View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4741_high_1 (Length: 701)

Name: NF4741_high_1
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4741_high_1
NF4741_high_1
[»] chr1 (8 HSPs)
chr1 (10-701)||(29449014-29449676)
chr1 (480-672)||(29462304-29462490)
chr1 (131-200)||(29457080-29457149)
chr1 (409-477)||(29462215-29462283)
chr1 (378-452)||(29444247-29444321)
chr1 (378-452)||(29454254-29454328)
chr1 (58-105)||(29456984-29457031)
chr1 (201-253)||(29461783-29461834)
[»] chr2 (6 HSPs)
chr2 (378-672)||(9363451-9363762)
chr2 (378-452)||(12019793-12019867)
chr2 (378-452)||(11988326-11988400)
chr2 (382-452)||(12007150-12007220)
chr2 (477-525)||(9069069-9069117)
chr2 (374-474)||(9287782-9287882)
[»] chr8 (1 HSPs)
chr8 (378-474)||(41968300-41968397)
[»] chr7 (1 HSPs)
chr7 (377-441)||(45242651-45242715)


Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 10 - 701
Target Start/End: Original strand, 29449014 - 29449676
Alignment:
Q  10 agaagcaaaggtactacacaaaatctaatacaagaaactacacttcacaaatatgtacttgcaaaagaaacctacaaggcattttcacacaaaaacgccc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449014 agaagcaaaggtactacacaaaatctaatacaagaaactacacttcacaaatatgtacttgcaaaagaaacctacaaggcattttcacacaaaaacgccc 29449113  T
Q  110 nnnnnnnnaatcatgtcttgaatattttttctacaaattaagttttatgttgtaatatcataaggtggactcttaatccttttctgctgtagactttgaa 209  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29449114 ttttttt-aatcatgtcttgaatattttttctacaaattaagttttatgttgtaatatcataaggtggactcttaatccttttatgctgtagactttgaa 29449212  T
Q  210 tgccatccctttgtgcccaaggttgttttatagatccaacagaaataggtacatgacgtggcaggttattattgataagagcaatgatacatggacattc 309  Q
    ||||||||||||||||||||                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449213 tgccatccctttgtgcccaa-------------------cagaaataggtacatgacgtggcaggttattattgataagagcaatgatacatggacattc 29449293  T
Q  310 ggcacatgcacgtgactagctaatttgttgagtttacttatatgatattcatgtgnnnnnnnnnacaaggatgacttcttgtaccaaggatttaaatcga 409  Q
    ||| ||||    |||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||    
T  29449294 ggcccatg----tgactagctaatttgttgagtttacttatatgatattcatgtgtttttttt-acaaggatgacttcttgtaccaaggatttaaatcga 29449388  T
Q  410 cattgtaagggagtgaaagaagaaccactgatgtgaagctgaaaacgaatgctcaaattgtttctagtggtttgtgggaaggattgaattgataaggaat 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449389 cattgtaagggagtgaaagaagaaccactgatgtgaagctgaaaacgaatgctcaaattgtttctagtggtttgtgggaaggattgaattgataaggaat 29449488  T
Q  510 gtagctccacccatttgtatctcacttctggaatggtgtgacatatatcacacttctctcttgtgtaaaaatctcacacgaggggatccattccccatgg 609  Q
    ||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  29449489 gtagctccacccatttgtatctcacttctggaatggtgtgac----atcacacttctctcttgtgtaaaaatctcacacgaggggatccattccccgtgg 29449584  T
Q  610 aattgtgaatggggatgacctttggtgaaagaaaaggccaacagaagtgtgacaaagatctcatctgtgttgttgcatgctttcattggatc 701  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449585 aattgtgaatggggatgacctttggtgaaagaaaaggccaatagaagtgtgacaaagatctcatctgtgttgttgcatgctttcattggatc 29449676  T

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Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 480 - 672
Target Start/End: Original strand, 29462304 - 29462490
Alignment:
Q  480 tttgtgggaaggattgaattgataaggaatgtagctccacccatttgtatctcacttctggaatggtgtgacatatatcacacttctctcttgtgtaaaa 579  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||| ||||||    || |||||||||| ||||||||    
T  29462304 tttgtgggaaggattgaattgataaggaatgtagctccacacatttgtatctctcttctgaaatggtatgacat----ca-acttctctctcgtgtaaaa 29462398  T
Q  580 atctcacacgaggggatccattccccatggaattgtgaatggggatgacctttggtgaaagaaaaggccaacagaagtgtgacaaagatctca 672  Q
    |||||||| |||||||||| || ||  ||||||| |||||||||||||||| ||||||||| ||||||| ||| |||||||||||||||||||    
T  29462399 atctcacatgaggggatccgtttccggtggaattatgaatggggatgacctatggtgaaag-aaaggcctacaaaagtgtgacaaagatctca 29462490  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 29457080 - 29457149
Alignment:
Q  131 atattttttctacaaattaagttttatgttgtaatatcataaggtggactcttaatccttttctgctgta 200  Q
    |||||||||||||||  || |||||||||||||||||||||| ||||||| ||| |||||||||||||||    
T  29457080 atattttttctacaaggtatgttttatgttgtaatatcataatgtggactattattccttttctgctgta 29457149  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 409 - 477
Target Start/End: Original strand, 29462215 - 29462283
Alignment:
Q  409 acattgtaagggagtgaaagaagaaccactgatgtgaagctgaaaacgaatgctcaaattgtttctagt 477  Q
    ||||||||||||| |||||||||||||| ||||||| ||| |||| | ||||||||| |||||||||||    
T  29462215 acattgtaagggaatgaaagaagaaccaatgatgtgtagcagaaaccaaatgctcaagttgtttctagt 29462283  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 378 - 452
Target Start/End: Original strand, 29444247 - 29444321
Alignment:
Q  378 ggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaa 452  Q
    |||| ||||||||| |||||||||||||  || |||||||||||||||| ||||||||  ||||| | |||||||    
T  29444247 ggataacttcttgtcccaaggatttaaactgaaattgtaagggagtgaaggaagaacctttgatgcgtagctgaa 29444321  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 378 - 452
Target Start/End: Original strand, 29454254 - 29454328
Alignment:
Q  378 ggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaa 452  Q
    |||||||||||||| || ||||||||||| || ||||||| |||||||| |||||| |  ||||||| |||||||    
T  29454254 ggatgacttcttgtcccgaggatttaaattgaaattgtaatggagtgaaggaagaatctttgatgtgtagctgaa 29454328  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 29456984 - 29457031
Alignment:
Q  58 aaatatgtacttgcaaaagaaacctacaaggcattttcacacaaaaac 105  Q
    |||| |||||| ||||||||||||||||| | ||||||||||||||||    
T  29456984 aaatttgtactcgcaaaagaaacctacaaagtattttcacacaaaaac 29457031  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 29461783 - 29461834
Alignment:
Q  201 gactttgaatgccatccctttgtgcccaaggttgttttatagatccaacagaa 253  Q
    |||||||| |||||| |||| ||||| ||||||||||||||||||||| ||||    
T  29461783 gactttgactgccattcctt-gtgcctaaggttgttttatagatccaatagaa 29461834  T

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Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 378 - 672
Target Start/End: Complemental strand, 9363762 - 9363451
Alignment:
Q  378 ggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaaaacgaatgctcaaattgtttctag- 476  Q
    |||||||||||||| |||||||||||||| | |||||||||||||||| ||||||||||  |||||| |||||||  || || ||||| |||||||||      
T  9363762 ggatgacttcttgtcccaaggatttaaattgtcattgtaagggagtgatagaagaaccagggatgtgtagctgaagccggatactcaagttgtttctaag 9363663  T
Q  477 ------------------tggtttgtgggaaggattgaattgataaggaatgtagctccacccatttgtatctcacttctggaatggtgtgacatatatc 558  Q
                      ||||| | ||||||  |||||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||||     |    
T  9363662 cgacggaatgagtcaccttggttagcgggaagagttgaattgataaggaatgtagctccatccatttgtatctctcttcttgagtggtgtgacac----c 9363567  T
Q  559 acacttctctcttgtgtaaaaatctcacacgaggggatccattccc-----catggaattgtgaatggggatgacctttggtgaaagaaaaggccaacag 653  Q
    ||||||||||| |||  |||||||||||| ||||||||||||||||      || |||| ||||||||||||||||| ||||| ||| ||||||| || |    
T  9363566 acacttctctcatgt--aaaaatctcacatgaggggatccattcccggtggaatcgaatcgtgaatggggatgacctatggtggaag-aaaggcctactg 9363470  T
Q  654 aagtgtgacaaagatctca 672  Q
    |||||  ||||||||||||    
T  9363469 aagtgccacaaagatctca 9363451  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 378 - 452
Target Start/End: Original strand, 12019793 - 12019867
Alignment:
Q  378 ggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaa 452  Q
    |||||||||||||| | |||||||||||| ||||||||||||||||||| |||||| |  ||||||| |||||||    
T  12019793 ggatgacttcttgtccaaaggatttaaattgacattgtaagggagtgaaggaagaatcgttgatgtgtagctgaa 12019867  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 378 - 452
Target Start/End: Original strand, 11988326 - 11988400
Alignment:
Q  378 ggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaa 452  Q
    ||||||||||||||   |||||||||||| ||||||||||||||||||| ||||||||  || |||| |||||||    
T  11988326 ggatgacttcttgtcaaaaggatttaaattgacattgtaagggagtgaaggaagaacctttgttgtgtagctgaa 11988400  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 452
Target Start/End: Original strand, 12007150 - 12007220
Alignment:
Q  382 gacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaa 452  Q
    |||||| ||| || ||||||||||| ||| ||||||||||||||| ||||||||  | ||||| |||||||    
T  12007150 gacttcctgtcccgaggatttaaattgaccttgtaagggagtgaaggaagaacctgttatgtgtagctgaa 12007220  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 477 - 525
Target Start/End: Original strand, 9069069 - 9069117
Alignment:
Q  477 tggtttgtgggaaggattgaattgataaggaatgtagctccacccattt 525  Q
    ||||||||||||| | |||||||||||| ||||| |||| |||||||||    
T  9069069 tggtttgtgggaaaggttgaattgataaagaatgaagctgcacccattt 9069117  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 374 - 474
Target Start/End: Complemental strand, 9287882 - 9287782
Alignment:
Q  374 acaaggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaaaacgaatgctcaaattgtttc 473  Q
    ||||||| ||||| |||| || ||||||||||| || |||||||||||  ||  |||| |||  ||||||| ||||||||  | |||||||| |||||||    
T  9287882 acaaggacgactttttgtcccgaggatttaaattgagattgtaagggatggatggaagtacctgtgatgtgcagctgaaacaggatgctcaagttgtttc 9287783  T
Q  474 t 474  Q
    |    
T  9287782 t 9287782  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 474
Target Start/End: Original strand, 41968300 - 41968397
Alignment:
Q  378 ggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgatgtgaagctgaaaac-gaatgctcaaattgtttct 474  Q
    |||||||||||||| |||||||||||||| || |||||||||||  ||| |||| |||  ||||||| |||||||| | | |||||||| ||||||||    
T  41968300 ggatgacttcttgtcccaaggatttaaattgagattgtaagggatggaaggaaggacctgtgatgtgcagctgaaaccaggatgctcaagttgtttct 41968397  T

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Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 377 - 441
Target Start/End: Complemental strand, 45242715 - 45242651
Alignment:
Q  377 aggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgat 441  Q
    ||||||||||||||| ||| |||||||||| ||||||| ||| |||  || ||||||||| ||||    
T  45242715 aggatgacttcttgttccagggatttaaattgacattgaaagagagccaaggaagaaccagtgat 45242651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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