View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4741_high_4 (Length: 511)
Name: NF4741_high_4
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4741_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 7452334 - 7452685
Alignment:
| Q |
1 |
ctaccatataggttttaatttttaatctctaaccaccggaatattttgatctaccacccaccccaaacctatttcactagtttctttaattgttgacaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7452334 |
ctaccatataggttttaatttttaatctctaaccaccggaatattttgatctaccacccaccccaaacctatttcactagtttctttaattgttgacaag |
7452433 |
T |
|
| Q |
101 |
agcattgcatttgcataaccttnnnnnnnnttgaatacttcagttaatgaaatagagtccaacacaaatttaaattgatgtcaattacttagtaacaaca |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7452434 |
agcattgcatttgcataaccttaaaaaaaattgaatacttcagttaatgaaatagagtccaacacaaatttaaattgatgtcaattacttagtaacaaca |
7452533 |
T |
|
| Q |
201 |
attaggacacaaatatagggagtatgcatcacttgtcacatctaacatatatggttgaagtaaaatgaannnnnnnnnnnnnatgtcaattcaacatgct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7452534 |
attaggacacaaatatagggagtatgcatcacttgtcacatctaacatatatggttgaagtaaaatgaa--acacacacacaatgtcaattcaacatgct |
7452631 |
T |
|
| Q |
301 |
tgtctagttgtctacctaggaaaagcaagcaatgtaaaacactgattttgatcc |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7452632 |
tgtctagttgtctacctaggaaaagcaagcaatgtaaaacactgattttgatcc |
7452685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 7452737 - 7452823
Alignment:
| Q |
406 |
gactagttacatgatataatttagggtcgtcgacaatgagctttgcacatatggtagcagtcatagaaacaaggtccaccacagtga |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7452737 |
gactagttacatgatataatttagggtcgtcgacaatgagctttgcacatatggtagcagtcatagaaacaaggtccaccacagtga |
7452823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 488
Target Start/End: Original strand, 52826916 - 52826973
Alignment:
| Q |
431 |
gtcgtcgacaatgagctttgcacatatggtagcagtcatagaaacaaggtccaccaca |
488 |
Q |
| |
|
|||| |||||||||||||| |||||||||| || |||||| |||| ||||||||||| |
|
|
| T |
52826916 |
gtcggcgacaatgagctttacacatatggtgacaatcatagtaacatggtccaccaca |
52826973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University