View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4741_high_6 (Length: 431)
Name: NF4741_high_6
Description: NF4741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4741_high_6 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 11114 - 11525
Alignment:
| Q |
19 |
acttacttctttggattgtcatgttacctttcaacttaataagtgtttgattttgcagaattccaccaagaaaatgattggtacagctgagagacatgga |
118 |
Q |
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| T |
11114 |
acttacttctttggattgtcatgttacctttcaacttaataagtgtttgattttgcagaattccaccaagaaaatgattggtacagctgagagacatgga |
11213 |
T |
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| Q |
119 |
gatttgtatgctatacaagcccatgcctcagtttctttactttctcccatgctttcttgtaattctgtttctaataacatggattctgcctcattatggc |
218 |
Q |
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| T |
11214 |
gatttgtatgctatacaagcccatgcctcagtttctttactttctcccatgctttcttgtaattctgtttctaataacatggattctgcctctttatggc |
11313 |
T |
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| Q |
219 |
attgtagattaggtcatatctctgacgctattcacaaatgtattgcttcaacttatccttttatttcttacaagaatcataataaaaatactccttgtga |
318 |
Q |
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| T |
11314 |
attgtagattaggtcatatctctgacgctattcacaaatgtattgcttcaacttatccttttatttcttacaagaatcataataaaaatactccttgtga |
11413 |
T |
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| Q |
319 |
tgtttgtcatttttccaaacaaagagttcttccttatcctaatagtgttactcattctaataacatttttgatttgttacatgctgatatatggggccc- |
417 |
Q |
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| T |
11414 |
tgtttgtcatttttccaaacaaagagttcttccttatcctaatagtgttactcattctaataacatttttgatttgttacatgctgatatatggggccct |
11513 |
T |
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| Q |
418 |
tatgctactcct |
429 |
Q |
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| T |
11514 |
tatgctactcct |
11525 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 22454768 - 22454726
Alignment:
| Q |
224 |
agattaggtcatatctctgacgctattcacaaatgtattgctt |
266 |
Q |
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| T |
22454768 |
agattaggtcatatctctgacgctattcacaaatgtattgctt |
22454726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 41059995 - 41059929
Alignment:
| Q |
64 |
tttgattttgcagaattccaccaagaaaatgattggtacagctgagagacatggagatttgtatgct |
130 |
Q |
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| T |
41059995 |
tttgattttacataattcaaccaagaaactgattggtacggaggagagacatggatgtttgtatgct |
41059929 |
T |
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