| | |||||| ||| |||||||||  ||||||| ||||||||| |||  | ||||  ||||||    
T  38471644 gaaatgatatttgtacaaccattttggtacaacttttgtacaattttctctctcatactcacattatgtttttattctctctcttcatttttccctctct 38471743  T
Q  152 attgtttctaaccaataacaagagagtataac-aagttgtctcaaa 196  Q
    ||||||| |||||||| | ||||||| | ||| |||||||||||||    
T  38471744 attgtttttaaccaatgagaagagagaacaacaaagttgtctcaaa 38471789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 232
Target Start/End: Original strand, 33971884 - 33972067
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct- 151  Q
    |||||| |||||| |||||| ||| || || || ||||| | |||||| ||| |||||||||  |||| |||||||| | | |||    ||||||||||     
T  33971884 agaaatgatatttatacaaccattcttgtacaacttttgtacaattttatctctcatactcacattatcttcttattttttctctttctttttctctctc 33971983  T
Q  152 -attgtttctaaccaataacaagagagtataacaag-ttgtctcaaaagttgtaa-aaagtaattgttcaaatatcattactca 232  Q
     ||||||| |||||||| | ||||||| | |||||| ||||||||||| |||||  ||| || |||||||||||||||||||||    
T  33971984 cattgtttttaaccaatgagaagagagaacaacaaggttgtctcaaaaattgtaccaaaatagttgttcaaatatcattactca 33972067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 176
Target Start/End: Complemental strand, 1261438 - 1261320
Alignment:
Q  60 atatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctc--tctattgtt 157  Q
    ||||||||||||||||||| ||| || ||||| | || ||| |||||||||||||  ||||||| ||||||||| |||    |||||||  |||||||||    
T  1261438 atatttgtacaactattttgatacaatttttgtacaactttctctttcatactcacattatgtttttattctctctcttcctttttctctatctattgtt 1261339  T
Q  158 tctaaccaataacaagaga 176  Q
    | |||||||| | ||||||    
T  1261338 tttaaccaatgagaagaga 1261320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 61 - 231
Target Start/End: Original strand, 9027622 - 9027796
Alignment:
Q  61 tatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct--attgttt 158  Q
    |||||||||||| ||||||||| || ||||| | || ||| ||| | |||||||  |||| |||||||||||| | |    ||||||||||  |||||||    
T  9027622 tatttgtacaaccatttttatacaacttttgtacaactttatctctgatactcacattatcttcttattctctcttttcttttttctctctccattgttt 9027721  T
Q  159 ctaaccaataacaagagagtataacaag-ttgtctcaaaagttgtaa-aaagtaattgttcaaatatcattactc 231  Q
     | |||||||| ||||||| | |||||| ||||  |||||||||||  ||| || ||||||||||||||||||||    
T  9027722 ttgaccaataagaagagagaacaacaaggttgtaccaaaagttgtaccaaaatagttgttcaaatatcattactc 9027796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 53 - 232
Target Start/End: Original strand, 29705904 - 29706086
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctc--tc 150  Q
    |||||| |||||| ||||| ||||||   |||| ||||  |||||||| |||||||||||||  ||||  ||||||||||| |||  | |||||||  ||    
T  29705904 agaaatgatatttatacaattattttgtgataattttttgataattttctctttcatactcacattattctcttattctctctcttcatttttctctatc 29706003  T
Q  151 tattgtttctaaccaataacaagagag-tataacaagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactca 232  Q
     ||||||| | |||||| | |||||||  | || |||||||| |||||||||||  || || |||||||||||||| ||||||    
T  29706004 cattgttttttaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatagttgttcaaatatcactactca 29706086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 41505538 - 41505495
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcatt 227  Q
    |||||||| ||||||||||||||| |||||||||||||||||||    
T  41505538 aagttgtcacaaaagttgtaaaaaataattgttcaaatatcatt 41505495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 28300287 - 28300385
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct 151  Q
    |||||| ||||||||||||| |||||  ||||| ||||  | || ||||||||| |||||||| |||| |||||||||||| |||  | ||||||||||    
T  28300287 agaaatgatatttgtacaaccattttattataattttttgacaactttttcttttatactcaaattatattcttattctctctcttcatttttctctct 28300385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 21239148 - 21239095
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttcttt 106  Q
    |||||| |||||||||||||||||||   |||| ||||||||||||||||||||    
T  21239148 agaaatgatatttgtacaactattttatgataatttttgaataattttttcttt 21239095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 7351708 - 7351632
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttatt 129  Q
    |||||| ||||||||||||| |||||| ||||| ||||| | |||||| ||| |||||||||  |||| ||||||||    
T  7351708 agaaatgatatttgtacaaccatttttgtataatttttgtacaattttctctctcatactcatattatcttcttatt 7351632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 17118400 - 17118496
Alignment:
Q  55 aaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct 151  Q
    |||| ||||||||||||| |||||| || || ||||| | |||||||||| |||||||||  |||| || ||||||||| |||   |||||||||||    
T  17118400 aaatgatatttgtacaaccatttttgtacaacttttgtacaattttttctctcatactcacattatcttattattctctctctttccttttctctct 17118496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 43149319 - 43149227
Alignment:
Q  145 tctctctattgtttctaaccaataacaagagagtataacaag-ttgtctcaaaagttgtaa-aaagtaattgttcaaatatcattactcaaaa 235  Q
    |||||| ||||||| | |||||||| ||||||| | |||||| ||||  |||||||||||  ||| || ||||||||||||||||||||||||    
T  43149319 tctctccattgtttttgaccaataagaagagagaacaacaaggttgtaccaaaagttgtaccaaaatagttgttcaaatatcattactcaaaa 43149227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 45517727 - 45517647
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctct 133  Q
    |||||| ||||||||||||| |||||| ||||| ||||| |||| ||| | ||||||| |||  |||| ||||||||||||    
T  45517727 agaaatgatatttgtacaaccatttttgtataacttttgtataactttctttttcatattcacattatcttcttattctct 45517647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 10347543 - 10347484
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatact 112  Q
    |||||| ||||||||||||| ||||| |||||| |||||||||| ||| ||| |||||||    
T  10347543 agaaatgatatttgtacaaccattttaatataacttttgaataaatttctctctcatact 10347484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 16295559 - 16295618
Alignment:
Q  145 tctctctattgtttctaaccaataacaagagagtataac-aagttgtctcaaaagttgta 203  Q
    |||||||||||||| | |||||||| ||||||| | ||| ||||||||||||||||||||    
T  16295559 tctctctattgtttttgaccaataaaaagagagaacaacaaagttgtctcaaaagttgta 16295618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 176
Target Start/End: Original strand, 30664504 - 30664627
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctcta 152  Q
    |||||| ||||||||||||  |||||| || || ||||| | || ||| ||| |||||||||  |||| |||||||| ||| |||    |||||||||||    
T  30664504 agaaatgatatttgtacaatcatttttgtacaacttttgtacaactttctctctcatactcacattatcttcttattttctctcttcctttttctctcta 30664603  T
Q  153 ttgtttctaaccaataacaagaga 176  Q
    |||||| | |||||||| ||||||    
T  30664604 ttgtttttgaccaataaaaagaga 30664627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 176
Target Start/End: Complemental strand, 34145608 - 34145484
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaact--tttctctc 150  Q
    |||||| |||||||||||||||||||  ||| ||||||  |||  ||| ||||||||||||| |||||||| ||||| | | |||| | |  ||||||||    
T  34145608 agaaatgatatttgtacaactattttagtat-aattttttatatctttctctttcatactcacgttatgtttttattttatctctacatttgtttctctc 34145510  T
Q  151 tattgtttctaaccaataacaagaga 176  Q
    |||| ||| | |||||||| ||||||    
T  34145509 tattatttttgaccaataaaaagaga 34145484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 36799399 - 36799477
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattct 131  Q
    |||||| ||||||||||||||||||||  |||| |||| || |||||| | | |||||||||  |||| ||||||||||    
T  36799399 agaaatgatatttgtacaactattttttgataacttttaaacaattttatttctcatactcacattatattcttattct 36799477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 42478008 - 42477959
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactcaa 233  Q
    |||||||| ||||| || |||||| ||||||||||||||||||| |||||    
T  42478008 aagttgtcacaaaaattataaaaaataattgttcaaatatcatttctcaa 42477959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 47276227 - 47276312
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttcta 138  Q
    ||||||||||||||||||||||||||| |   ||||||  | |||||| ||| ||||||||| ||||| || ||| ||||| ||||    
T  47276227 agaaattatatttgtacaactatttttttgacaattttagacaattttctctctcatactcacgttatatttttactctctctcta 47276312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 1295333 - 1295413
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctct 133  Q
    |||||| |||||||||||||||||||   |||| ||||| | || ||||||| |||||||||  |||| |||||| |||||    
T  1295333 agaaatgatatttgtacaactattttgtgataacttttggacaactttttctctcatactcacattatattcttactctct 1295413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 1834507 - 1834587
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctct 133  Q
    |||||| ||||||||||||| |||||  || || ||||||| || ||| ||| |||||||||  |||| ||||||||||||    
T  1834507 agaaataatatttgtacaaccattttgctacaatttttgaacaactttctctctcatactcacattatattcttattctct 1834587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 20548017 - 20548057
Alignment:
Q  187 ttgtctcaaaagttgtaaaaagtaattgttcaaatatcatt 227  Q
    ||||| ||||||||||||||| | |||||||||||||||||    
T  20548017 ttgtcacaaaagttgtaaaaactgattgttcaaatatcatt 20548057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 26014859 - 26014811
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactca 232  Q
    |||||||| ||||||||||||||| |  |||||||||||||||| ||||    
T  26014859 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 26014811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 32151889 - 32151969
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctct 133  Q
    |||||| |||| ||||||| ||||||| ||||| ||||| ||||  || ||| |||||||||  |||| ||||||||||||    
T  32151889 agaaatgatatgtgtacaattatttttgtataatttttgtataaccttctctctcatactcatattatcttcttattctct 32151969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 35368706 - 35368794
Alignment:
Q  145 tctctctattgtttctaaccaataacaagagagtataacaag-ttgtctcaaaagttgtaaaaagtaa-ttgttcaaatatcattactc 231  Q
    |||||||||||||| | |||||| | ||||||| | |||||| ||||| |||||||||||  ||  || ||||||||||||||||||||    
T  35368706 tctctctattgttttttaccaatgaaaagagagcacaacaagattgtcccaaaagttgtagcaaacaagttgttcaaatatcattactc 35368794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 48205046 - 48205126
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctct 133  Q
    |||||| ||||||||||||  |||||| ||||| ||||| | |||||| ||| |||||||||  |||| || |||||||||    
T  48205046 agaaatgatatttgtacaatcatttttgtataatttttgtacaattttctctctcatactcacattatctttttattctct 48205126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 52381184 - 52381240
Alignment:
Q  54 gaaattatatttgtacaactatttttatataaattttgaataattttttctttcata 110  Q
    ||||| ||||||||||||| |||||  ||||| ||||| | ||||||||||||||||    
T  52381184 gaaatgatatttgtacaaccattttggtataacttttgtagaattttttctttcata 52381240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 231
Target Start/End: Complemental strand, 21649238 - 21649058
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctcta 152  Q
    |||||| ||||||||||||| |||||| || || ||||| | || ||| |||||||||||||  |||| ||| |||||||| |||    ||||||||| |    
T  21649238 agaaatgatatttgtacaaccatttttgtacaacttttgtacaactttctctttcatactcacattatcttcctattctctctcttcctttttctctcca 21649139  T
Q  153 ttgtttctaaccaataacaagagagtataacaa-gttgtctcaaaagttgta-aaaagtaattgttcaaatatcattactc 231  Q
    || ||| | |||||||| ||||||| | ||||| |||||| |||||||||||  |||  | ||||||||||||||||||||    
T  21649138 ttatttttgaccaataaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactc 21649058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 32234515 - 32234442
Alignment:
Q  60 atatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctct 133  Q
    |||||||||||||||||||||||||| ||||  | |||||| ||||||||| |||  |||| ||||||||||||    
T  32234515 atatttgtacaactatttttatataatttttatacaattttctctttcatattcacattatcttcttattctct 32234442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 42651015 - 42651100
Alignment:
Q  145 tctctctattgtttctaaccaataacaagagagtataacaa-gttgtctcaaaagttgta-aaaagtaattgttcaaatatcatta 228  Q
    |||||||||||||| |||||||| | ||||||| | ||||| ||||||||||||||||||  ||| || |||||||||||||||||    
T  42651015 tctctctattgtttttaaccaatgagaagagagaacaacaaggttgtctcaaaagttgtaccaaaatagttgttcaaatatcatta 42651100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 53 - 231
Target Start/End: Original strand, 18549980 - 18550162
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttt--tctctc 150  Q
    |||||| ||||||||||||  |||||| ||||| ||||| | ||  || ||| |||||||||  |||| |||||||||||| |||    |||  ||||||    
T  18549980 agaaatgatatttgtacaatcatttttgtataacttttgtacaacattctctctcatactcatattatcttcttattctctctcttcctttttctctctc 18550079  T
Q  151 tattgtttctaaccaataacaagagagtataacaa-gttgtctcaaaagttgta-aaaagtaattgttcaaatatcattactc 231  Q
    |||||||| | | |||||| ||||||  | ||||| |||||| |||||||||||  ||| || ||||||||||||||||||||    
T  18550080 tattgtttttgatcaataagaagagaacacaacaaggttgtcccaaaagttgtaccaaaatagttgttcaaatatcattactc 18550162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 22203285 - 22203107
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctc--tc 150  Q
    |||||| ||||||||||||| |||||| || || ||||| | ||| |||||| |||||||||  |||| |||||||||||| |||    |||||||  ||    
T  22203285 agaaatgatatttgtacaaccatttttgtacaacttttgtacaatattttctctcatactcatattatcttcttattctctctcttcctttttctctttc 22203186  T
Q  151 tattgtttctaaccaataacaagagagtataacaa-gttgtctcaaaagttgta-aaaagtaattgttcaaatatcatt 227  Q
     ||||||| | |||||| | ||||||| | ||||| |||||| |||||||||||  |||  | ||||||||||||||||    
T  22203185 cattgtttttgaccaatcaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgttcaaatatcatt 22203107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 53 - 231
Target Start/End: Complemental strand, 22836209 - 22836027
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct- 151  Q
    |||||| ||||||||||||| ||||| ||| |||||||| | || ||| ||| |||||||||  |||| |||||||||||| |||    ||||||||||     
T  22836209 agaaatgatatttgtacaaccattttcatacaaattttgtacaactttctctctcatactcacattatcttcttattctctctcttcctttttctctctc 22836110  T
Q  152 -attgtttctaaccaataacaagagagtataacaa-gttgtctcaaaagttgta-aaaagtaattgttcaaatatcattactc 231  Q
     ||||||| | |||||| | ||||||| | ||||| ||| || ||||| |||||  |||  | ||||||||||||||||||||    
T  22836109 cattgtttttgaccaatgaaaagagagcacaacaaggttatcccaaaaattgtagcaaaaaagttgttcaaatatcattactc 22836027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 203
Target Start/End: Original strand, 27300347 - 27300500
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttt--tctctc 150  Q
    |||||| ||||||||||||| |||||| || || ||||| | || ||| ||| ||||| |||  |||| |||||||||||| |||    |||  ||||||    
T  27300347 agaaatgatatttgtacaaccatttttgtacaacttttgtacaactttctctctcatattcacattatcttcttattctctctcttcctttttctctctc 27300446  T
Q  151 tattgtttctaaccaataacaagagagtataacaag-ttgtctcaaaagttgta 203  Q
    |||||||| | |||||||| |||||| || |||||| ||||| |||||||||||    
T  27300447 tattgtttttgaccaataagaagagaatacaacaagattgtcccaaaagttgta 27300500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 151
Target Start/End: Complemental strand, 37784444 - 37784346
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct 151  Q
    |||||| ||||||||||||| |||||  ||||| ||||| | |||||| ||| |||||||||  ||||||| ||||||||| ||| |  ||||||||||    
T  37784444 agaaatgatatttgtacaaccattttggtataacttttgtacaattttctctctcatactcatattatgtttttattctctctcttacgttttctctct 37784346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 10591943 - 10591867
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttatt 129  Q
    |||||| |||||||||||||||||||||||||| ||||| | || ||| ||||| ||| |||  |||| ||||||||    
T  10591943 agaaatgatatttgtacaactatttttatataacttttgtacaactttctcttttatattcacattatcttcttatt 10591867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 5742727 - 5742581
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct- 151  Q
    |||||| ||||||||||||| |||||  || || ||||| | || ||| ||| |||||||||  ||||||| ||||||||| ||||   ||||||||||     
T  5742727 agaaatgatatttgtacaaccattttggtacaacttttgtacaactttatctctcatactcacattatgtttttattctctctctatctttttctctctc 5742628  T
Q  152 -attgtttctaaccaataacaagagagtataac-aagttgtctcaaa 196  Q
     ||||||| | |||||| | ||||||| | ||| |||||||||||||    
T  5742627 cattgtttttgaccaatgagaagagagaacaacaaagttgtctcaaa 5742581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 13924076 - 13924193
Alignment:
Q  117 ttatgttcttattctctttctaaacttttctctctattgtttctaaccaataacaagagagtataacaag-ttgtctcaaaagttgta--aaaagtaatt 213  Q
    |||| |||||||||||| |||    |||||||||||||| || |||||||| | ||||||| | |||||| ||||| |||||||||||  ||||| | ||    
T  13924076 ttatcttcttattctctctcttcttttttctctctattggttttaaccaatgagaagagaggacaacaagattgtcacaaaagttgtaccaaaag-agtt 13924174  T
Q  214 gttcaaatatcattactca 232  Q
    |||||||||| ||||||||    
T  13924175 gttcaaatattattactca 13924193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 21273686 - 21273599
Alignment:
Q  145 tctctctattgtttctaaccaataacaagagagtata-acaagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactc 231  Q
    |||||||||||||| |||||||| | ||||||| | | | |||||||| |||||||||||  || || |||||||||||||| |||||    
T  21273686 tctctctattgtttttaaccaatgaaaagagagaaaagaaaagttgtcacaaaagttgtatgaaatagttgttcaaatatcactactc 21273599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 42768243 - 42768204
Alignment:
Q  195 aaagttgtaaaaagtaattgttcaaatatcattactcaaa 234  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  42768243 aaagttgtaaaaaataattgttcaaatatcatttctcaaa 42768204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 7678824 - 7678914
Alignment:
Q  142 ttttctctctattgtttctaaccaataacaagagagtataac-aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactc 231  Q
    ||||||||| ||||||| |||||||| | ||||||| | ||  |||||||  |||||||||||  || || ||||||||||||||||||||    
T  7678824 ttttctctccattgtttttaaccaatgaaaagagagaaaaaagaagttgttacaaaagttgtatcaaatagttgttcaaatatcattactc 7678914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 203
Target Start/End: Complemental strand, 32674302 - 32674149
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctc--tc 150  Q
    |||||| ||||||||||||| |||||  ||||| ||||| | || ||| ||| |||||||||  ||||||| ||||||||| |||    |||||||  ||    
T  32674302 agaaatgatatttgtacaaccattttggtataacttttgtacaactttctctctcatactcacattatgtttttattctctatcttcctttttctctttc 32674203  T
Q  151 tattgtttctaaccaataacaagagagtataac-aagttgtctcaaaagttgta 203  Q
    |||||||| |||||||| | ||| ||  | ||| ||||||||||||| ||||||    
T  32674202 tattgtttttaaccaatgagaagggataacaacaaagttgtctcaaaggttgta 32674149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 35701822 - 35701760
Alignment:
Q  142 ttttctctctattgtttctaaccaataacaagagagtataacaag-ttgtctcaaaagttgta 203  Q
    ||||||||||||||||| | |||||||| ||||||  |||||||| ||||| |||||||||||    
T  35701822 ttttctctctattgtttttgaccaataagaagagaacataacaagattgtcccaaaagttgta 35701760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 42688435 - 42688513
Alignment:
Q  60 atatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttcta 138  Q
    ||||||||||||  |||||| ||||| ||||| |||||||| ||| |||||||||  |||| | |||||||||| ||||    
T  42688435 atatttgtacaatcatttttgtataacttttgtataattttctctctcatactcatattatctacttattctctctcta 42688513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 27325805 - 27325756
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactcaa 233  Q
    |||||||| ||||||||||||||| |  |||||||||||||||| |||||    
T  27325805 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcaa 27325756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 7271899 - 7271851
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactca 232  Q
    |||||||| |||||||||| |||| | ||||||||||||||||| ||||    
T  7271899 aagttgtcacaaaagttgttaaaaattattgttcaaatatcatttctca 7271851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 33451586 - 33451638
Alignment:
Q  184 aagttgtctcaaaagttgt-aaaaagtaattgttcaaatatcattactcaaaa 235  Q
    |||||||| |||||||||| ||||| | |||||||||||||| ||||||||||    
T  33451586 aagttgtcacaaaagttgtcaaaaaatgattgttcaaatatcgttactcaaaa 33451638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 43397828 - 43397776
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactcaaaac 236  Q
    |||||||  ||||||||||||||| |  |||||||||||||||| ||||||||    
T  43397828 aagttgtaacaaaagttgtaaaaaatggttgttcaaatatcatttctcaaaac 43397776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 511
Target Start/End: Complemental strand, 35796164 - 35796044
Alignment:
Q  391 cttcgtcactgttggcgcaattgttttcattcaggtcttcaggttgtttcctctcatatttttcgagaaggcaatgcttaagctgataagctagctaatc 490  Q
    |||||| || |||||| ||| |||||| | |||||| | |||||||||||||||||||||||||| ||| |||||| ||| |||| |||||| || || |    
T  35796164 cttcgtaaccgttggcacaactgtttttaatcaggtatccaggttgtttcctctcatatttttcgtgaatgcaatgattacgctggtaagcttgcaaacc 35796065  T
Q  491 atggtcactcggttcatggtg 511  Q
    |||| |||||| |||| ||||    
T  35796064 atggacactcgattcaaggtg 35796044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 231
Target Start/End: Complemental strand, 35705986 - 35705805
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct- 151  Q
    |||||| ||||||||||||| |||||| ||||| |||| |  || ||| ||||||||||||| ||||| |||||||||||| |||    ||||||||||     
T  35705986 agaaatgatatttgtacaaccatttttgtataattttttac-aactttctctttcatactcacgttatcttcttattctctctcttcctttttctctctc 35705888  T
Q  152 -attgtttctaaccaataacaagagagtataacaag-ttgtctcaaaagttgta-aaaagtaattgttcaaatatcattactc 231  Q
     ||||||| | |||||| | ||||||| | |||||| ||||| |||||||||||  |||  | ||||||||||||||||||||    
T  35705887 cattgtttttgaccaatgaaaagagagcacaacaagattgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactc 35705805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 52 - 233
Target Start/End: Original strand, 37076657 - 37076838
Alignment:
Q  52 aagaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct 151  Q
    ||||||| |||||||||||| ||||||||||||| ||||| |||||||| ||||| ||| |||  |||| |||||||||| ||| |    |||||||||     
T  37076657 aagaaatgatatttgtacaattatttttatataatttttgtataattttctcttttatattcacattatcttcttattcttttttt--ttttttctctcc 37076754  T
Q  152 attgtttctaaccaataacaagagagtataacaa-gttgtctcaaaagttgta--aaaagtaattgttcaaatatcattactcaa 233  Q
    ||||||  | |||||| | |||| || ||||||| |||||| ||||| |||||  ||||| | ||||||||||| ||||||||||    
T  37076755 attgttattgaccaatgagaagaaagaataacaaggttgtcacaaaaattgtactaaaag-agttgttcaaataacattactcaa 37076838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 9384375 - 9384456
Alignment:
Q  52 aagaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctct 133  Q
    ||||||| ||||||||||||||||||||| |||| ||||| | || ||| ||| |||||||||  |||| ||||||||||||    
T  9384375 aagaaatgatatttgtacaactatttttacataatttttgtacaactttctctctcatactcatattatcttcttattctct 9384456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 12208443 - 12208523
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctct 133  Q
    |||||| ||||||||||||| |||||| || || ||||| |||| ||| |||||||||||||  |||| ||||||||||||    
T  12208443 agaaatgatatttgtacaaccatttttgtacaacttttgtataactttctctttcatactcacattattttcttattctct 12208523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 35518370 - 35518458
Alignment:
Q  145 tctctctattgtttctaaccaataacaagagagtataac-aagttgtctcaaaagttgta-aaaagtaattgttcaaatatcattactc 231  Q
    |||||||||||||| | |||||||| ||||||| | ||| |||||||| |||||||||||  ||| || ||||||||||||||||||||    
T  35518370 tctctctattgtttttgaccaataagaagagagaacaacaaagttgtcccaaaagttgtatcaaaatagttgttcaaatatcattactc 35518458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 53 - 200
Target Start/End: Complemental strand, 13850254 - 13850104
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct- 151  Q
    |||||| |||||| |||||  ||||| |||||| ||||| | || ||| ||| |||||||||  ||||||| ||||||||||| || ||||||||||||     
T  13850254 agaaatgatatttatacaatcattttgatataatttttgtacaactttctctctcatactcacattatgtttttattctctttttacacttttctctctc 13850155  T
Q  152 -attgtttctaaccaataacaagagagtataac-aagttgtctcaaaagtt 200  Q
     ||| ||| | |||||| | ||||||| | ||| || ||||||||||||||    
T  13850154 cattatttttgaccaatgaaaagagagaacaacaaaattgtctcaaaagtt 13850104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 16463384 - 16463475
Alignment:
Q  142 ttttctctctattgtttctaaccaataacaagagagtataacaag-ttgtctcaaaagttgta--aaaagtaattgttcaaatatcattactc 231  Q
    ||||||||||||||||| | |||||||| ||||||| | |||||| ||||| |||||||||||  | ||| | ||||||||||||||||||||    
T  16463384 ttttctctctattgtttttgaccaataagaagagagcacaacaagattgtcccaaaagttgtaccataag-agttgttcaaatatcattactc 16463475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 24491705 - 24491571
Alignment:
Q  95 aattttttctttcatactcaagttatgttcttattctctttctaaacttttctct--ctattgtttctaaccaataacaagagagtataacaag-ttgtc 191  Q
    |||||| ||| || ||||||  |||| |||||||||||| |||    ||||||||  ||||||||| |||||||||| ||||||| | || ||| |||||    
T  24491705 aattttctctctcgtactcacattatcttcttattctctctctttctttttctctttctattgtttttaaccaataagaagagagaacaataagattgtc 24491606  T
Q  192 tcaaaagttgta--aaaagtaattgttcaaatatca 225  Q
    ||||||||||||  ||||| ||||||||||||||||    
T  24491605 tcaaaagttgtatcaaaag-aattgttcaaatatca 24491571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 3838913 - 3838953
Alignment:
Q  193 caaaagttgtaaaaagtaattgttcaaatatcattactcaa 233  Q
    ||||||||||||||| ||||||||||||||||||| |||||    
T  3838913 caaaagttgtaaaaaataattgttcaaatatcatttctcaa 3838953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 19637230 - 19637310
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctct 133  Q
    |||||| ||||||||||||| |||||| ||||| ||||| | || ||| |||||||||||||  ||||  |||||||||||    
T  19637230 agaaatgatatttgtacaaccatttttgtataacttttgtacaactttctctttcatactcacattatcatcttattctct 19637310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 19835823 - 19835903
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctct 133  Q
    |||||| ||||||||||||| |||||| ||||| ||||| | || ||| |||||||||||||  ||||  |||||||||||    
T  19835823 agaaatgatatttgtacaaccatttttgtataacttttgtacaactttctctttcatactcacattatcatcttattctct 19835903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 231
Target Start/End: Original strand, 27529530 - 27529710
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctcta 152  Q
    |||||| ||||||||| ||| |||||| || || ||||| | || ||| ||| | |||||||  |||| |||||||||||| |||    ||||||||| |    
T  27529530 agaaatgatatttgtagaaccatttttgtacaacttttgtacaactttctctattatactcacattatcttcttattctctctcttcctttttctctcca 27529629  T
Q  153 ttgtttctaaccaataacaagagagtataacaa-gttgtctcaaaagttgta-aaaagtaattgttcaaatatcattactc 231  Q
    |||||| | |||||| | |||| || | ||||| |||||| | |||||||||  |||| | ||||||||||||||||||||    
T  27529630 ttgtttttgaccaatgaaaagaaagcacaacaaggttgtcccgaaagttgtagcaaagaagttgttcaaatatcattactc 27529710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 9207637 - 9207594
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcatt 227  Q
    |||||||| ||||||||||||||| | |||||||||||||||||    
T  9207637 aagttgtcacaaaagttgtaaaaaatgattgttcaaatatcatt 9207594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 9990738 - 9990695
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcatt 227  Q
    |||||||| ||||||||||||||| || ||||||||||||||||    
T  9990738 aagttgtcacaaaagttgtaaaaattagttgttcaaatatcatt 9990695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 13711156 - 13711243
Alignment:
Q  145 tctctctattgtttctaaccaataacaagagagtataac-aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactc 231  Q
    |||||| ||||||| |||||||| | ||||||| | ||  |||||||| ||||||||||| ||| || |||||||||||||| |||||    
T  13711156 tctctccattgtttttaaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtacaaaatagttgttcaaatatcactactc 13711243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 37878892 - 37878946
Alignment:
Q  52 aagaaattatatttgtacaactatttttatataaattttgaataattttttctttc 107  Q
    ||||||||||||||||||||||| |||||||| |||||| ||||| ||| ||||||    
T  37878892 aagaaattatatttgtacaacta-ttttatatcaatttttaataaatttctctttc 37878946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 3091833 - 3091923
Alignment:
Q  142 ttttctctctattgtttctaaccaataacaagagagtataac-aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactc 231  Q
    ||||||||| ||||||| | |||||| | ||||||| | ||  |||||||| |||||||||||  || ||||||||||||||||| |||||    
T  3091833 ttttctctccattgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaataattgttcaaatatcactactc 3091923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 8757598 - 8757727
Alignment:
Q  106 tcatactcaagttatgttcttattctctttctaaacttttctctct--attgtttctaaccaataacaagagagtataacaag-ttgtctcaaaagttgt 202  Q
    |||||||||  |||| |||||||||||| |||    ||||||||||  ||||||| | |||||||| ||||||| | |||||| ||||  ||||||||||    
T  8757598 tcatactcacattatcttcttattctctctctttctttttctctctccattgtttttgaccaataagaagagagaacaacaaggttgtaccaaaagttgt 8757697  T
Q  203 aa-aaagtaattgttcaaatatcattactc 231  Q
    |  ||| || ||||||||||||||||||||    
T  8757698 accaaaatagttgttcaaatatcattactc 8757727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 203
Target Start/End: Original strand, 40721772 - 40721925
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctc--tc 150  Q
    |||||| ||||||||||| | |||||  || || ||||| | || ||| ||| |||||||||  ||||||| ||||||||| |||  | |||||||  |     
T  40721772 agaaatgatatttgtacagccattttggtacaacttttgtacaactttctctctcatactcacattatgtttttattctctctcttcatttttctctttt 40721871  T
Q  151 tattgtttctaaccaataacaagagagtataac-aagttgtctcaaaagttgta 203  Q
    |||||||| |||||||| | ||||||| | ||| ||||||||||||| ||||||    
T  40721872 tattgtttttaaccaatgagaagagagaacaacaaagttgtctcaaaggttgta 40721925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 34373006 - 34373091
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttcta 138  Q
    |||||| ||||||||||||| |||||  ||||| ||||| | || ||| ||| |||||||||  ||||||| ||||||||| ||||    
T  34373006 agaaatgatatttgtacaaccattttggtataatttttgtacaactttctctctcatactcacattatgtttttattctctctcta 34373091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 8352836 - 8352916
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctct 133  Q
    |||||| ||||||||||||||||||||  |||| ||||  | |||||| ||| |||||||||  |||| |||||| |||||    
T  8352836 agaaatgatatttgtacaactattttttaataacttttagacaattttctctctcatactcacattatattcttactctct 8352916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 12256902 - 12257025
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttt--tctctc 150  Q
    |||||| ||||||||||||  |||||| ||||| ||||| | ||  || ||| |||||||||  |||| |||||||||||| |||  | |||  ||||||    
T  12256902 agaaatgatatttgtacaatcatttttgtataacttttgtacaaccttctctctcatactcacattatcttcttattctctctcttcatttttctctctc 12257001  T
Q  151 tattgtttctaaccaataacaaga 174  Q
    |||||||| | |||||||| ||||    
T  12257002 tattgtttttgaccaataagaaga 12257025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 425 - 453
Target Start/End: Original strand, 18706805 - 18706833
Alignment:
Q  425 gtcttcaggttgtttcctctcatattttt 453  Q
    |||||||||||||||||||||||||||||    
T  18706805 gtcttcaggttgtttcctctcatattttt 18706833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 28494860 - 28494948
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaatttt-gaataattttttctttcatactcaagttatgttcttattctctttctaaa 140  Q
    |||||| ||||||||||||||||||||| | || |||| ||| || ||| ||||||| |||||  ||||||| ||||| ||| ||||||    
T  28494860 agaaatgatatttgtacaactatttttaaacaacttttggaacaactttctctttcacactcatattatgtttttattttctctctaaa 28494948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 53 - 231
Target Start/End: Complemental strand, 1915 - 1735
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctcta 152  Q
    |||||| ||||||||||||| |||||| ||||| ||||| | ||| || ||| |||||||||  |||| |||||||||||| |  |   || ||||||||    
T  1915 agaaatgatatttgtacaaccatttttgtataacttttgtacaatcttctctctcatactcacattatcttcttattctctcttcatttttctctctcta 1816  T
Q  153 ttgtttctaaccaataacaagagagtataacaag-ttgtctcaaaagttgta--aaaagtaattgttcaaatatcattactc 231  Q
    || ||| | |||||||| ||||||  |||||||| ||||| |||||||||||  ||||| | |||||||||||||| |||||    
T  1815 ttatttttgaccaataagaagagaacataacaagattgtcccaaaagttgtaccaaaag-agttgttcaaatatcactactc 1735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 52 - 233
Target Start/End: Original strand, 17039157 - 17039342
Alignment:
Q  52 aagaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct 151  Q
    ||||||| |||||||||||||||||||| ||||| ||||| | || ||| ||| |||||||||  |||| |||||||||||| |||  | ||||||||||    
T  17039157 aagaaatgatatttgtacaactatttttgtataatttttgtacaactttctctctcatactcacattatcttcttattctctctcttcatttttctctct 17039256  T
Q  152 --attgtttctaaccaataacaagagagtataacaa-gttgtctcaaaagttgta-aaaagtaattgttcaaatatcattactcaa 233  Q
      ||||||| | |||||| | ||||||  | ||||| |||||| ||||| || ||  |||  ||||||||||||||| ||||||||    
T  17039257 gcattgtttttgaccaatgaaaagagaacacaacaaggttgtcccaaaaattatagcaaaaaaattgttcaaatatcgttactcaa 17039342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 196
Target Start/End: Original strand, 11070229 - 11070375
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttt--tctctc 150  Q
    |||||| ||||||||||||| |||||  ||||| ||||| | || ||| ||| |||||||||  ||||||||||||||||| ||||   |||  ||||||    
T  11070229 agaaatgatatttgtacaaccattttagtataacttttgtacaactttctctatcatactcacattatgttcttattctctctctacctttttctctctc 11070328  T
Q  151 tattgtttctaaccaataacaagagagtataac-aagttgtctcaaa 196  Q
    |||||||| | |||||| | ||||||| | ||| |||||||||||||    
T  11070329 tattgtttttgaccaatgaaaagagagaagaacaaagttgtctcaaa 11070375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 52 - 235
Target Start/End: Complemental strand, 23034384 - 23034197
Alignment:
Q  52 aagaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttt--tctct 149  Q
    ||||||| ||||||||||||| |||||| || || ||||| | ||  | |||| |||||||||  |||| |||||||||||| |||    |||  |||||    
T  23034384 aagaaatgatatttgtacaaccatttttgtacaatttttgtacaacctattctctcatactcacattatcttcttattctctctcttcttttttctctct 23034285  T
Q  150 ctattgtttctaaccaataacaagagagtataacaa-gttgtctcaaaagttgta--aaaagtaattgttcaaatatcattactcaaaa 235  Q
    ||||||||| | |||||||| || |||| | ||||| |||||| |||||||||||  ||||| | |||||||||||||| |||||||||    
T  23034284 ctattgtttttgaccaataagaaaagagcacaacaaggttgtcccaaaagttgtaccaaaag-agttgttcaaatatcactactcaaaa 23034197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 53 - 203
Target Start/End: Original strand, 37969932 - 37970087
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttt----tctc 148  Q
    |||||| ||||||||||||||||||| ||| || ||||| | || ||| ||| |||||||||  ||||||| ||||||||| ||||   |||    ||||    
T  37969932 agaaatgatatttgtacaactattttgatacaacttttgtacaactttctctctcatactcacattatgtttttattctctctctacctttttttctctc 37970031  T
Q  149 tctattgtttctaaccaataacaagagagtataac-aagttgtctcaaaagttgta 203  Q
    |||||||||| | |||||| | ||||||| | ||| ||||||||||||| ||||||    
T  37970032 tctattgtttttgaccaatgagaagagagaacaacaaagttgtctcaaatgttgta 37970087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 203
Target Start/End: Complemental strand, 2600604 - 2600451
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct- 151  Q
    |||||| ||||||||||||| |||||  || || ||||| | || ||||||| ||| |||||  ||||||| ||||||||| ||||   ||||||||||     
T  2600604 agaaatgatatttgtacaaccattttagtacaacttttgtacaactttttctctcacactcacattatgtttttattctctctctacctttttctctctc 2600505  T
Q  152 -attgtttctaaccaataacaagagagtataac-aagttgtctcaaaagttgta 203  Q
     ||||||| | |||||| | ||||||| | ||| ||||||||||||| ||||||    
T  2600504 cattgtttttgaccaatgagaagagagaacaacaaagttgtctcaaaggttgta 2600451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 55 - 196
Target Start/End: Original strand, 640395 - 640539
Alignment:
Q  55 aaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct--a 152  Q
    |||| ||||||||||||| |||||| || || ||||| | || ||| ||| |||||||||  ||||||| ||||||| | |||| | ||||||||||  |    
T  640395 aaatgatatttgtacaaccatttttgtacaatttttgtacaactttctctctcatactcacattatgtttttattctttctctacatttttctctctcaa 640494  T
Q  153 ttgtttctaaccaataacaagagagtataac-aagttgtctcaaa 196  Q
    |||||| | |||||| | ||||||| | ||| |||||||||||||    
T  640495 ttgtttttgaccaatgagaagagagaacaacaaagttgtctcaaa 640539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 16567317 - 16567402
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttcta 138  Q
    |||||| ||||||||||||| |||||  ||||| ||||  | |||||| |||||||||||||  |||| |||||||||||| ||||    
T  16567317 agaaatgatatttgtacaaccattttattataactttttgacaattttctctttcatactcacattatattcttattctctctcta 16567402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 16598345 - 16598260
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttcta 138  Q
    |||||| ||||||||||||| |||||  ||||| ||||  | |||||| |||||||||||||  |||| |||||||||||| ||||    
T  16598345 agaaatgatatttgtacaaccattttattataactttttgacaattttctctttcatactcacattatattcttattctctctcta 16598260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 38861143 - 38861094
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactcaa 233  Q
    |||||||| ||||||||||||||| | ||||||||||||||||| |||||    
T  38861143 aagttgtcacaaaagttgtaaaaaatgattgttcaaatatcatttctcaa 38861094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 35590848 - 35590764
Alignment:
Q  54 gaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttcta 138  Q
    ||||| ||||||||||||| |||||| || || ||||  |||||||| ||| |||||||||  ||||||| ||||||||| ||||    
T  35590848 gaaatcatatttgtacaaccatttttgtacaatttttagataattttctctctcatactcacattatgttattattctctctcta 35590764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 48522157 - 48522280
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttt--tctctc 150  Q
    |||||| ||||||||||||| |||||| || || ||||  | || ||||||| |||||||||  ||||||| ||||||||| |||    |||  ||||||    
T  48522157 agaaatgatatttgtacaaccatttttgtacaacttttagacaactttttctctcatactcacattatgttattattctctctcttcctttttctctctc 48522256  T
Q  151 tattgtttctaaccaataacaaga 174  Q
    |||||||| | |||||||||||||    
T  48522257 tattgtttttgaccaataacaaga 48522280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 232
Target Start/End: Complemental strand, 41910248 - 41910072
Alignment:
Q  60 atatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttt--tctctctattgtt 157  Q
    ||||||||||||| |||||| || || ||||| | ||  || ||| |||||||||  |||| |||||||||||| |||    |||  |||||||||||||    
T  41910248 atatttgtacaaccatttttgtacaacttttgtacaaccttctctctcatactcacattatcttcttattctctctcttcctttttctctctctattgtt 41910149  T
Q  158 tctaaccaataacaagagagtataacaa-gttgtctcaaaagttgta--aaaagtaattgttcaaatatcattactca 232  Q
    | | |||||||| ||||||  | ||||| ||||||  ||||||||||  ||||| |||||||||||||||| ||||||    
T  41910148 tttgaccaataagaagagaacacaacaaggttgtcctaaaagttgtaccaaaag-aattgttcaaatatcactactca 41910072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 384643 - 384705
Alignment:
Q  142 ttttctctctattgtttctaaccaataacaagagagtataac-aagttgtctcaaaagttgta 203  Q
    ||||||||||||| ||| |||||||| | ||||||| ||||| ||||||||||||| ||||||    
T  384643 ttttctctctattttttttaaccaatgagaagagagaataacaaagttgtctcaaaggttgta 384705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 33341195 - 33341134
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactca 114  Q
    |||||| ||||||||||||| |||||  ||||| ||||| | |||||| |||||||||||||    
T  33341195 agaaatgatatttgtacaacaattttagtataacttttgtacaattttctctttcatactca 33341134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 47379655 - 47379712
Alignment:
Q  145 tctctctattgtttctaaccaataacaagagagtataac-aagttgtctcaaaagttg 201  Q
    |||||||||||||| |||||||| | ||||||| | ||| ||||||||||||||||||    
T  47379655 tctctctattgtttttaaccaatgagaagagagaacaacaaagttgtctcaaaagttg 47379712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 464
Target Start/End: Complemental strand, 27846061 - 27846025
Alignment:
Q  428 ttcaggttgtttcctctcatatttttcgagaaggcaa 464  Q
    |||||||| |||||||||||||||| |||||||||||    
T  27846061 ttcaggttatttcctctcatattttccgagaaggcaa 27846025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 28548291 - 28548211
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctct 133  Q
    |||||| |||||||||||||||||||  || || ||||| | || ||| ||| |||||||||  ||||||| |||||||||    
T  28548291 agaaatgatatttgtacaactattttggtacaacttttgtacaactttctctctcatactcacattatgtttttattctct 28548211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 30941433 - 30941381
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactcaaaac 236  Q
    |||||||| ||||||||||||||| |  |||||||||||||||| ||| ||||    
T  30941433 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctccaaac 30941381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 47379586 - 47379662
Alignment:
Q  62 atttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttcta 138  Q
    ||||||||||| ||||| ||| || ||||| |||||||| ||| |||||||||  ||||||| ||| ||||| ||||    
T  47379586 atttgtacaacaattttgatacaacttttgtataattttctctctcatactcacattatgtttttagtctctctcta 47379662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 53 - 228
Target Start/End: Original strand, 2944 - 3123
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct- 151  Q
    ||||||||||||| |||||| |||||| |||| |||||| | |||||||||| |||||||||  |||| |||| ||||||| |||    ||||||||||     
T  2944 agaaattatatttatacaaccatttttttatatattttgtacaattttttctctcatactcacattatcttctcattctctctcttcctttttctctctc 3043  T
Q  152 -attgtttctaaccaataacaagagagtataa-caagttgtctcaaaagttgta-aaaagtaattgttcaaatatcatta 228  Q
     ||||||| | |||||| | ||||||| | ||  |||||||| |||||||||||  |||  | |||||||||||||||||    
T  3044 cattgtttttgaccaatgaaaagagagcacaataaagttgtcccaaaagttgtagcaaaaaagttgttcaaatatcatta 3123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 231
Target Start/End: Original strand, 10557410 - 10557592
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct- 151  Q
    |||||| ||||||||||||| ||||||||| || ||||  |||| ||| ||| |||||||||  |||| ||| |||||||| |||    ||||||||||     
T  10557410 agaaatgatatttgtacaaccatttttatacaacttttatataactttatctctcatactcatattatcttcctattctctctctttctttttctctctc 10557509  T
Q  152 -attgtttctaaccaataacaagagagtataacaag-ttgtctcaaaagttgta-aaaagtaattgttcaaatatcattactc 231  Q
     ||||||| | |||||| | ||||||||| |||||| ||||  |||||||||||  |||  | ||||||||||||||||||||    
T  10557510 cattgtttttgaccaatgaaaagagagtacaacaagattgttccaaaagttgtagcaaaaaagttgttcaaatatcattactc 10557592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 3401087 - 3401159
Alignment:
Q  55 aaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttctta 127  Q
    |||| |||||||||||||||||||   |||| |||||||  |||||||||||||||||||  |||||||||||    
T  3401087 aaatgatatttgtacaactattttgtgataatttttgaacgattttttctttcatactcatattatgttctta 3401159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 11635618 - 11635691
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttctt 126  Q
    |||||| ||||||||||||| |||||   |||| |||| ||||| ||| |||||||||||||| ||||||||||    
T  11635618 agaaatgatatttgtacaacaattttatgataattttttaataactttctctttcatactcaaattatgttctt 11635691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 5080591 - 5080634
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcatt 227  Q
    |||||||| |||||||||||||||||  ||||||||||||||||    
T  5080591 aagttgtcacaaaagttgtaaaaagtggttgttcaaatatcatt 5080634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 8098619 - 8098669
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactcaaa 234  Q
    |||||||| ||||||||||||||| |  |||||||||||||||| ||||||    
T  8098619 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcaaa 8098669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 231
Target Start/End: Complemental strand, 9395358 - 9395225
Alignment:
Q  102 tctttcatactcaagttatgttcttattctctttctaaacttttctctct--attgtttctaaccaataacaagagagtataacaag-ttgtctcaaaag 198  Q
    |||||||||||||  |||| |||||||||||| |||    ||||||||||  ||||||| | |||||| | ||||||| | |||||| ||||| ||||||    
T  9395358 tctttcatactcacattatcttcttattctctctcttcttttttctctctccattgtttttgaccaatgataagagagcacaacaagattgtcccaaaag 9395259  T
Q  199 ttgtaaaaagtaa-ttgttcaaatatcattactc 231  Q
    |||||  ||  || ||||||||||||||||||||    
T  9395258 ttgtagcaaaaaagttgttcaaatatcattactc 9395225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 31934225 - 31934151
Alignment:
Q  55 aaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttatt 129  Q
    |||| ||||||||||||| ||||| ||| || ||||||| |||||| ||| |||||||||  |||| ||||||||    
T  31934225 aaatgatatttgtacaaccattttgatacaatttttgaacaattttctctgtcatactcacattatattcttatt 31934151  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 11743052 - 11742991
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactca 114  Q
    |||||| ||||||||||||||||||||  |||| ||||  | |||||||||| |||||||||    
T  11743052 agaaataatatttgtacaactattttttgataatttttagacaattttttctctcatactca 11742991  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 18065113 - 18065162
Alignment:
Q  184 aagttgtctcaaaagttgt-aaaaagtaattgttcaaatatcattactca 232  Q
    |||||||| |||||||||| ||||||| ||||||||||||||||| ||||    
T  18065113 aagttgtcacaaaagttgtcaaaaagtgattgttcaaatatcatttctca 18065162  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 25811862 - 25811910
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactca 232  Q
    |||||||| ||||||||||||||| |  |||||||||||||||| ||||    
T  25811862 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 25811910  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 231
Target Start/End: Original strand, 32253781 - 32253963
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttttctctct- 151  Q
    |||||| ||||||||||||| | ||||  |||| |||   |||||||| ||| |||||||||  ||||  |||||||| || |||  | ||||||||||     
T  32253781 agaaatgatatttgtacaaccactttttgataattttgtgataattttctctctcatactcacattatactcttattccctctcttcatttttctctctc 32253880  T
Q  152 -attgtttctaaccaataacaagagagt--ataacaagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactc 231  Q
     ||||||| |||||||| | |||||||   | || || ||||| |||||||||||  || || |||||||||||||| |||||    
T  32253881 cattgtttttaaccaatgaaaagagagagaaaaaaaaattgtcacaaaagttgtaccaaatagttgttcaaatatcactactc 32253963  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 34047434 - 34047386
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactca 232  Q
    |||||||| ||||||||||||||| |  |||||||||||||||| ||||    
T  34047434 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 34047386  T

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Target: scaffold0592 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 203
Target Start/End: Original strand, 911 - 1064
Alignment:
Q  53 agaaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttt--tctctc 150  Q
    |||||| ||||||||||||| | ||| |||||| ||||| |||||||| ||| |||||||||  ||||||| ||||| ||| |||    |||  ||||||    
T  911 agaaatgatatttgtacaaccaatttgatataatttttgtataattttctctctcatactcacattatgtttttattttctctcttcctttttctctctc 1010  T
Q  151 tattgtttctaaccaataacaagagagtataac-aagttgtctcaaaagttgta 203  Q
    | |||||| | |||||| | ||||||| | ||| ||||| ||||||||||||||    
T  1011 tgttgtttttgaccaatgaaaagagagaacaacaaagttatctcaaaagttgta 1064  T

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Target: scaffold0199 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 8715 - 8672
Alignment:
Q  184 aagttgtctcaaaagttgtaaaaagtaattgttcaaatatcatt 227  Q
    |||||||| ||||||||||||||| | |||||||||||||||||    
T  8715 aagttgtcacaaaagttgtaaaaaatgattgttcaaatatcatt 8672  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 231
Target Start/End: Original strand, 48657 - 48837
Alignment:
Q  55 aaattatatttgtacaactatttttatataaattttgaataattttttctttcatactcaagttatgttcttattctctttctaaacttt--tctctcta 152  Q
    |||| ||||||||||||  |||||| || || ||||| | ||  || ||| |||||||||  |||| |||||||||||| |||    |||  ||||||||    
T  48657 aaatgatatttgtacaatcatttttgtacaatttttgtacaaccttctctctcatactcacattatcttcttattctctctctttctttttctctctcta 48756  T
Q  153 ttgtttctaaccaataacaagagagtataacaa-gttgtctcaaaagttgta--aaaagtaattgttcaaatatcattactc 231  Q
    |||||| | |||||||| ||||||  | ||||| |||||| ||||| |||||  ||||| ||||||||||||||||||||||    
T  48757 ttgtttttgaccaataagaagagaacacaacaaggttgtcccaaaaattgtatcaaaag-aattgttcaaatatcattactc 48837  T

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Target: scaffold0115 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 15164 - 15078
Alignment:
Q  145 tctctctattgtttctaaccaataacaagagagtataacaagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactc 231  Q
    |||||| ||||||| |||||||| | || |||| | || |||||||| |||||||||||  || || |||||||||||||| |||||    
T  15164 tctctccattgtttttaaccaatgaaaaaagagaaaaagaagttgtcacaaaagttgtaccaaatagttgttcaaatatcactactc 15078  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 18099 - 18185
Alignment:
Q  145 tctctctattgtttctaaccaataacaagagagtataacaagttgtctcaaaagttgtaaaaagtaattgttcaaatatcattactc 231  Q
    |||||| ||||||| |||||||| | ||||||| | || ||||||||  ||||||||||  || || |||||||||||||| |||||    
T  18099 tctctccattgtttttaaccaatgaaaagagagaaaaaaaagttgtcataaaagttgtatcaaatagttgttcaaatatcactactc 18185  T

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