View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4741_high_23 (Length: 236)
Name: NF4741_high_23
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4741_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 5944029 - 5944253
Alignment:
| Q |
6 |
catcatcacaactcaaaactgatggacaaattcacaaatcaaaagatagattcacaactcagcatgcaaaagccaagaagagcatgaaatgttaaaaatc |
105 |
Q |
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| T |
5944029 |
catcatcacaactcaaaactgatggacaaattcacaaatcaaaagatagattcacaactcagcatgcaaaagccaagaagagcatgaaatgttaaaaatc |
5944128 |
T |
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| Q |
106 |
aaaagaaacattgacaaaacacagattcaaaattactagagagtggaagatggttagactattttccagttggaggcaaatgatgggccaccatcaaaat |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5944129 |
aaaagaaacattgacaaaacacagattcaaaattactagagagtggaagatggttagactattttccagttggaggcaaatgatgggccaccatcaagat |
5944228 |
T |
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| Q |
206 |
tatcacatgtctatactgatgatgt |
230 |
Q |
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||| ||||||| ||||||||||||| |
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| T |
5944229 |
tattacatgtcaatactgatgatgt |
5944253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 18624778 - 18624729
Alignment:
| Q |
20 |
aaaactgatggacaaattcacaaatcaaaagatagattcacaactcagca |
69 |
Q |
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|||||||||| ||||| |||||||||| |||||| ||||||||||||||| |
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| T |
18624778 |
aaaactgatgaacaaactcacaaatcacaagataaattcacaactcagca |
18624729 |
T |
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