View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4741_high_13 (Length: 328)
Name: NF4741_high_13
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4741_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 31538786 - 31539101
Alignment:
| Q |
18 |
aaaccatagcctaaccatgatgtaaagaagacaggtcagtgtccacattcatatct--aaggatatatcaccattaaggttatcaaaatagcttatacat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31538786 |
aaaccatagcctaaccatgatgtaaagaagacaggtcagtgtccacattcaaatcatgaaggaaatatcaccattaaggttatcaaaatagcttatacat |
31538885 |
T |
|
| Q |
116 |
aagcactcatatctaaggatcgggtttgggtcacatgcatcccagtctaaccttagaatactcaggtctgaaaatc-------------------gagta |
196 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
31538886 |
aagcactcatatctaaggatcgggtttgggtcacatacatcccagtctaaccttagaatactcaggtctgaaaaccgagtaatagatccaaaacagagta |
31538985 |
T |
|
| Q |
197 |
attgcagaaaaatcaaacaacagctaagaatactacacatgttaaattgaaaaattcaaaaccataaattgagttgattaatcacaaaagagtctaaacc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31538986 |
attgcagaaaaatcaaacaacagctaagaatactacacatgttaaattgaaaaattcaaaaccataaattgagttgattaatcacaaaagagtctaaacc |
31539085 |
T |
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| Q |
297 |
atgacatcatgttcat |
312 |
Q |
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|||||||||||||||| |
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| T |
31539086 |
atgacatcatgttcat |
31539101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 33869997 - 33870061
Alignment:
| Q |
220 |
ctaagaatactacacatgttaaattgaaaaattcaaaaccataaattgagttgattaatcacaaa |
284 |
Q |
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|||| ||||||||||||||||||| | |||||||||||| | ||||||||| |||||||||||| |
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| T |
33869997 |
ctaaaaatactacacatgttaaatcgcaaaattcaaaacaagaaattgagtaaattaatcacaaa |
33870061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 46494883 - 46494940
Alignment:
| Q |
231 |
acacatgttaaattgaaaaattcaaaaccataaattgagttgattaatcacaaaagag |
288 |
Q |
| |
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|||||||||||||| ||||||||| ||| | ||||||| ||||||||||| ||||||| |
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| T |
46494883 |
acacatgttaaattaaaaaattcacaacaacaaattgaattgattaatcataaaagag |
46494940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 8024971 - 8025034
Alignment:
| Q |
229 |
ctacacatgttaaa--ttgaaaaattcaaaaccataaattgagttgattaatcacaaaagagtc |
290 |
Q |
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|||||||||||||| ||||||||||||||| ||||||| |||||||||||||||| ||||| |
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| T |
8024971 |
ctacacatgttaaaaattgaaaaattcaaaataataaattatgttgattaatcacaaaggagtc |
8025034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 8017700 - 8017755
Alignment:
| Q |
228 |
actacacatgttaaattgaaaaattcaaaaccataaattgagttgattaatcacaa |
283 |
Q |
| |
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|||||||||||||||||| |||||| ||||| | ||||| ||||| |||||||||| |
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| T |
8017700 |
actacacatgttaaattgcaaaatttaaaacaagaaatttagttgcttaatcacaa |
8017755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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