View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4741-Insertion-9 (Length: 344)
Name: NF4741-Insertion-9
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4741-Insertion-9 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 9 - 344
Target Start/End: Complemental strand, 46788463 - 46788126
Alignment:
| Q |
9 |
aaaggggctttttccagggggtataaaaatcaaatcgttccatcatgaactcgttggagaaaaagagagaatcatcaggatccaaattatttcatagact |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46788463 |
aaagtggctttttccagggggtataaaaatcaaatcgttccatcatgaactcgttggagaaaaagagagaatcatcaggatccaaattatttcatagact |
46788364 |
T |
|
| Q |
109 |
agtattagtataaccaatacgcaaactttactattactacctccat-tttttttccagtaca-nnnnnnnnnnnnnnaaatatcaactaagaatttggaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46788363 |
agtattagtataaccaatacgcaaactttactattactacctccatgtttttttccagtacattttttttttttttaaaatatcaactaagaatttggaa |
46788264 |
T |
|
| Q |
207 |
tttctttctaattctatgtaatgtgaatctcaaattgatcattttgattatttcaaattatgcagattggttcttatatgttttaaaatttacacattgg |
306 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46788263 |
tttctttctaattctatgtaagttgaatctcaaattgatcattttgattatttcaaattatgcagattggttcttatatgttttaaaatttacacattga |
46788164 |
T |
|
| Q |
307 |
ctcatattttttattaaaactttacaatttattcccta |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46788163 |
ctcatattttttattaaaactttacaatttattcccta |
46788126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 46780933 - 46780894
Alignment:
| Q |
121 |
accaatacgcaaactttactattactacctccattttttt |
160 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46780933 |
accaataagcaaactttactattactacctccattttttt |
46780894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 6865896 - 6865843
Alignment:
| Q |
253 |
attatttcaaattatgcagattggttcttatatgttttaaaatttacacattgg |
306 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| ||||| |||||||||| |
|
|
| T |
6865896 |
attatttcaaattatgcaaattgattcttatatgttctaaaaaatacacattgg |
6865843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 36028927 - 36028866
Alignment:
| Q |
258 |
ttcaaattatgcagattggttcttatatgttttaaa-atttacacattggctcatatttttt |
318 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||| | ||||||||| || | |||||||| |
|
|
| T |
36028927 |
ttcaaattatgcaaattggttcttatatgtttcaaacaattacacattagcccctatttttt |
36028866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University