View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4741-Insertion-8 (Length: 499)

Name: NF4741-Insertion-8
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4741-Insertion-8
NF4741-Insertion-8
[»] chr3 (4 HSPs)
chr3 (180-340)||(8377454-8377614)
chr3 (8-151)||(8377288-8377431)
chr3 (434-495)||(8377711-8377772)
chr3 (405-464)||(5187423-5187482)
[»] chr8 (8 HSPs)
chr8 (180-340)||(7094187-7094347)
chr8 (180-340)||(7097920-7098080)
chr8 (8-151)||(7094370-7094513)
chr8 (8-151)||(7098103-7098246)
chr8 (405-495)||(7094029-7094119)
chr8 (405-495)||(7097762-7097852)
chr8 (405-487)||(29822773-29822855)
chr8 (421-474)||(454010-454063)
[»] chr1 (8 HSPs)
chr1 (8-151)||(33885900-33886044)
chr1 (8-151)||(33958208-33958352)
chr1 (8-127)||(22362515-22362634)
chr1 (180-263)||(33886073-33886156)
chr1 (180-263)||(33958096-33958179)
chr1 (412-495)||(41313845-41313928)
chr1 (20-140)||(14097472-14097596)
chr1 (23-98)||(41314527-41314602)
[»] chr4 (3 HSPs)
chr4 (8-151)||(11993056-11993198)
chr4 (405-474)||(11992047-11992115)
chr4 (294-340)||(637749-637797)
[»] chr7 (7 HSPs)
chr7 (405-495)||(2188000-2188090)
chr7 (405-495)||(19632814-19632904)
chr7 (405-464)||(1608754-1608813)
chr7 (23-98)||(2186878-2186953)
chr7 (10-77)||(21270164-21270229)
chr7 (8-78)||(48189040-48189108)
chr7 (23-98)||(19633188-19633263)
[»] chr5 (6 HSPs)
chr5 (405-489)||(37627307-37627391)
chr5 (405-495)||(37806408-37806498)
chr5 (23-98)||(37627662-37627737)
chr5 (23-98)||(37806785-37806860)
chr5 (429-474)||(33614583-33614628)
chr5 (80-151)||(14276874-14276942)
[»] chr2 (1 HSPs)
chr2 (428-474)||(19215668-19215714)
[»] scaffold0070 (1 HSPs)
scaffold0070 (428-487)||(58857-58917)
[»] scaffold0627 (1 HSPs)
scaffold0627 (10-64)||(2963-3017)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 180 - 340
Target Start/End: Original strand, 8377454 - 8377614
Alignment:
Q  180 ggatagaaacatagtgagtcttgcaggagaaagaaatgagaacaaagatcaactctaaaactagcatttagacctatcacaagtgtagattcgatagagt 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8377454 ggatagaaacatagtgagtcttgcaggagaaagaaatgagaacaaagatcaactctaaaactagcatttagacctatcacaagtgtagattcgatagagt 8377553  T
Q  280 aaagactgttggtggaaatcttaagagctgctgttgttaaggtaagggaaagggcgctcca 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8377554 aaagactgttggtggaaatcttaagagctgctgttgttaaggtaagggaaagggcgctcca 8377614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 8377288 - 8377431
Alignment:
Q  8 aatttcacttcacactccttaagcatagtgccactcttttaggaagggagttagtgggagggttatttcacaattaataacaatcggttacgttctttat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8377288 aatttcacttcacactccttaagcatagtgccactcttttaggaagggagttagtgggagggttatttcacaattaataacaatcggttaccttctttat 8377387  T
Q  108 ctcattcattcaccactttattgattctacactctgaagaaaat 151  Q
      |||||||||||||||||| |||||||||||||||||||||||    
T  8377388 tccattcattcaccactttactgattctacactctgaagaaaat 8377431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 434 - 495
Target Start/End: Original strand, 8377711 - 8377772
Alignment:
Q  434 ttgattttgtattgcttggttgtgagtataaattgttgtttcatgcatggattgagatcttg 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  8377711 ttgattttgtattgcttggttgtgagtataaattgttgtttcatgcctggattgaggtcttg 8377772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 464
Target Start/End: Complemental strand, 5187482 - 5187423
Alignment:
Q  405 attgtatcatgcttatatactaggtgaacttgattttgtattgcttggttgtgagtataa 464  Q
    |||||| ||||||||  ||||| ||||||||| ||||| |||||||||||||||||||||    
T  5187482 attgtaacatgcttacttactacgtgaacttgcttttggattgcttggttgtgagtataa 5187423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 7e-81; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 180 - 340
Target Start/End: Complemental strand, 7094347 - 7094187
Alignment:
Q  180 ggatagaaacatagtgagtcttgcaggagaaagaaatgagaacaaagatcaactctaaaactagcatttagacctatcacaagtgtagattcgatagagt 279  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7094347 ggatagaaacatagagagtcttgcaggagaaagaaatgagaacaaagatcaactctaaaactagcatttagacctatcacaagtgtagattcgatagagt 7094248  T
Q  280 aaagactgttggtggaaatcttaagagctgctgttgttaaggtaagggaaagggcgctcca 340  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7094247 aaagactgttggtggaaatcttaagagctgctattgttaaggtaagggaaagggcgctcca 7094187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 180 - 340
Target Start/End: Complemental strand, 7098080 - 7097920
Alignment:
Q  180 ggatagaaacatagtgagtcttgcaggagaaagaaatgagaacaaagatcaactctaaaactagcatttagacctatcacaagtgtagattcgatagagt 279  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098080 ggatagaaacatagagagtcttgcaggagaaagaaatgagaacaaagatcaactctaaaactagcatttagacctatcacaagtgtagattcgatagagt 7097981  T
Q  280 aaagactgttggtggaaatcttaagagctgctgttgttaaggtaagggaaagggcgctcca 340  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7097980 aaagactgttggtggaaatcttaagagctgctattgttaaggtaagggaaagggcgctcca 7097920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 7094513 - 7094370
Alignment:
Q  8 aatttcacttcacactccttaagcatagtgccactcttttaggaagggagttagtgggagggttatttcacaattaataacaatcggttacgttctttat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7094513 aatttcacttcacactccttaagcatagtgccactcttttaggaagggagttagtgggagggttatttcacaattaataacaatcggttaccttctttat 7094414  T
Q  108 ctcattcattcaccactttattgattctacactctgaagaaaat 151  Q
      |||||||||||||||||| |||||||||||||||||||||||    
T  7094413 tccattcattcaccactttactgattctacactctgaagaaaat 7094370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 7098246 - 7098103
Alignment:
Q  8 aatttcacttcacactccttaagcatagtgccactcttttaggaagggagttagtgggagggttatttcacaattaataacaatcggttacgttctttat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7098246 aatttcacttcacactccttaagcatagtgccactcttttaggaagggagttagtgggagggttatttcacaattaataacaatcggttaccttctttat 7098147  T
Q  108 ctcattcattcaccactttattgattctacactctgaagaaaat 151  Q
      |||||||||||||||||| |||||||||||||||||||||||    
T  7098146 tccattcattcaccactttactgattctacactctgaagaaaat 7098103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 405 - 495
Target Start/End: Complemental strand, 7094119 - 7094029
Alignment:
Q  405 attgtatcatgcttatatactaggtgaacttgattttgtattgcttggttgtgagtataaattgttgtttcatgcatggattgagatcttg 495  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  7094119 attgtatcatgcttacatactaggtgaacttgattttgtattgcttggttgtgagtataaattgttgtttcatgcctggattgaggtcttg 7094029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 405 - 495
Target Start/End: Complemental strand, 7097852 - 7097762
Alignment:
Q  405 attgtatcatgcttatatactaggtgaacttgattttgtattgcttggttgtgagtataaattgttgtttcatgcatggattgagatcttg 495  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  7097852 attgtatcatgcttacatactaggtgaacttgattttgtattgcttggttgtgagtataaattgttgtttcatgcctggattgaggtcttg 7097762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 405 - 487
Target Start/End: Original strand, 29822773 - 29822855
Alignment:
Q  405 attgtatcatgcttatatactaggtgaacttgattttgtattgcttggttgtgagtataaattgttgtttcatgcatggattg 487  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||    
T  29822773 attgtatcatgcttacatactatgtgaacttgattttgtattgcttggttgtgagtatgacttgttgtttcatgcttggattg 29822855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 474
Target Start/End: Complemental strand, 454063 - 454010
Alignment:
Q  421 atactaggtgaacttgattttgtattgcttggttgtgagtataaattgttgttt 474  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||| |||||||||    
T  454063 atactatgtgaacttgcttttgtattgcttggttgtgaatataacttgttgttt 454010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 33885900 - 33886044
Alignment:
Q  8 aatttcacttcacactccttaagcatagtgccactctttt-aggaagggagttagtgggagggttatttcacaattaataacaatcggttacgttcttta 106  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||    
T  33885900 aatttcacttcacactccttaagcatagtgccactctttttaggaagggagttagtgggagggttatttcacgattaataaaaatcggttaccttcttta 33885999  T
Q  107 tctcattcattcaccactttattgattctacactctgaagaaaat 151  Q
    |  |||||||||||||||||| |||||||||||||||||||||||    
T  33886000 ttccattcattcaccactttactgattctacactctgaagaaaat 33886044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 33958352 - 33958208
Alignment:
Q  8 aatttcacttcacactccttaagcatagtgccactctttt-aggaagggagttagtgggagggttatttcacaattaataacaatcggttacgttcttta 106  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||    
T  33958352 aatttcacttcacactccttaagcatagtgccactctttttaggaagggagttagtgggagggttatttcacgattaataaaaatcggttaccttcttta 33958253  T
Q  107 tctcattcattcaccactttattgattctacactctgaagaaaat 151  Q
    |  |||||||||||||||||| |||||||||||||||||||||||    
T  33958252 ttccattcattcaccactttactgattctacactctgaagaaaat 33958208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 22362515 - 22362634
Alignment:
Q  8 aatttcacttcacactccttaagcatagtgccactcttttaggaagggagttagtgggagggttatttcacaattaataacaatcggttacgttctttat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22362515 aatttcacttcacactccttaagcatagtgccactcttttaggaagggagttagtgggagggttatttcacaattaataacaatcggttaccttctttat 22362614  T
Q  108 ctcattcattcaccacttta 127  Q
      ||||||||||||||||||    
T  22362615 tccattcattcaccacttta 22362634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 180 - 263
Target Start/End: Original strand, 33886073 - 33886156
Alignment:
Q  180 ggatagaaacatagtgagtcttgcaggagaaagaaatgagaacaaagatcaactctaaaactagcatttagacctatcacaagt 263  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33886073 ggatagaaacatagagagtcttgcaggagaaagaaatgagaacaaagatcaactctaaaactagcatttagatctatcacaagt 33886156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 33958179 - 33958096
Alignment:
Q  180 ggatagaaacatagtgagtcttgcaggagaaagaaatgagaacaaagatcaactctaaaactagcatttagacctatcacaagt 263  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33958179 ggatagaaacatagagagtcttgcaggagaaagaaatgagaacaaagatcaactctaaaactagcatttagatctatcacaagt 33958096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 412 - 495
Target Start/End: Complemental strand, 41313928 - 41313845
Alignment:
Q  412 catgcttatatactaggtgaacttgattttgtattgcttggttgtgagtataaattgttgtttcatgcatggattgagatcttg 495  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||    
T  41313928 catgcttacatactatgtgaacttgattttgtattgcttggttgtgagtataacttgttgtttcatgcctggattgaggtcttg 41313845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 14097472 - 14097596
Alignment:
Q  20 cactccttaagcatagtgccactcttttaggaagggagttagtgggagggttatttcacaattaataacaatcggttacgttctttat----ctcattca 115  Q
    ||||||||| | |||| ||||||| | || |||||||||||| || ||| |||| |||| ||||||||||||||||||| |  |||||     |||||||    
T  14097472 cactccttaggtatagagccactcatctaagaagggagttagaggaaggtttatctcactattaataacaatcggttacctcatttattctattcattca 14097571  T
Q  116 ttcaccactttattgattctacact 140  Q
    ||||||||| || ||||||||||||    
T  14097572 ttcaccactctactgattctacact 14097596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 41314602 - 41314527
Alignment:
Q  23 tccttaagcatagtgccactcttttaggaagggagttagtgggagggttatttcacaattaataacaatcggttac 98  Q
    |||| ||| |||||||||||| | ||||||| ||||||||||||| |||||||||| | ||||||||||| |||||    
T  41314602 tcctcaagtatagtgccactcatctaggaagagagttagtgggagagttatttcactaataataacaatcagttac 41314527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 11993198 - 11993056
Alignment:
Q  8 aatttcacttcacactccttaagcatagtgccactcttttaggaagggagttagtgggagggttatttcacaattaataacaatcggttacgttctttat 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||| ||||| | |||| |    
T  11993198 aatttcacttcacactccttaagcctagtgccactcttttaggaagggagttagtggga-ggttatttcattattaataacaatcagttacctcctttgt 11993100  T
Q  108 ctcattcattcaccactttattgattctacactctgaagaaaat 151  Q
      | |||||||||||||||| || ||||||||| | ||||||||    
T  11993099 tcctttcattcaccactttactggttctacactttaaagaaaat 11993056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 474
Target Start/End: Complemental strand, 11992115 - 11992047
Alignment:
Q  405 attgtatcatgcttatatactaggtgaacttgattttgtattgcttggttgtgagtataaattgttgttt 474  Q
    |||||| ||||| || |||||| | ||||||||||||||||||||||| ||||||||||| | |||||||    
T  11992115 attgtaccatgcatacatactatg-gaacttgattttgtattgcttggctgtgagtataattcgttgttt 11992047  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 637749 - 637797
Alignment:
Q  294 gaaatcttaagagctgctg--ttgttaaggtaagggaaagggcgctcca 340  Q
    |||||||||| ||||||||  ||||||||||||||||||| ||||||||    
T  637749 gaaatcttaacagctgctgctttgttaaggtaagggaaagtgcgctcca 637797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 405 - 495
Target Start/End: Original strand, 2188000 - 2188090
Alignment:
Q  405 attgtatcatgcttatatactaggtgaacttgattttgtattgcttggttgtgagtataaattgttgtttcatgcatggattgagatcttg 495  Q
    ||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| |||||    
T  2188000 attgtatcatgcttacatactatgtgaacttgattttgtattgattggttgtgagtataacttgttgtttcatgcttggattgaggtcttg 2188090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 405 - 495
Target Start/End: Complemental strand, 19632904 - 19632814
Alignment:
Q  405 attgtatcatgcttatatactaggtgaacttgattttgtattgcttggttgtgagtataaattgttgtttcatgcatggattgagatcttg 495  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||    
T  19632904 attgtatcatgcttacatactatgtgaacttgattttgtattgcttcgttgtgagtataacttgttgtttcatgcttggattgaggtcttg 19632814  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 405 - 464
Target Start/End: Complemental strand, 1608813 - 1608754
Alignment:
Q  405 attgtatcatgcttatatactaggtgaacttgattttgtattgcttggttgtgagtataa 464  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||    
T  1608813 attgtatcatgcttacatactatgtgaatttgattttgtattgcttggttgtgagtataa 1608754  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 2186878 - 2186953
Alignment:
Q  23 tccttaagcatagtgccactcttttaggaagggagttagtgggagggttatttcacaattaataacaatcggttac 98  Q
    |||| ||| |||||||||||| | ||||||| ||||||||||||| |||||||||| | ||||||||||| |||||    
T  2186878 tcctcaagtatagtgccactcatctaggaagagagttagtgggagagttatttcactaataataacaatcagttac 2186953  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 21270229 - 21270164
Alignment:
Q  10 tttcacttcacactccttaagcatagtgccactcttttaggaagggagttagtgggagggttatttca 77  Q
    ||||||||  |||| ||||||||||||||||||| ||||||||||| |||||||||| ||||||||||    
T  21270229 tttcactttccacttcttaagcatagtgccactcatttaggaaggg-gttagtggga-ggttatttca 21270164  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 48189108 - 48189040
Alignment:
Q  8 aatttcacttcacactccttaagcatagtgccactcttttaggaagggagttagtgggagggttatttcac 78  Q
    ||||||||||  |||| ||||||||||||||||| | ||||||||||| |||||||||| |||||||||||    
T  48189108 aatttcactttccacttcttaagcatagtgccacccatttaggaaggg-gttagtggga-ggttatttcac 48189040  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 19633263 - 19633188
Alignment:
Q  23 tccttaagcatagtgccactcttttaggaagggagttagtgggagggttatttcacaattaataacaatcggttac 98  Q
    |||| ||| |||||||||||| | ||||||| ||||||||||||| ||||||| || | ||| ||||||| |||||    
T  19633263 tcctcaagtatagtgccactcatctaggaagagagttagtgggagagttatttaactaataacaacaatcagttac 19633188  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 405 - 489
Target Start/End: Complemental strand, 37627391 - 37627307
Alignment:
Q  405 attgtatcatgcttatatactaggtgaacttgattttgtattgcttggttgtgagtataaattgttgtttcatgcatggattgag 489  Q
    ||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||    
T  37627391 attgtatcatgcttacatactatgtgaacttgattttatattgcttggttgtgagtataaattgttgtttcatgccttgattgag 37627307  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 405 - 495
Target Start/End: Complemental strand, 37806498 - 37806408
Alignment:
Q  405 attgtatcatgcttatatactaggtgaacttgattttgtattgcttggttgtgagtataaattgttgtttcatgcatggattgagatcttg 495  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| ||||| |||||||| ||||||||| |||||    
T  37806498 attgtatcatgcttacatactatgtgaacttgattttgtattgctttgttgtgagtataacttgttatttcatgcctggattgaggtcttg 37806408  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 37627737 - 37627662
Alignment:
Q  23 tccttaagcatagtgccactcttttaggaagggagttagtgggagggttatttcacaattaataacaatcggttac 98  Q
    |||| ||| |||||||||||| | ||||||| ||||||||||||| |||||||||| | ||||||||||| |||||    
T  37627737 tcctcaagtatagtgccactcatctaggaagagagttagtgggagagttatttcactaataataacaatcagttac 37627662  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 37806860 - 37806785
Alignment:
Q  23 tccttaagcatagtgccactcttttaggaagggagttagtgggagggttatttcacaattaataacaatcggttac 98  Q
    |||| ||| |||||||||||| | ||||||| ||||||||||||| |||||||||| | ||||||||||| |||||    
T  37806860 tcctcaagtatagtgccactcatctaggaagagagttagtgggagagttatttcactaataataacaatcagttac 37806785  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 429 - 474
Target Start/End: Complemental strand, 33614628 - 33614583
Alignment:
Q  429 tgaacttgattttgtattgcttggttgtgagtataaattgttgttt 474  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||    
T  33614628 tgaacttgattttgtattgtttggttgtgagtataatttgttgttt 33614583  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 14276942 - 14276874
Alignment:
Q  80 attaataacaatcggttacgttctttatctcattcattcaccactttattgattctacactctgaagaaaat 151  Q
    ||||||| ||||||||||| | ||||||  |||||||||||||||||| |||   |||||| ||||||||||    
T  14276942 attaatagcaatcggttacctcctttattccattcattcaccactttactga---tacactttgaagaaaat 14276874  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 428 - 474
Target Start/End: Original strand, 19215668 - 19215714
Alignment:
Q  428 gtgaacttgattttgtattgcttggttgtgagtataaattgttgttt 474  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  19215668 gtgaacttgattttgtattgcttggttgtgagtataacttgttgttt 19215714  T

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Target: scaffold0070 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 428 - 487
Target Start/End: Complemental strand, 58917 - 58857
Alignment:
Q  428 gtgaacttgattttgtattgcttggttgtgagtataaattgttg-tttcatgcatggattg 487  Q
    ||||||||| ||||||||||||||||||||| ||||| |||||| ||||||||||| ||||    
T  58917 gtgaacttgcttttgtattgcttggttgtgaatataacttgttgttttcatgcatgaattg 58857  T

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Target: scaffold0627 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 3017 - 2963
Alignment:
Q  10 tttcacttcacactccttaagcatagtgccactcttttaggaagggagttagtgg 64  Q
    ||||||||| |||  | ||||||||||| ||||||||||||||||||||||||||    
T  3017 tttcacttcccacctcataagcatagtgtcactcttttaggaagggagttagtgg 2963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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