View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4741-Insertion-6 (Length: 534)
Name: NF4741-Insertion-6
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4741-Insertion-6 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 495; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 8 - 534
Target Start/End: Complemental strand, 44720326 - 44719800
Alignment:
| Q |
8 |
gatattagtttgaaacaaagaagataaaagtaaatactgttagctacttgaacatatctgtttcatccattcttttatttttatgacagttaattacaac |
107 |
Q |
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| T |
44720326 |
gatattagtttgaaacaaagaagataaaagtaaatactgttagctacttgaacatatctgtttcatccattcttttatttttatgacagttaattacaac |
44720227 |
T |
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| Q |
108 |
atgggaaagcatctcactatgtgaacgcttaaccatgtcagccttctgcaggtaacattgctgcttttaatgctttaaatgaaaattcagatatcaactt |
207 |
Q |
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| T |
44720226 |
atgggaaagcatctgactatgtgaacgtttaaccatgtcagccttctgtaggtaacattgctgcttttaatgctttaaatgaaaattcagatatcaactt |
44720127 |
T |
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| Q |
208 |
tataatgtatgttcatacgaaaaaatacaaataacttcagattaaaccaaacatctggttggtctgagtgctaagaggcttggccatcttaaacaaatag |
307 |
Q |
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| T |
44720126 |
tataatgtatgttcatacgaaaaaatacaaataacttcagattaaaccaaacatctggttggtctgagttctaagaggcttggccatcttaaacaaatag |
44720027 |
T |
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| Q |
308 |
ctaattgaatatggaccgctgaataatgaaactcttcaccagatcttctatttgttattttcttttgcaacattagttgattataattaagtaatcacgt |
407 |
Q |
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| T |
44720026 |
ctgattgaatatggaccgctgaataatgaaactcttcaccagatcttctatttgttattttcttttgcaacattagttgattataattaagtaatcacct |
44719927 |
T |
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| Q |
408 |
ttcttctaatgcagactacctacgaagttttgggctgaaaatggactgttgtcaaatgccaagttaatctaaataaaattgattttggcactacaacttt |
507 |
Q |
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| T |
44719926 |
ttcttctaatgcagactacctacgaagttttgggctgaaaatggaccgttgtcaaatgccaagttaatctaaataaaattgattttggcactacaacttt |
44719827 |
T |
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| Q |
508 |
gcattacattgtcctaatatgctccga |
534 |
Q |
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| T |
44719826 |
gcattacattgtcttaatatgctccga |
44719800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 43169655 - 43169874
Alignment:
| Q |
8 |
gatattagtttgaaacaaagaagataaaagtaaatactgttagctacttgaacatatctgtttcatccattcttttatttttatgacagtta-------- |
99 |
Q |
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| T |
43169655 |
gatattagtttgaaa--aagaagataaaagtaaattttg--agatactcgcacgtatctgtttcattcattcttttatttttatgacagttataatatgg |
43169750 |
T |
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| Q |
100 |
-----attacaacatgggaaagcatctcactatgtgaacgcttaaccatgtcagccttctgcaggtaa--------cattgctgcttttaatgctttaaa |
186 |
Q |
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| T |
43169751 |
gtgtgatttcaaccaggcaaagcatcacactatgtgaacgcttaaccgtgtcagccttctgcaggtaaaattaacgcattgctgtttttaatgctttaaa |
43169850 |
T |
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| Q |
187 |
tgaaaattcagatatcaactttat |
210 |
Q |
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| T |
43169851 |
tgaaaatttagttatcaactttat |
43169874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 462
Target Start/End: Original strand, 43170511 - 43170607
Alignment:
| Q |
365 |
ttttcttttgcaacattagttgattataattaagtaatcacgtttcttctaatgcagactacctacgaagttttgggctgaaaatggactgttgtcaa |
462 |
Q |
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| T |
43170511 |
ttttcttttgcggcgttagttgattataattaagtaattacctttcttctaatg-tgacggccaactaagttttgggctagaaatggactgttgtcaa |
43170607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 307
Target Start/End: Original strand, 43169890 - 43169990
Alignment:
| Q |
211 |
aatgtatgttcatacgaaaaaataca-aataacttcagattaaaccaaacatctggttggt----ctgagtgctaagaggcttggccatcttaaacaaat |
305 |
Q |
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| T |
43169890 |
aatgtattttcatatgaaaaaataaggaataacttcagattttaccaa-catgtggttggtatgtctgagtgctgagaggcttggtcatcttaaacaaat |
43169988 |
T |
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| Q |
306 |
ag |
307 |
Q |
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|| |
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| T |
43169989 |
ag |
43169990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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