View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4741_high_22 (Length: 237)
Name: NF4741_high_22
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4741_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 46380630 - 46380847
Alignment:
| Q |
1 |
ttaaatagttcctaccttggcattggtgttctagtgatttggtt-ttcatataacaagccaannnnnnnacagcaaactagctagacaacttattatgta |
99 |
Q |
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| T |
46380630 |
ttaaatagttcctaccttggcattggtgttctagtgatttggttattcatataacaagccaatttttttacagcaa----gctagacaacttattatgta |
46380725 |
T |
|
| Q |
100 |
cttttcaaataatatttcatcgctacaatttggcaggatcgcataatagctcgtctgcagcagccgtattccctagattgcattcctgttgaagcagaat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46380726 |
cttttcaaataatatttcatcgctacaatttggcaggatcgcataatagctcgtctgcagcagccgtattccctagattgcattcctgttgaagcaggat |
46380825 |
T |
|
| Q |
200 |
atcaggttggcgaacataattt |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
46380826 |
atcaggttggcgaacataattt |
46380847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 126 - 217
Target Start/End: Original strand, 25755904 - 25755995
Alignment:
| Q |
126 |
aatttggcaggatcgcataatagctcgtctgcagcagccgtattccctagattgcattcctgttgaagcagaatatcaggttggcgaacata |
217 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25755904 |
aatttggcaggatcgcataattgctcgtctgcagcagccatattccctggattgcattcctgttgaagcagaatatcaggttggtgaacata |
25755995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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